About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Exome capture sequencing of colon tumor/normal pairs

Exome capture sequencing of colon tumor/normal pairs

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GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT

GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT WITH COMMERCIAL ORGANIZATIONThis Data Access Agreement (“Agreement”) between Genentech, Inc. (“Genentech”) and User and User Organization (as defined below) governs the terms on which access will be granted to the genotype data obtained from Genentech.In signing this Agreement, User and User Organization agree to be bound by the terms and conditions of access set out in this Agreement.For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User Organization (as defined below). User Organization and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly.Definitions: gRED means Genentech Research and Early Development.Data means all and any human genetic data obtained from Genentech and generated by gRED. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto.User means a researcher whose User Organization has previously completed this Data Access Agreement and has received acknowledgement of its acceptance.Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research.User Organization means the commercial organization at which the User is employed or affiliated.Genentech Data Access Committee means members of the gRED organization that is responsible for making the data access decisions for the genotype data generated by gRED.Terms and Conditions: In signing this Agreement:1.You agree to use the Data only for the advancement of medical research.2.You agree to preserve, at all times, the confidentiality of Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy.3.You agree not to attempt to link the Data provided under this Agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees.4.You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should You wish to share the Data with a collaborator outside the same Organization, the third party must make a separate application for access to the Data.5.You agree to use the Data for the approved purpose and project described in your application; use of the Data for a new purpose or project will require a new application and approval.6.You shall be free to publish the results of the research using the Data for the approved purpose. You agree to acknowledge in any such publication that the research makes use of Data generated by Genentech/gRED.7.You accept that Genentech:a.bears no legal responsibility for the accuracy or comprehensiveness of the Data; and b.accepts no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason.8.You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted.9.You recognize that nothing in this Agreement shall operate to transfer to the User Organization any intellectual property rights relating to the Data. The User Organization has the right to develop intellectual property based on the comparisons with their own data. Any invention or discovery made by User and/or User Organization arising out of the use of the Data (each a “Data Invention”) shall be promptly disclosed to Genentech in writing. User Organization hereby grants to Genentech a royalty-free, fully-paid, non-exclusive license (i) to make, use and import such Data Invention for internal research purposes; and (ii) to make, use, offer to sell, sell and import such Data Invention to the extent necessary to commercialize Genentech product(s), which license shall be sublicensable to Genentech’s affiliates and development and commercialization collaborators on such product(s). 10.You agree that you will submit a report to the Genentech Data Access Committee, if requested, on completion of the agreed purpose. The Genentech Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Organization.11.(a) You agree to use the Data in accordance with all applicable laws, including but not limited to applicable data privacy laws.(b) The Genentech Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 12.This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 13 below.13.You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. Either Party may terminate this Agreement upon thirty (30) days written notice for any reason. The following Sections of this Agreement shall survive its expiration or termination: Sections 1 – 10, 11(a), and 13. For and on behalf of User/Applicant:___________________________Signature of User/Applicant___________________________Print Name of User/Applicant___________________________Title___________________________DateFor and on behalf of User Organization:___________________________Signature of Organizational or Administrative Authority___________________________Print Name___________________________Title___________________________Name of User Organization___________________________DateFor Genentech, Inc.:___________________________Signature___________________________Print Name___________________________Title___________________________Date

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000288 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00000116604 fastq.gz 6.3 GB Report
EGAF00000116605 fastq.gz 6.2 GB Report
EGAF00000116606 fastq.gz 6.7 GB Report
EGAF00000116607 fastq.gz 6.6 GB Report
EGAF00000116608 fastq.gz 6.9 GB Report
EGAF00000116609 fastq.gz 6.9 GB Report
EGAF00000116610 fastq.gz 6.2 GB Report
EGAF00000116611 fastq.gz 6.0 GB Report
EGAF00000116612 fastq.gz 6.1 GB Report
EGAF00000116613 fastq.gz 6.2 GB Report
EGAF00000116614 fastq.gz 6.8 GB Report
EGAF00000116615 fastq.gz 6.7 GB Report
EGAF00000116616 fastq.gz 5.6 GB Report
EGAF00000116617 fastq.gz 5.5 GB Report
EGAF00000116618 fastq.gz 8.4 GB Report
EGAF00000116619 fastq.gz 8.4 GB Report
EGAF00000116620 fastq.gz 10.2 GB Report
EGAF00000116621 fastq.gz 10.4 GB Report
EGAF00000116622 fastq.gz 5.7 GB Report
EGAF00000116623 fastq.gz 5.6 GB Report
EGAF00000116624 fastq.gz 6.1 GB Report
EGAF00000116625 fastq.gz 6.2 GB Report
EGAF00000116626 fastq.gz 6.2 GB Report
EGAF00000116627 fastq.gz 6.2 GB Report
EGAF00000116628 fastq.gz 8.8 GB Report
EGAF00000116629 fastq.gz 8.9 GB Report
EGAF00000116630 fastq.gz 6.0 GB Report
EGAF00000116631 fastq.gz 5.9 GB Report
EGAF00000116632 fastq.gz 7.6 GB Report
EGAF00000116633 fastq.gz 7.6 GB Report
EGAF00000116634 fastq.gz 8.9 GB Report
EGAF00000116635 fastq.gz 9.0 GB Report
EGAF00000116636 fastq.gz 6.8 GB Report
EGAF00000116637 fastq.gz 6.8 GB Report
EGAF00000116638 fastq.gz 7.3 GB Report
EGAF00000116639 fastq.gz 7.4 GB Report
EGAF00000116640 fastq.gz 5.6 GB Report
EGAF00000116641 fastq.gz 5.7 GB Report
EGAF00000116642 fastq.gz 5.3 GB Report
EGAF00000116643 fastq.gz 5.3 GB Report
EGAF00000116644 fastq.gz 7.4 GB Report
EGAF00000116645 fastq.gz 7.4 GB Report
EGAF00000116646 fastq.gz 9.0 GB Report
EGAF00000116647 fastq.gz 9.1 GB Report
EGAF00000116648 fastq.gz 6.6 GB Report
EGAF00000116649 fastq.gz 6.6 GB Report
EGAF00000116650 fastq.gz 6.9 GB Report
EGAF00000116651 fastq.gz 6.9 GB Report
EGAF00000116652 fastq.gz 9.1 GB Report
EGAF00000116653 fastq.gz 9.3 GB Report
EGAF00000116654 fastq.gz 6.1 GB Report
EGAF00000116655 fastq.gz 6.1 GB Report
EGAF00000116656 fastq.gz 4.8 GB Report
EGAF00000116657 fastq.gz 4.9 GB Report
EGAF00000116658 fastq.gz 7.0 GB Report
EGAF00000116659 fastq.gz 7.0 GB Report
EGAF00000116660 fastq.gz 6.2 GB Report
EGAF00000116661 fastq.gz 6.3 GB Report
EGAF00000116662 fastq.gz 7.3 GB Report
EGAF00000116663 fastq.gz 7.4 GB Report
EGAF00000116664 fastq.gz 5.8 GB Report
EGAF00000116665 fastq.gz 5.9 GB Report
EGAF00000116666 fastq.gz 9.1 GB Report
EGAF00000116667 fastq.gz 9.3 GB Report
EGAF00000116668 fastq.gz 5.9 GB Report
EGAF00000116669 fastq.gz 6.0 GB Report
EGAF00000116670 fastq.gz 6.9 GB Report
EGAF00000116671 fastq.gz 7.0 GB Report
EGAF00000116672 fastq.gz 9.6 GB Report
EGAF00000116673 fastq.gz 9.8 GB Report
EGAF00000116674 fastq.gz 8.9 GB Report
EGAF00000116675 fastq.gz 9.0 GB Report
EGAF00000116676 fastq.gz 19.5 GB Report
EGAF00000116677 fastq.gz 19.8 GB Report
EGAF00000116678 fastq.gz 5.1 GB Report
EGAF00000116679 fastq.gz 5.1 GB Report
EGAF00000116680 fastq.gz 5.9 GB Report
EGAF00000116681 fastq.gz 5.8 GB Report
EGAF00000116682 fastq.gz 5.5 GB Report
EGAF00000116683 fastq.gz 5.6 GB Report
EGAF00000116684 fastq.gz 6.4 GB Report
EGAF00000116685 fastq.gz 6.3 GB Report
EGAF00000116686 fastq.gz 6.1 GB Report
EGAF00000116687 fastq.gz 6.2 GB Report
EGAF00000116688 fastq.gz 8.5 GB Report
EGAF00000116689 fastq.gz 8.6 GB Report
EGAF00000116690 fastq.gz 8.0 GB Report
EGAF00000116691 fastq.gz 8.2 GB Report
EGAF00000116692 fastq.gz 5.5 GB Report
EGAF00000116693 fastq.gz 5.5 GB Report
EGAF00000116694 fastq.gz 7.7 GB Report
EGAF00000116695 fastq.gz 7.9 GB Report
EGAF00000116696 fastq.gz 8.0 GB Report
EGAF00000116697 fastq.gz 8.2 GB Report
EGAF00000116698 fastq.gz 5.6 GB Report
EGAF00000116699 fastq.gz 5.6 GB Report
EGAF00000116700 fastq.gz 6.8 GB Report
EGAF00000116701 fastq.gz 6.9 GB Report
EGAF00000116702 fastq.gz 7.3 GB Report
EGAF00000116703 fastq.gz 7.2 GB Report
EGAF00000116704 fastq.gz 6.4 GB Report
EGAF00000116705 fastq.gz 6.5 GB Report
EGAF00000116706 fastq.gz 6.4 GB Report
EGAF00000116707 fastq.gz 6.4 GB Report
EGAF00000116708 fastq.gz 5.5 GB Report
EGAF00000116709 fastq.gz 5.5 GB Report
EGAF00000116710 fastq.gz 6.1 GB Report
EGAF00000116711 fastq.gz 6.1 GB Report
EGAF00000116712 fastq.gz 6.3 GB Report
EGAF00000116713 fastq.gz 6.4 GB Report
EGAF00000116714 fastq.gz 5.6 GB Report
EGAF00000116715 fastq.gz 5.6 GB Report
EGAF00000116716 fastq.gz 4.9 GB Report
EGAF00000116717 fastq.gz 4.8 GB Report
EGAF00000116718 fastq.gz 6.5 GB Report
EGAF00000116719 fastq.gz 6.6 GB Report
EGAF00000116720 fastq.gz 5.7 GB Report
EGAF00000116721 fastq.gz 5.7 GB Report
EGAF00000116722 fastq.gz 7.6 GB Report
EGAF00000116723 fastq.gz 7.8 GB Report
EGAF00000116724 fastq.gz 7.0 GB Report
EGAF00000116725 fastq.gz 7.0 GB Report
EGAF00000116726 fastq.gz 5.0 GB Report
EGAF00000116727 fastq.gz 5.0 GB Report
EGAF00000116728 fastq.gz 8.3 GB Report
EGAF00000116729 fastq.gz 8.3 GB Report
EGAF00000116730 fastq.gz 7.2 GB Report
EGAF00000116731 fastq.gz 7.3 GB Report
EGAF00000116732 fastq.gz 6.5 GB Report
EGAF00000116733 fastq.gz 6.5 GB Report
EGAF00000116734 fastq.gz 5.3 GB Report
EGAF00000116735 fastq.gz 5.3 GB Report
EGAF00000116736 fastq.gz 8.1 GB Report
EGAF00000116737 fastq.gz 8.2 GB Report
EGAF00000116738 fastq.gz 6.8 GB Report
EGAF00000116739 fastq.gz 6.9 GB Report
EGAF00000116740 fastq.gz 6.0 GB Report
EGAF00000116741 fastq.gz 6.0 GB Report
EGAF00000116742 fastq.gz 6.0 GB Report
EGAF00000116743 fastq.gz 5.9 GB Report
EGAF00000116744 fastq.gz 5.4 GB Report
EGAF00000116745 fastq.gz 5.2 GB Report
EGAF00000116746 fastq.gz 4.4 GB Report
EGAF00000116747 fastq.gz 4.4 GB Report
EGAF00000116748 fastq.gz 15.7 GB Report
EGAF00000116749 fastq.gz 15.7 GB Report
EGAF00000116750 fastq.gz 4.6 GB Report
EGAF00000116751 fastq.gz 4.6 GB Report
EGAF00000116752 fastq.gz 5.7 GB Report
EGAF00000116753 fastq.gz 5.7 GB Report
EGAF00000116754 fastq.gz 6.8 GB Report
EGAF00000116755 fastq.gz 6.9 GB Report
EGAF00000116756 fastq.gz 6.8 GB Report
EGAF00000116757 fastq.gz 6.9 GB Report
EGAF00000116758 fastq.gz 5.9 GB Report
EGAF00000116759 fastq.gz 5.4 GB Report
EGAF00000116760 fastq.gz 14.0 GB Report
EGAF00000116761 fastq.gz 14.3 GB Report
EGAF00000116762 fastq.gz 6.3 GB Report
EGAF00000116763 fastq.gz 6.4 GB Report
EGAF00000116764 fastq.gz 5.5 GB Report
EGAF00000116765 fastq.gz 5.5 GB Report
EGAF00000116766 fastq.gz 6.5 GB Report
EGAF00000116767 fastq.gz 6.3 GB Report
EGAF00000116768 fastq.gz 6.3 GB Report
EGAF00000116769 fastq.gz 6.3 GB Report
EGAF00000116770 fastq.gz 6.8 GB Report
EGAF00000116771 fastq.gz 6.9 GB Report
EGAF00000116772 fastq.gz 6.5 GB Report
EGAF00000116773 fastq.gz 6.5 GB Report
EGAF00000116774 fastq.gz 4.9 GB Report
EGAF00000116775 fastq.gz 4.9 GB Report
EGAF00000116776 fastq.gz 5.7 GB Report
EGAF00000116777 fastq.gz 5.6 GB Report
EGAF00000116778 fastq.gz 5.3 GB Report
EGAF00000116779 fastq.gz 5.3 GB Report
EGAF00000116780 fastq.gz 5.9 GB Report
EGAF00000116781 fastq.gz 5.9 GB Report
EGAF00000116782 fastq.gz 5.9 GB Report
EGAF00000116783 fastq.gz 6.0 GB Report
EGAF00000116784 fastq.gz 6.0 GB Report
EGAF00000116785 fastq.gz 6.0 GB Report
EGAF00000116786 fastq.gz 5.8 GB Report
EGAF00000116787 fastq.gz 5.8 GB Report
EGAF00000116788 fastq.gz 7.5 GB Report
EGAF00000116789 fastq.gz 7.6 GB Report
EGAF00000116790 fastq.gz 5.3 GB Report
EGAF00000116791 fastq.gz 5.1 GB Report
EGAF00000116792 fastq.gz 4.9 GB Report
EGAF00000116793 fastq.gz 4.9 GB Report
EGAF00000116794 fastq.gz 5.0 GB Report
EGAF00000116795 fastq.gz 5.0 GB Report
EGAF00000116796 fastq.gz 5.6 GB Report
EGAF00000116797 fastq.gz 5.7 GB Report
EGAF00000116798 fastq.gz 5.8 GB Report
EGAF00000116799 fastq.gz 5.9 GB Report
EGAF00000116800 fastq.gz 9.1 GB Report
EGAF00000116801 fastq.gz 9.1 GB Report
EGAF00000116802 fastq.gz 5.0 GB Report
EGAF00000116803 fastq.gz 4.9 GB Report
EGAF00000116804 fastq.gz 5.2 GB Report
EGAF00000116805 fastq.gz 5.2 GB Report
EGAF00000116806 fastq.gz 5.5 GB Report
EGAF00000116807 fastq.gz 5.5 GB Report
EGAF00000116808 fastq.gz 5.2 GB Report
EGAF00000116809 fastq.gz 5.1 GB Report
EGAF00000116810 fastq.gz 5.5 GB Report
EGAF00000116811 fastq.gz 5.5 GB Report
EGAF00000116812 fastq.gz 10.1 GB Report
EGAF00000116813 fastq.gz 9.8 GB Report
EGAF00000116814 fastq.gz 4.9 GB Report
EGAF00000116815 fastq.gz 4.9 GB Report
EGAF00000116816 fastq.gz 6.6 GB Report
EGAF00000116817 fastq.gz 6.7 GB Report
EGAF00000116818 fastq.gz 6.4 GB Report
EGAF00000116819 fastq.gz 6.5 GB Report
EGAF00000116820 fastq.gz 5.3 GB Report
EGAF00000116821 fastq.gz 5.3 GB Report
EGAF00000116822 fastq.gz 5.2 GB Report
EGAF00000116823 fastq.gz 5.2 GB Report
EGAF00000116824 fastq.gz 5.0 GB Report
EGAF00000116825 fastq.gz 5.0 GB Report
EGAF00000116826 fastq.gz 6.2 GB Report
EGAF00000116827 fastq.gz 6.4 GB Report
EGAF00000116828 fastq.gz 6.7 GB Report
EGAF00000116829 fastq.gz 6.7 GB Report
EGAF00000116830 fastq.gz 6.5 GB Report
EGAF00000116831 fastq.gz 6.5 GB Report
EGAF00000116832 fastq.gz 7.1 GB Report
EGAF00000116833 fastq.gz 7.1 GB Report
EGAF00000116834 fastq.gz 6.4 GB Report
EGAF00000116835 fastq.gz 6.4 GB Report
EGAF00000116836 fastq.gz 5.2 GB Report
EGAF00000116837 fastq.gz 5.1 GB Report
EGAF00000116838 fastq.gz 5.1 GB Report
EGAF00000116839 fastq.gz 5.1 GB Report
EGAF00000116840 fastq.gz 6.8 GB Report
EGAF00000116841 fastq.gz 6.9 GB Report
EGAF00000116842 fastq.gz 4.9 GB Report
EGAF00000116843 fastq.gz 4.9 GB Report
EGAF00000116844 fastq.gz 6.2 GB Report
EGAF00000116845 fastq.gz 6.3 GB Report
EGAF00000116846 fastq.gz 7.0 GB Report
EGAF00000116847 fastq.gz 7.1 GB Report
EGAF00000116848 fastq.gz 7.2 GB Report
EGAF00000116849 fastq.gz 7.3 GB Report
EGAF00000116850 fastq.gz 5.7 GB Report
EGAF00000116851 fastq.gz 5.7 GB Report
EGAF00000116852 fastq.gz 5.5 GB Report
EGAF00000116853 fastq.gz 5.3 GB Report
EGAF00000116854 fastq.gz 6.3 GB Report
EGAF00000116855 fastq.gz 6.4 GB Report
EGAF00000116856 fastq.gz 5.5 GB Report
EGAF00000116857 fastq.gz 5.6 GB Report
EGAF00000116858 fastq.gz 20.7 GB Report
EGAF00000116859 fastq.gz 21.2 GB Report
EGAF00000116860 fastq.gz 6.0 GB Report
EGAF00000116861 fastq.gz 6.1 GB Report
EGAF00000116862 fastq.gz 5.2 GB Report
EGAF00000116863 fastq.gz 5.2 GB Report
EGAF00000116864 fastq.gz 5.7 GB Report
EGAF00000116865 fastq.gz 5.8 GB Report
EGAF00000116866 fastq.gz 6.3 GB Report
EGAF00000116867 fastq.gz 6.3 GB Report
EGAF00000116868 fastq.gz 7.9 GB Report
EGAF00000116869 fastq.gz 8.0 GB Report
EGAF00000116870 fastq.gz 5.5 GB Report
EGAF00000116871 fastq.gz 5.5 GB Report
EGAF00000116872 fastq.gz 5.1 GB Report
EGAF00000116873 fastq.gz 5.1 GB Report
EGAF00000116874 fastq.gz 6.2 GB Report
EGAF00000116875 fastq.gz 6.1 GB Report
EGAF00000116876 fastq.gz 5.3 GB Report
EGAF00000116877 fastq.gz 5.2 GB Report
EGAF00000116878 fastq.gz 5.8 GB Report
EGAF00000116879 fastq.gz 5.8 GB Report
EGAF00000116880 fastq.gz 7.2 GB Report
EGAF00000116881 fastq.gz 7.3 GB Report
EGAF00000116882 fastq.gz 5.9 GB Report
EGAF00000116883 fastq.gz 6.0 GB Report
EGAF00000116884 fastq.gz 6.4 GB Report
EGAF00000116885 fastq.gz 6.4 GB Report
EGAF00000116886 fastq.gz 4.7 GB Report
EGAF00000116887 fastq.gz 4.7 GB Report
EGAF00000116888 fastq.gz 6.0 GB Report
EGAF00000116889 fastq.gz 6.0 GB Report
EGAF00000116890 fastq.gz 8.8 GB Report
EGAF00000116891 fastq.gz 8.8 GB Report
288 Files (1.9 TB)