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Assessment of genetic and epigenetic variation in human IPS cells-RNA

In order to progress human induced pluripotent stem cells (hiPSCs) towards the clinic, several outstanding questions must be addressed. It is possible to reprogram different somatic cell types into hiPSCs and from studies in the mouse, it appears that an epigenetic memory of the starting cell type is carried over to hiPSCs. However a comprehensive comparative study of the characteristics of these hiPSCs has been missing from the literature. Importantly studies which aimed to address these aspects of hiPSCs have used cells from different patients. In order to avoid this important confounding variable and to keep the genetic background constant, tissue samples were procured from the patients and reprogrammed to iPS cells. The transcriptomes of these iPS cells will be compared. Protocol: primary cultures of cells were reprogrammed to iPS cells. RNA was extracted using a standard column extraction kit.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000367 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000151912 bam 7.3 GB
EGAF00000151913 bam 6.9 GB
EGAF00000151914 bam 9.1 GB
EGAF00000151915 bam 9.2 GB
EGAF00000151916 bam 7.7 GB
EGAF00000151917 bam 7.6 GB
EGAF00000151918 bam 7.1 GB
EGAF00000151919 bam 7.2 GB
EGAF00000151920 bam 6.8 GB
EGAF00000151921 bam 6.5 GB
EGAF00000151922 bam 7.1 GB
EGAF00000151923 bam 7.6 GB
EGAF00000151924 bam 7.8 GB
EGAF00000151925 bam 7.7 GB
EGAF00000151926 bam 7.1 GB
EGAF00000151927 bam 8.2 GB
EGAF00000151928 bam 7.9 GB
EGAF00000151929 bam 6.9 GB
EGAF00000151930 bam 14.6 GB
EGAF00000151931 bam 2.1 GB
EGAF00000151932 bam 2.1 GB
EGAF00000151933 bam 2.2 GB
EGAF00000151934 bam 2.5 GB
EGAF00000151935 bam 1.9 GB
EGAF00000151936 bam 2.3 GB
EGAF00000151937 bam 2.0 GB
EGAF00000151938 bam 2.0 GB
EGAF00000151939 bam 2.2 GB
EGAF00000151940 bam 2.1 GB
EGAF00000151941 bam 2.0 GB
EGAF00000151942 bam 1.9 GB
EGAF00000151943 bam 2.1 GB
EGAF00000151944 bam 2.0 GB
EGAF00000151945 bam 2.1 GB
EGAF00000151946 bam 2.4 GB
EGAF00000151947 bam 2.5 GB
EGAF00000151948 bam 2.3 GB
EGAF00000151949 bam 2.4 GB
EGAF00000151950 bam 2.2 GB
EGAF00000151951 bam 2.2 GB
EGAF00000151952 bam 2.1 GB
EGAF00000151953 bam 2.0 GB
EGAF00000151954 bam 2.2 GB
EGAF00000151955 bam 2.1 GB
EGAF00000151956 bam 2.1 GB
EGAF00000151957 bam 2.0 GB
EGAF00000151958 bam 2.3 GB
EGAF00000151959 bam 2.1 GB
EGAF00000151960 bam 2.4 GB
EGAF00000151961 bam 2.6 GB
EGAF00000151962 bam 2.4 GB
EGAF00000151963 bam 2.5 GB
EGAF00000151964 bam 2.2 GB
EGAF00000151965 bam 2.3 GB
EGAF00000151966 bam 2.1 GB
EGAF00000151967 bam 2.0 GB
EGAF00000151968 bam 2.3 GB
EGAF00000151969 bam 2.1 GB
EGAF00000151970 bam 2.1 GB
EGAF00000151971 bam 2.0 GB
EGAF00000151972 bam 2.3 GB
EGAF00000151973 bam 2.1 GB
EGAF00000151974 bam 2.2 GB
EGAF00000151975 bam 2.2 GB
EGAF00000151976 bam 2.5 GB
EGAF00000151977 bam 2.0 GB
EGAF00000151978 bam 2.3 GB
EGAF00000151979 bam 2.0 GB
EGAF00000151980 bam 2.1 GB
EGAF00000151981 bam 2.3 GB
EGAF00000151982 bam 2.1 GB
EGAF00000151983 bam 2.0 GB
EGAF00000151984 bam 2.0 GB
EGAF00000151985 bam 2.1 GB
EGAF00000151986 bam 2.0 GB
EGAF00000151987 bam 2.1 GB
EGAF00000151988 bam 2.1 GB
EGAF00000151989 bam 2.2 GB
EGAF00000151990 bam 2.5 GB
EGAF00000151991 bam 1.9 GB
EGAF00000151992 bam 2.3 GB
EGAF00000151993 bam 2.0 GB
EGAF00000151994 bam 2.0 GB
EGAF00000151995 bam 2.2 GB
EGAF00000151996 bam 2.1 GB
EGAF00000151997 bam 2.0 GB
EGAF00000151998 bam 1.9 GB
EGAF00000151999 bam 2.1 GB
EGAF00000152000 bam 2.0 GB
EGAF00000152001 bam 1.8 GB
EGAF00000152002 bam 2.1 GB
EGAF00000152003 bam 2.2 GB
EGAF00000152004 bam 2.1 GB
EGAF00000152005 bam 2.1 GB
EGAF00000152006 bam 1.9 GB
EGAF00000152007 bam 2.0 GB
EGAF00000152008 bam 1.9 GB
EGAF00000152009 bam 1.8 GB
EGAF00000152010 bam 2.0 GB
EGAF00000152011 bam 1.8 GB
EGAF00000152012 bam 1.9 GB
EGAF00000152013 bam 1.8 GB
EGAF00000152014 bam 2.0 GB
EGAF00000152015 bam 2.1 GB
EGAF00000152016 bam 2.4 GB
EGAF00000152017 bam 2.5 GB
EGAF00000152018 bam 2.3 GB
EGAF00000152019 bam 2.4 GB
EGAF00000152020 bam 2.2 GB
EGAF00000152021 bam 2.3 GB
EGAF00000152022 bam 2.1 GB
EGAF00000152023 bam 2.0 GB
EGAF00000152024 bam 2.2 GB
EGAF00000152025 bam 2.1 GB
EGAF00000152026 bam 2.1 GB
EGAF00000152027 bam 2.0 GB
EGAF00000152028 bam 2.3 GB
EGAF00000152029 bam 2.1 GB
EGAF00000152030 bam 2.4 GB
EGAF00000152031 bam 2.5 GB
EGAF00000152032 bam 2.3 GB
EGAF00000152033 bam 2.4 GB
EGAF00000152034 bam 2.2 GB
EGAF00000152035 bam 2.3 GB
EGAF00000152036 bam 2.1 GB
EGAF00000152037 bam 2.0 GB
EGAF00000152038 bam 2.3 GB
EGAF00000152039 bam 2.1 GB
EGAF00000152040 bam 2.1 GB
EGAF00000152041 bam 2.0 GB
EGAF00000152042 bam 2.3 GB
EGAF00000152043 bam 2.1 GB
EGAF00000152044 bam 2.4 GB
EGAF00000152045 bam 2.5 GB
EGAF00000152046 bam 2.3 GB
EGAF00000152047 bam 2.4 GB
EGAF00000152048 bam 2.2 GB
EGAF00000152049 bam 2.3 GB
EGAF00000152050 bam 2.1 GB
EGAF00000152051 bam 2.0 GB
EGAF00000152052 bam 2.2 GB
EGAF00000152053 bam 2.1 GB
EGAF00000152054 bam 2.1 GB
EGAF00000152055 bam 2.0 GB
EGAF00000152056 bam 2.3 GB
EGAF00000152057 bam 2.0 GB
EGAF00000152058 bam 2.3 GB
EGAF00000152059 bam 2.5 GB
EGAF00000152060 bam 2.3 GB
EGAF00000152061 bam 2.4 GB
EGAF00000152062 bam 2.1 GB
EGAF00000152063 bam 2.2 GB
EGAF00000152064 bam 2.1 GB
EGAF00000152065 bam 1.9 GB
EGAF00000152066 bam 2.2 GB
EGAF00000152067 bam 2.0 GB
EGAF00000152068 bam 2.1 GB
EGAF00000152069 bam 2.0 GB
EGAF00000152070 bam 2.3 GB
EGAF00000152071 bam 2.0 GB
EGAF00000152072 bam 2.1 GB
EGAF00000152073 bam 2.1 GB
EGAF00000152074 bam 2.4 GB
EGAF00000152075 bam 1.9 GB
EGAF00000152076 bam 2.2 GB
EGAF00000152077 bam 2.0 GB
EGAF00000152078 bam 2.0 GB
EGAF00000152079 bam 2.2 GB
EGAF00000152080 bam 2.0 GB
EGAF00000152081 bam 2.0 GB
EGAF00000152082 bam 1.9 GB
EGAF00000152083 bam 2.0 GB
EGAF00000152084 bam 2.0 GB
EGAF00000152085 bam 2.0 GB
EGAF00000152086 bam 2.1 GB
EGAF00000152087 bam 2.1 GB
EGAF00000152088 bam 2.4 GB
EGAF00000152089 bam 1.9 GB
EGAF00000152090 bam 2.2 GB
EGAF00000152091 bam 2.0 GB
EGAF00000152092 bam 2.0 GB
EGAF00000152093 bam 2.2 GB
EGAF00000152094 bam 2.0 GB
EGAF00000152095 bam 2.0 GB
EGAF00000152096 bam 1.9 GB
EGAF00000152097 bam 2.0 GB
EGAF00000152098 bam 2.0 GB
EGAF00000152099 bam 2.0 GB
EGAF00000152100 bam 2.1 GB
EGAF00000152101 bam 2.1 GB
EGAF00000152102 bam 2.4 GB
EGAF00000152103 bam 1.9 GB
EGAF00000152104 bam 2.2 GB
EGAF00000152105 bam 2.0 GB
EGAF00000152106 bam 2.0 GB
EGAF00000152107 bam 2.2 GB
EGAF00000152108 bam 2.0 GB
EGAF00000152109 bam 1.9 GB
EGAF00000152110 bam 1.9 GB
EGAF00000152111 bam 2.0 GB
EGAF00000152112 bam 1.9 GB
EGAF00000152113 bam 2.1 GB
EGAF00000152114 bam 2.1 GB
EGAF00000152115 bam 2.2 GB
EGAF00000152116 bam 2.4 GB
EGAF00000152117 bam 1.9 GB
EGAF00000152118 bam 2.3 GB
EGAF00000152119 bam 2.0 GB
EGAF00000152120 bam 2.0 GB
EGAF00000152121 bam 2.2 GB
EGAF00000152122 bam 2.0 GB
EGAF00000152123 bam 2.0 GB
EGAF00000152124 bam 1.9 GB
EGAF00000152125 bam 2.0 GB
EGAF00000152126 bam 2.0 GB
215 Files (567.2 GB)