DAC for RNAseq data in B cell malignancies

Dr Marek Mraz
101627@mail.muni.cz

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Dataset ID	Description	Technology	Samples
EGAD50000000878	The dataset contains RNA sequencing data from 18 paired samples of 9 CLL patients treated with idelalisib in vivo (median time on therapy 4 weeks; range 2-5 weeks).	NextSeq 500	18
EGAD50000000879	The dataset contains RNA sequencing data from 22 paired samples of 11 patients before and during ibrutinib therapy (median time on therapy 2 weeks; range 1-12 weeks). The sequencing was performed in two batches.	Illumina HiSeq 1000 NextSeq 500	22
EGAD50000001384	This dataset contains RNA profiling of paired FL and tFL samples (n=11 pairs) sequenced by Illumina NextSeq500 instrument. Libraries used in this mRNA-seq dataset were prepared with QuantSeq FWD library preparation kit (Lexogen, Catalog Number: 015) with the addition of UMI module. RNAs used for library preparation were isolated from FFPE tissues using ALLPREP RNA/DNA FFPE kit (QIAGEN,Catalog number: 80234). Data are uploaded as FASTQ format.	NextSeq 500	22
EGAD50000001385	This dataset contains miRNA-seq of paired FL and tFL samples (n=10 pairs) sequenced by Illumina NextSeq500. Libraries used in this miRNA-seq dataset were prepared with NEBNext Multiplex Small RNA Library Prep Set for Illumina (NEB,Catalog number: E7560S). RNAs used for library preparation were isolated from FFPE tissues using High Pure miRNA Isolation Kit (Roche,Catalog number: 05080576001). Data are uploaded as FASTQ format.	NextSeq 500	20