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Dataset

ICGC Prostate Cancer Whole Genome Sequencing

Dataset ID Technology Samples
EGAD00001000892 Illumina HiSeq 2000 40

Dataset Description

Whole Genome Sequencing Illumina HiSeq data from 20 men with prostate cancer. 20 samples were taken from primary tissue obtained at prostatectomy (target sequencing depth 50X) with matched blood control (target sequencing depth 30X). These were submitted for use in the ICGC Pan-Cancer Analysis of Whole Genomes project.

Same raw data submitted in EGAD00001001116.

As of September 2020, some of the studies using these data include:
Wedge et al, Nature Genetics 2018 (PMID: 29662167)
Pan-Cancer Analysis of Whole Genomes, Nature 2020 (PMID: 32025007)

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

ICGC Data Access Compliance Office
Contact person: helpdesk
Email: daco [at] icgc-argo [dot] org
Access information: https://docs.icgc-argo.org/docs/data-access/daco/applying
More details: EGAC00001000010

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