Browse files

Dataset

Complete DNA/RNA sequencing dataset for Australian ICGC ovarian cancer sequencing project 2014-07-07

Dataset ID Technology Samples
EGAD00001000877 N/A 331

Dataset Description

Complete WGS and RNA-Seq dataset for Australian ICGC ovarian cancer sequencing project 2014-07-07, representing 93 donors.
Sequencing was performed on Illumina HiSeq.
Alignment of the lane-level fastq data was performed with bwa (WGS data) and RSEM (transcriptome data).
For this dataset lane-level .bam files have been merged and de-duplicated to create a single bam file for each sample type (tumour/normal) for each donor.
This dataset supersedes all previous datasets for this study.

2016-08-08 updated with 14 outstanding RNA-seq samples & corresponding RSEM bams

2016-12-07 updated with 7 outstanding RNA-seq controls and corresponding RSEM bams

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

ICGC Data Access Compliance Office
Contact person: helpdesk
Email: daco [at] icgc-argo [dot] org
Access information: https://docs.icgc-argo.org/docs/data-access/daco/applying
More details: EGAC00001000010

Downloads

You don't have access to the download section.