Triple Negative Breast Cancer Whole Genome Validations
We propose to definitively characterise the somatic genetics of Triple negative breast cancer through generation of comprehensive catalogues of somatic mutations in 500 cases by high coverage genome sequencing coupled with integrated transcriptomic and methylation analyses. This study will use a bespoke bait set to pulldown regions of interest found in whole genome sequencing to validate mutations found.
- 26/05/2015
- 46 samples
- DAC: EGAC00001000010
- Technology: Illumina HiSeq 2000
http://www.icgc.org/icgc/goals-structure-policies-guidelines/e1-informed-consent-access-and-ethical-oversight
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001000426 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
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|---|---|---|---|---|
| EGAF00000231649 | bam | 2.0 GB | Report |
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| EGAF00000231650 | bam | 2.0 GB | Report |
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| EGAF00000231651 | bam | 1.8 GB | Report |
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| EGAF00000231652 | bam | 2.4 GB | Report |
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| EGAF00000231653 | bam | 1.8 GB | Report |
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| EGAF00000231654 | bam | 2.6 GB | Report |
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| EGAF00000231655 | bam | 1.7 GB | Report |
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| EGAF00000231656 | bam | 1.7 GB | Report |
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| EGAF00000231657 | bam | 1.5 GB | Report |
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| EGAF00000231658 | bam | 1.5 GB | Report |
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| EGAF00000231659 | bam | 1.6 GB | Report |
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| EGAF00000231660 | bam | 1.3 GB | Report |
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| EGAF00000231661 | bam | 1.4 GB | Report |
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| EGAF00000231662 | bam | 1.4 GB | Report |
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| EGAF00000231663 | bam | 1.5 GB | Report |
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| EGAF00000231664 | bam | 1.5 GB | Report |
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| EGAF00000231665 | bam | 1.2 GB | Report |
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| EGAF00000231666 | bam | 1.2 GB | Report |
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| EGAF00000231667 | bam | 1.3 GB | Report |
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| EGAF00000231668 | bam | 1.1 GB | Report |
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| EGAF00000231669 | bam | 1.2 GB | Report |
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| EGAF00000231670 | bam | 1.5 GB | Report |
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| EGAF00000233032 | bam | 1.3 GB | Report |
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| EGAF00000233033 | bam | 1.3 GB | Report |
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| EGAF00000233034 | bam | 1.1 GB | Report |
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| EGAF00000233035 | bam | 1.0 GB | Report |
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| EGAF00000233036 | bam | 1.1 GB | Report |
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| EGAF00000233037 | bam | 1.1 GB | Report |
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| EGAF00000233038 | bam | 1.2 GB | Report |
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| EGAF00000233039 | bam | 1.3 GB | Report |
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| EGAF00000233040 | bam | 1.8 GB | Report |
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| EGAF00000233041 | bam | 1.8 GB | Report |
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| EGAF00000233042 | bam | 1.9 GB | Report |
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| EGAF00000233043 | bam | 1.8 GB | Report |
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| EGAF00000233044 | bam | 2.1 GB | Report |
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| EGAF00000233045 | bam | 2.0 GB | Report |
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| EGAF00000233046 | bam | 1.9 GB | Report |
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| EGAF00000233047 | bam | 1.7 GB | Report |
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| EGAF00000233048 | bam | 1.6 GB | Report |
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| EGAF00000233049 | bam | 1.5 GB | Report |
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| EGAF00000233050 | bam | 1.4 GB | Report |
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| EGAF00000233051 | bam | 1.3 GB | Report |
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| EGAF00000233052 | bam | 1.3 GB | Report |
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| EGAF00000233053 | bam | 1.3 GB | Report |
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| EGAF00000233054 | bam | 1.3 GB | Report |
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| EGAF00000233055 | bam | 1.2 GB | Report |
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| EGAF00000242305 | bam | 1.3 GB | Report |
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| EGAF00000242306 | bam | 1.3 GB | Report |
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| EGAF00000242307 | bam | 1.1 GB | Report |
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| EGAF00000242308 | bam | 1.1 GB | Report |
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| EGAF00000242309 | bam | 1.1 GB | Report |
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| EGAF00000242310 | bam | 1.1 GB | Report |
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| EGAF00000242311 | bam | 1.2 GB | Report |
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| EGAF00000242312 | bam | 1.3 GB | Report |
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| EGAF00000242313 | bam | 1.9 GB | Report |
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| EGAF00000242314 | bam | 1.8 GB | Report |
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| EGAF00000242315 | bam | 1.9 GB | Report |
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| EGAF00000242316 | bam | 1.9 GB | Report |
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| EGAF00000242317 | bam | 2.1 GB | Report |
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| EGAF00000242318 | bam | 2.1 GB | Report |
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| EGAF00000242319 | bam | 2.0 GB | Report |
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| EGAF00000242320 | bam | 1.8 GB | Report |
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| EGAF00000242321 | bam | 1.6 GB | Report |
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| EGAF00000242322 | bam | 1.5 GB | Report |
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| EGAF00000242323 | bam | 1.5 GB | Report |
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| EGAF00000242324 | bam | 1.3 GB | Report |
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| EGAF00000242325 | bam | 1.3 GB | Report |
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| EGAF00000242326 | bam | 1.3 GB | Report |
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| EGAF00000242327 | bam | 1.4 GB | Report |
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| EGAF00000242328 | bam | 1.2 GB | Report |
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| EGAF00000242329 | bam | 2.2 GB | Report |
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| EGAF00000242330 | bam | 2.2 GB | Report |
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| EGAF00000242331 | bam | 2.0 GB | Report |
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| EGAF00000242332 | bam | 2.6 GB | Report |
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| EGAF00000242333 | bam | 1.9 GB | Report |
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| EGAF00000242334 | bam | 2.8 GB | Report |
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| EGAF00000242335 | bam | 1.8 GB | Report |
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| EGAF00000242336 | bam | 1.8 GB | Report |
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| EGAF00000242337 | bam | 1.6 GB | Report |
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| EGAF00000242338 | bam | 1.6 GB | Report |
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| EGAF00000242339 | bam | 1.7 GB | Report |
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| EGAF00000242340 | bam | 1.3 GB | Report |
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| EGAF00000242341 | bam | 1.5 GB | Report |
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| EGAF00000242342 | bam | 1.5 GB | Report |
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| EGAF00000242343 | bam | 1.6 GB | Report |
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| EGAF00000242344 | bam | 1.6 GB | Report |
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| EGAF00000242345 | bam | 1.3 GB | Report |
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| EGAF00000242346 | bam | 1.3 GB | Report |
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| EGAF00000242347 | bam | 1.4 GB | Report |
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| EGAF00000242348 | bam | 1.1 GB | Report |
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| EGAF00000242349 | bam | 1.3 GB | Report |
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| EGAF00000242350 | bam | 1.6 GB | Report |
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| 92 Files (144.2 GB) | ||||