About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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QDNAseq dataset

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000642 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00000505059 fastq.gz 208.8 MB Report
EGAF00000505060 fastq.gz 451.5 MB Report
EGAF00000505061 fastq.gz 244.7 MB Report
EGAF00000505062 fastq.gz 242.3 MB Report
EGAF00000505063 fastq.gz 701.6 MB Report
EGAF00000505064 fastq.gz 433.0 MB Report
EGAF00000505065 fastq.gz 489.2 MB Report
EGAF00000505066 fastq.gz 517.8 MB Report
EGAF00000505067 fastq.gz 629.5 MB Report
EGAF00000505068 fastq.gz 386.4 MB Report
EGAF00000505069 fastq.gz 507.3 MB Report
EGAF00000505070 fastq.gz 383.0 MB Report
EGAF00000505071 fastq.gz 642.9 MB Report
EGAF00000505072 fastq.gz 125.8 MB Report
EGAF00000505073 fastq.gz 214.3 MB Report
EGAF00000505074 fastq.gz 218.0 MB Report
EGAF00000505075 fastq.gz 272.9 MB Report
EGAF00000505076 fastq.gz 417.0 MB Report
EGAF00000505077 fastq.gz 484.9 MB Report
EGAF00000505078 fastq.gz 526.4 MB Report
EGAF00000505079 fastq.gz 176.4 MB Report
EGAF00000505080 fastq.gz 273.3 MB Report
EGAF00000505081 fastq.gz 558.9 MB Report
EGAF00000505082 fastq.gz 488.8 MB Report
EGAF00000505083 fastq.gz 511.0 MB Report
EGAF00000505084 fastq.gz 1.3 GB Report
EGAF00000505085 fastq.gz 274.4 MB Report
EGAF00000505086 fastq.gz 647.3 MB Report
EGAF00000505087 fastq.gz 431.9 MB Report
EGAF00000505088 fastq.gz 280.9 MB Report
EGAF00000505089 fastq.gz 344.6 MB Report
EGAF00000505090 fastq.gz 528.5 MB Report
EGAF00000505091 fastq.gz 599.2 MB Report
EGAF00000505092 fastq.gz 568.4 MB Report
EGAF00000505093 fastq.gz 304.5 MB Report
EGAF00000505094 fastq.gz 527.0 MB Report
36 Files (15.9 GB)