Myelodysplastic syndrome whole genomes

Dataset ID Technology Samples
EGAD00001000386 Illumina HiSeq 2000 83

Dataset Description

Wholegenome libraries will be prepared from at least two serial samples reflecting different stages of disease progression and matched constitutional DNA for 30 Myelodysplastic syndrome patient samples. Five lanes of Illumina HiSeq sequencing will be performed on each of the tumour samples and four lanes for each of the constitutional DNA. Sequencing data will mapped to build 37 of the human reference genome and analysis will be performed to characterize the spectrum of somatic variation present in these samples including single base pair mutations, insertions, deletions as well as larger structural variants and genomic rearrangements.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

ICGC Data Access Compliance Office
Contact person: helpdesk
Email: daco [at] icgc-argo [dot] org
Access information:
More details: EGAC00001000010


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