RNA sequencing of colon tumor/normal sample pairs

27/05/2015
139 samples
DAC: EGAC00001000055
Technology: Illumina HiSeq 2000

Access Policy1 Study Files

Metadata

Request Access

GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT

GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT WITH COMMERCIAL ORGANIZATIONThis Data Access Agreement (“Agreement”) between Genentech, Inc. (“Genentech”) and User and User Organization (as defined below) governs the terms on which access will be granted to the genotype data obtained from Genentech.In signing this Agreement, User and User Organization agree to be bound by the terms and conditions of access set out in this Agreement.For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User Organization (as defined below). User Organization and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly.Definitions: gRED means Genentech Research and Early Development.Data means all and any human genetic data obtained from Genentech and generated by gRED. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto.User means a researcher whose User Organization has previously completed this Data Access Agreement and has received acknowledgement of its acceptance.Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research.User Organization means the commercial organization at which the User is employed or affiliated.Genentech Data Access Committee means members of the gRED organization that is responsible for making the data access decisions for the genotype data generated by gRED.Terms and Conditions: In signing this Agreement:1.You agree to use the Data only for the advancement of medical research.2.You agree to preserve, at all times, the confidentiality of Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy.3.You agree not to attempt to link the Data provided under this Agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees.4.You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should You wish to share the Data with a collaborator outside the same Organization, the third party must make a separate application for access to the Data.5.You agree to use the Data for the approved purpose and project described in your application; use of the Data for a new purpose or project will require a new application and approval.6.You shall be free to publish the results of the research using the Data for the approved purpose. You agree to acknowledge in any such publication that the research makes use of Data generated by Genentech/gRED.7.You accept that Genentech:a.bears no legal responsibility for the accuracy or comprehensiveness of the Data; and b.accepts no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason.8.You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted.9.You recognize that nothing in this Agreement shall operate to transfer to the User Organization any intellectual property rights relating to the Data. The User Organization has the right to develop intellectual property based on the comparisons with their own data. Any invention or discovery made by User and/or User Organization arising out of the use of the Data (each a “Data Invention”) shall be promptly disclosed to Genentech in writing. User Organization hereby grants to Genentech a royalty-free, fully-paid, non-exclusive license (i) to make, use and import such Data Invention for internal research purposes; and (ii) to make, use, offer to sell, sell and import such Data Invention to the extent necessary to commercialize Genentech product(s), which license shall be sublicensable to Genentech’s affiliates and development and commercialization collaborators on such product(s). 10.You agree that you will submit a report to the Genentech Data Access Committee, if requested, on completion of the agreed purpose. The Genentech Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Organization.11.(a) You agree to use the Data in accordance with all applicable laws, including but not limited to applicable data privacy laws.(b) The Genentech Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 12.This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 13 below.13.You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. Either Party may terminate this Agreement upon thirty (30) days written notice for any reason. The following Sections of this Agreement shall survive its expiration or termination: Sections 1 – 10, 11(a), and 13. For and on behalf of User/Applicant:___________________________Signature of User/Applicant___________________________Print Name of User/Applicant___________________________Title___________________________DateFor and on behalf of User Organization:___________________________Signature of Organizational or Administrative Authority___________________________Print Name___________________________Title___________________________Name of User Organization___________________________DateFor Genentech, Inc.:___________________________Signature___________________________Print Name___________________________Title___________________________Date

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001000288	Genentech Colon Cancer Screen	Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00000116892	fastq.gz	2.2 GB	Report
EGAF00000116893	fastq.gz	2.3 GB	Report
EGAF00000116894	fastq.gz	2.5 GB	Report
EGAF00000116895	fastq.gz	2.5 GB	Report
EGAF00000116896	fastq.gz	2.0 GB	Report
EGAF00000116897	fastq.gz	2.0 GB	Report
EGAF00000116898	fastq.gz	1.3 GB	Report
EGAF00000116899	fastq.gz	1.2 GB	Report
EGAF00000116900	fastq.gz	1.1 GB	Report
EGAF00000116901	fastq.gz	990.5 MB	Report
EGAF00000116902	fastq.gz	2.3 GB	Report
EGAF00000116903	fastq.gz	2.3 GB	Report
EGAF00000116904	fastq.gz	4.2 GB	Report
EGAF00000116905	fastq.gz	4.2 GB	Report
EGAF00000116906	fastq.gz	1.9 GB	Report
EGAF00000116907	fastq.gz	1.9 GB	Report
EGAF00000116908	fastq.gz	2.2 GB	Report
EGAF00000116909	fastq.gz	2.3 GB	Report
EGAF00000116910	fastq.gz	1.9 GB	Report
EGAF00000116911	fastq.gz	1.9 GB	Report
EGAF00000116912	fastq.gz	1.7 GB	Report
EGAF00000116913	fastq.gz	1.8 GB	Report
EGAF00000116914	fastq.gz	2.3 GB	Report
EGAF00000116915	fastq.gz	2.3 GB	Report
EGAF00000116916	fastq.gz	3.6 GB	Report
EGAF00000116917	fastq.gz	3.2 GB	Report
EGAF00000116918	fastq.gz	2.4 GB	Report
EGAF00000116919	fastq.gz	2.5 GB	Report
EGAF00000116920	fastq.gz	2.5 GB	Report
EGAF00000116921	fastq.gz	2.5 GB	Report
EGAF00000116922	fastq.gz	1.8 GB	Report
EGAF00000116923	fastq.gz	1.8 GB	Report
EGAF00000116924	fastq.gz	2.0 GB	Report
EGAF00000116925	fastq.gz	1.8 GB	Report
EGAF00000116926	fastq.gz	3.6 GB	Report
EGAF00000116927	fastq.gz	3.7 GB	Report
EGAF00000116928	fastq.gz	2.3 GB	Report
EGAF00000116929	fastq.gz	2.0 GB	Report
EGAF00000116930	fastq.gz	1.8 GB	Report
EGAF00000116931	fastq.gz	1.9 GB	Report
EGAF00000116932	fastq.gz	2.2 GB	Report
EGAF00000116933	fastq.gz	2.3 GB	Report
EGAF00000116934	fastq.gz	1.8 GB	Report
EGAF00000116935	fastq.gz	1.7 GB	Report
EGAF00000116936	fastq.gz	2.8 GB	Report
EGAF00000116937	fastq.gz	2.9 GB	Report
EGAF00000116938	fastq.gz	2.0 GB	Report
EGAF00000116939	fastq.gz	2.0 GB	Report
EGAF00000116940	fastq.gz	3.1 GB	Report
EGAF00000116941	fastq.gz	3.2 GB	Report
EGAF00000116942	fastq.gz	2.5 GB	Report
EGAF00000116943	fastq.gz	2.5 GB	Report
EGAF00000116944	fastq.gz	2.5 GB	Report
EGAF00000116945	fastq.gz	2.6 GB	Report
EGAF00000116946	fastq.gz	1.9 GB	Report
EGAF00000116947	fastq.gz	1.8 GB	Report
EGAF00000116948	fastq.gz	2.2 GB	Report
EGAF00000116949	fastq.gz	2.3 GB	Report
EGAF00000116950	fastq.gz	2.3 GB	Report
EGAF00000116951	fastq.gz	2.2 GB	Report
EGAF00000116952	fastq.gz	1.8 GB	Report
EGAF00000116953	fastq.gz	1.8 GB	Report
EGAF00000116954	fastq.gz	2.7 GB	Report
EGAF00000116955	fastq.gz	2.7 GB	Report
EGAF00000116956	fastq.gz	1.9 GB	Report
EGAF00000116957	fastq.gz	1.9 GB	Report
EGAF00000116958	fastq.gz	1.7 GB	Report
EGAF00000116959	fastq.gz	1.7 GB	Report
EGAF00000116960	fastq.gz	5.1 GB	Report
EGAF00000116961	fastq.gz	5.1 GB	Report
EGAF00000116962	fastq.gz	2.3 GB	Report
EGAF00000116963	fastq.gz	2.3 GB	Report
EGAF00000116964	fastq.gz	1.9 GB	Report
EGAF00000116965	fastq.gz	1.9 GB	Report
EGAF00000116966	fastq.gz	1.6 GB	Report
EGAF00000116967	fastq.gz	1.6 GB	Report
EGAF00000116968	fastq.gz	2.8 GB	Report
EGAF00000116969	fastq.gz	2.6 GB	Report
EGAF00000116970	fastq.gz	1.4 GB	Report
EGAF00000116971	fastq.gz	1.4 GB	Report
EGAF00000116972	fastq.gz	1.7 GB	Report
EGAF00000116973	fastq.gz	1.5 GB	Report
EGAF00000116974	fastq.gz	2.2 GB	Report
EGAF00000116975	fastq.gz	2.2 GB	Report
EGAF00000116976	fastq.gz	1.7 GB	Report
EGAF00000116977	fastq.gz	1.8 GB	Report
EGAF00000116978	fastq.gz	954.4 MB	Report
EGAF00000116979	fastq.gz	954.7 MB	Report
EGAF00000116980	fastq.gz	1.2 GB	Report
EGAF00000116981	fastq.gz	1.3 GB	Report
EGAF00000116982	fastq.gz	2.9 GB	Report
EGAF00000116983	fastq.gz	2.6 GB	Report
EGAF00000116984	fastq.gz	1.5 GB	Report
EGAF00000116985	fastq.gz	1.5 GB	Report
EGAF00000116986	fastq.gz	1.9 GB	Report
EGAF00000116987	fastq.gz	2.0 GB	Report
EGAF00000116988	fastq.gz	1.2 GB	Report
EGAF00000116989	fastq.gz	1.1 GB	Report
EGAF00000116990	fastq.gz	2.3 GB	Report
EGAF00000116991	fastq.gz	2.1 GB	Report
EGAF00000116992	fastq.gz	2.1 GB	Report
EGAF00000116993	fastq.gz	2.1 GB	Report
EGAF00000116994	fastq.gz	2.5 GB	Report
EGAF00000116995	fastq.gz	2.4 GB	Report
EGAF00000116996	fastq.gz	2.5 GB	Report
EGAF00000116997	fastq.gz	2.5 GB	Report
EGAF00000116998	fastq.gz	3.1 GB	Report
EGAF00000116999	fastq.gz	2.8 GB	Report
EGAF00000117000	fastq.gz	3.1 GB	Report
EGAF00000117001	fastq.gz	3.1 GB	Report
EGAF00000117002	fastq.gz	2.4 GB	Report
EGAF00000117003	fastq.gz	2.4 GB	Report
EGAF00000117004	fastq.gz	1.3 GB	Report
EGAF00000117005	fastq.gz	1.3 GB	Report
EGAF00000117006	fastq.gz	2.6 GB	Report
EGAF00000117007	fastq.gz	2.6 GB	Report
EGAF00000117008	fastq.gz	2.0 GB	Report
EGAF00000117009	fastq.gz	2.0 GB	Report
EGAF00000117010	fastq.gz	3.3 GB	Report
EGAF00000117011	fastq.gz	3.3 GB	Report
EGAF00000117012	fastq.gz	2.4 GB	Report
EGAF00000117013	fastq.gz	2.4 GB	Report
EGAF00000117014	fastq.gz	2.4 GB	Report
EGAF00000117015	fastq.gz	2.4 GB	Report
EGAF00000117016	fastq.gz	2.3 GB	Report
EGAF00000117017	fastq.gz	2.3 GB	Report
EGAF00000117018	fastq.gz	1.8 GB	Report
EGAF00000117019	fastq.gz	1.8 GB	Report
EGAF00000117020	fastq.gz	2.5 GB	Report
EGAF00000117021	fastq.gz	2.5 GB	Report
EGAF00000117022	fastq.gz	2.3 GB	Report
EGAF00000117023	fastq.gz	2.3 GB	Report
EGAF00000117024	fastq.gz	2.3 GB	Report
EGAF00000117025	fastq.gz	2.4 GB	Report
EGAF00000117026	fastq.gz	2.4 GB	Report
EGAF00000117027	fastq.gz	2.4 GB	Report
EGAF00000117028	fastq.gz	1.8 GB	Report
EGAF00000117029	fastq.gz	1.9 GB	Report
EGAF00000117030	fastq.gz	3.0 GB	Report
EGAF00000117031	fastq.gz	2.7 GB	Report
EGAF00000117032	fastq.gz	2.7 GB	Report
EGAF00000117033	fastq.gz	2.6 GB	Report
EGAF00000117034	fastq.gz	1.6 GB	Report
EGAF00000117035	fastq.gz	1.6 GB	Report
EGAF00000117036	fastq.gz	2.5 GB	Report
EGAF00000117037	fastq.gz	2.5 GB	Report
EGAF00000117038	fastq.gz	2.1 GB	Report
EGAF00000117039	fastq.gz	2.1 GB	Report
EGAF00000117040	fastq.gz	2.7 GB	Report
EGAF00000117041	fastq.gz	2.8 GB	Report
EGAF00000117042	fastq.gz	2.3 GB	Report
EGAF00000117043	fastq.gz	2.3 GB	Report
EGAF00000117044	fastq.gz	1.9 GB	Report
EGAF00000117045	fastq.gz	1.9 GB	Report
EGAF00000117046	fastq.gz	2.3 GB	Report
EGAF00000117047	fastq.gz	2.1 GB	Report
EGAF00000117048	fastq.gz	1.3 GB	Report
EGAF00000117049	fastq.gz	1.3 GB	Report
EGAF00000117050	fastq.gz	2.3 GB	Report
EGAF00000117051	fastq.gz	2.3 GB	Report
EGAF00000117052	fastq.gz	2.3 GB	Report
EGAF00000117053	fastq.gz	2.3 GB	Report
EGAF00000117054	fastq.gz	2.0 GB	Report
EGAF00000117055	fastq.gz	2.0 GB	Report
EGAF00000117056	fastq.gz	1.6 GB	Report
EGAF00000117057	fastq.gz	1.7 GB	Report
EGAF00000117058	fastq.gz	2.7 GB	Report
EGAF00000117059	fastq.gz	2.7 GB	Report
EGAF00000117060	fastq.gz	2.2 GB	Report
EGAF00000117061	fastq.gz	2.2 GB	Report
EGAF00000117062	fastq.gz	2.3 GB	Report
EGAF00000117063	fastq.gz	2.3 GB	Report
EGAF00000117064	fastq.gz	3.2 GB	Report
EGAF00000117065	fastq.gz	3.2 GB	Report
EGAF00000117066	fastq.gz	2.4 GB	Report
EGAF00000117067	fastq.gz	2.3 GB	Report
EGAF00000117068	fastq.gz	1.7 GB	Report
EGAF00000117069	fastq.gz	1.7 GB	Report
EGAF00000117070	fastq.gz	2.3 GB	Report
EGAF00000117071	fastq.gz	2.3 GB	Report
EGAF00000117072	fastq.gz	2.5 GB	Report
EGAF00000117073	fastq.gz	2.5 GB	Report
EGAF00000117074	fastq.gz	2.5 GB	Report
EGAF00000117075	fastq.gz	2.6 GB	Report
EGAF00000117076	fastq.gz	2.7 GB	Report
EGAF00000117077	fastq.gz	2.7 GB	Report
EGAF00000117078	fastq.gz	2.5 GB	Report
EGAF00000117079	fastq.gz	2.3 GB	Report
EGAF00000117080	fastq.gz	2.7 GB	Report
EGAF00000117081	fastq.gz	2.4 GB	Report
EGAF00000117082	fastq.gz	2.7 GB	Report
EGAF00000117083	fastq.gz	2.5 GB	Report
EGAF00000117084	fastq.gz	2.1 GB	Report
EGAF00000117085	fastq.gz	2.1 GB	Report
EGAF00000117086	fastq.gz	2.7 GB	Report
EGAF00000117087	fastq.gz	2.8 GB	Report
EGAF00000117088	fastq.gz	5.2 GB	Report
EGAF00000117089	fastq.gz	5.2 GB	Report
EGAF00000117090	fastq.gz	2.8 GB	Report
EGAF00000117091	fastq.gz	2.8 GB	Report
EGAF00000117092	fastq.gz	1.5 GB	Report
EGAF00000117093	fastq.gz	1.5 GB	Report
EGAF00000117094	fastq.gz	1.5 GB	Report
EGAF00000117095	fastq.gz	1.5 GB	Report
EGAF00000117096	fastq.gz	2.3 GB	Report
EGAF00000117097	fastq.gz	2.3 GB	Report
EGAF00000117098	fastq.gz	2.5 GB	Report
EGAF00000117099	fastq.gz	2.5 GB	Report
EGAF00000117100	fastq.gz	1.9 GB	Report
EGAF00000117101	fastq.gz	1.9 GB	Report
EGAF00000117102	fastq.gz	2.1 GB	Report
EGAF00000117103	fastq.gz	1.9 GB	Report
EGAF00000117104	fastq.gz	1.8 GB	Report
EGAF00000117105	fastq.gz	1.8 GB	Report
EGAF00000117106	fastq.gz	1.6 GB	Report
EGAF00000117107	fastq.gz	1.6 GB	Report
EGAF00000117108	fastq.gz	2.0 GB	Report
EGAF00000117109	fastq.gz	2.0 GB	Report
EGAF00000117110	fastq.gz	1.8 GB	Report
EGAF00000117111	fastq.gz	1.9 GB	Report
EGAF00000117112	fastq.gz	2.6 GB	Report
EGAF00000117113	fastq.gz	2.6 GB	Report
EGAF00000117114	fastq.gz	1.9 GB	Report
EGAF00000117115	fastq.gz	1.9 GB	Report
EGAF00000117116	fastq.gz	2.4 GB	Report
EGAF00000117117	fastq.gz	2.4 GB	Report
EGAF00000117118	fastq.gz	1.0 GB	Report
EGAF00000117119	fastq.gz	1.0 GB	Report
EGAF00000117120	fastq.gz	1.6 GB	Report
EGAF00000117121	fastq.gz	1.6 GB	Report
EGAF00000117122	fastq.gz	1.2 GB	Report
EGAF00000117123	fastq.gz	1.2 GB	Report
EGAF00000117124	fastq.gz	2.4 GB	Report
EGAF00000117125	fastq.gz	2.4 GB	Report
EGAF00000117126	fastq.gz	2.3 GB	Report
EGAF00000117127	fastq.gz	2.3 GB	Report
EGAF00000117128	fastq.gz	2.0 GB	Report
EGAF00000117129	fastq.gz	2.0 GB	Report
EGAF00000117130	fastq.gz	2.2 GB	Report
EGAF00000117131	fastq.gz	2.2 GB	Report
EGAF00000117132	fastq.gz	2.2 GB	Report
EGAF00000117133	fastq.gz	2.3 GB	Report
EGAF00000117134	fastq.gz	2.3 GB	Report
EGAF00000117135	fastq.gz	2.3 GB	Report
EGAF00000117136	fastq.gz	2.4 GB	Report
EGAF00000117137	fastq.gz	2.5 GB	Report
EGAF00000117138	fastq.gz	2.0 GB	Report
EGAF00000117139	fastq.gz	2.0 GB	Report
EGAF00000117140	fastq.gz	1.3 GB	Report
EGAF00000117141	fastq.gz	1.4 GB	Report
EGAF00000117142	fastq.gz	2.4 GB	Report
EGAF00000117143	fastq.gz	2.5 GB	Report
EGAF00000117144	fastq.gz	2.0 GB	Report
EGAF00000117145	fastq.gz	2.0 GB	Report
EGAF00000117146	fastq.gz	2.6 GB	Report
EGAF00000117147	fastq.gz	2.6 GB	Report
EGAF00000117148	fastq.gz	2.4 GB	Report
EGAF00000117149	fastq.gz	2.2 GB	Report
EGAF00000117150	fastq.gz	3.0 GB	Report
EGAF00000117151	fastq.gz	2.8 GB	Report
EGAF00000117152	fastq.gz	1.1 GB	Report
EGAF00000117153	fastq.gz	1.1 GB	Report
EGAF00000117154	fastq.gz	2.2 GB	Report
EGAF00000117155	fastq.gz	2.2 GB	Report
EGAF00000117156	fastq.gz	2.3 GB	Report
EGAF00000117157	fastq.gz	2.3 GB	Report
EGAF00000117158	fastq.gz	2.2 GB	Report
EGAF00000117159	fastq.gz	2.2 GB	Report
EGAF00000117160	fastq.gz	2.5 GB	Report
EGAF00000117161	fastq.gz	2.5 GB	Report
EGAF00000117162	fastq.gz	2.7 GB	Report
EGAF00000117163	fastq.gz	2.4 GB	Report
EGAF00000117164	fastq.gz	1.8 GB	Report
EGAF00000117165	fastq.gz	1.9 GB	Report
EGAF00000117166	fastq.gz	3.3 GB	Report
EGAF00000117167	fastq.gz	3.3 GB	Report
EGAF00000117168	fastq.gz	2.7 GB	Report
EGAF00000117169	fastq.gz	2.7 GB	Report
278 Files (622.3 GB)