Need Help?

Whole exome sequencing of gallbladder cancer

The dataset includes the whole exome sequencing data from32 pairs of gallbladder caner tissues and patient-matched normal tissues.

Request Access


This agreement governs the terms on which access will be granted to the genotype data generated by the XinHua Hospital NGS group (XHHNG).In signing this agreement, you are agreeing to be bound by the terms and conditions of access set out in this agreement.For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your” shall be construed accordingly.Definitions: Consortium means the XinHua Hospital NGS group (XHHNG), a group in XinHua Hospital. Primary contributors include Zhou Zhang, Maolan Li, Yun Liu and Yingbin Liu.Data means all and any human genetic data obtained from the XinHua Hospital NGS group. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organization at which the User is employed, affiliated or enrolled.Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 8. You agree to abide by the terms outlined in the Consortium 'Publications Policy' as set out in Schedule 1. 9. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Consortium and the relevant primary collectors and their funders. Suitable wording is provided in the Publications Policy given in Schedule 1. 10. You accept that the Consortium, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 11. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 12. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 13. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 14. You accept that it may be necessary for the XinHua Hospital NGS group or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the XinHua Hospital NGS group or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 15. You agree that you will submit a report to the XinHua Hospital NGS Data Access Committee, if requested, on completion of the agreed purpose. The XinHua Hospital NGS Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 16. You accept that the Data is protected by and subject to international laws and that You are responsible for ensuring compliance with any such applicable law. The XinHua Hospital NGS Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 17. This agreement shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the non-exclusive jurisdiction of the English courts. SCHEDULE 1 Publications Policy The primary purpose of the XinHua Hospital NGS Group (XHHNG) is to accelerate efforts to identify genome sequence variants influencing major causes of human morbidity and mortality, through implementation and analysis of large-scale next generation sequencing studies. Additional objectives include the development and validation of informatics and analytical solutions appropriate to the scale and nature of the project, as well as use of the data generated to answer important methodological and biological questions relevant to sequencing studies in general. The Consortium anticipates that data generated from the project will be used by others, such as required for developing new analytical methods, in understanding patterns of somatic mutations and in guiding selection of markers to map genes involved in cancers. Authors who use data from the project must acknowledge the XHHNG using the following wording "This study makes use of data generated by the XinHua Hospital NGS Group. Primary Investigators who contributed to the generation of the data include Zhou Zhang, Maolan Li, Yun Liu and Yingbin Liu. Funding for the project was provided by National Natural Science Foundation of China and National High Technology Research and Development Program (863 Program, No. 2012AA022606; 2012BAK01B00)” and cite the relevant primary XHHNG publication.Users should note that the XinHua Hospital NGS Group bears no responsibility for the further analysis or interpretation of these data, over and above that published by the Consortium.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000853 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000585317 bam 5.8 GB
EGAF00000585318 bam 3.8 GB
EGAF00000585319 bam 4.8 GB
EGAF00000585320 bam 7.0 GB
EGAF00000585321 bam 5.7 GB
EGAF00000585322 bam 5.1 GB
EGAF00000585323 bam 3.3 GB
EGAF00000585324 bam 6.7 GB
EGAF00000585325 bam 2.5 GB
EGAF00000585326 bam 5.1 GB
EGAF00000585327 bam 4.3 GB
EGAF00000585328 bam 4.9 GB
EGAF00000585329 bam 7.0 GB
EGAF00000585330 bam 7.1 GB
EGAF00000585331 bam 4.0 GB
EGAF00000585332 bam 3.9 GB
EGAF00000585333 bam 4.1 GB
EGAF00000585334 bam 3.9 GB
EGAF00000585335 bam 4.7 GB
EGAF00000585336 bam 3.7 GB
EGAF00000585337 bam 4.7 GB
EGAF00000585338 bam 2.8 GB
EGAF00000585339 bam 2.8 GB
EGAF00000585340 bam 5.5 GB
EGAF00000585341 bam 5.3 GB
EGAF00000585342 bam 5.2 GB
EGAF00000585343 bam 5.0 GB
EGAF00000585344 bam 5.2 GB
EGAF00000585345 bam 4.5 GB
EGAF00000585346 bam 5.0 GB
EGAF00000585347 bam 4.6 GB
EGAF00000585348 bam 6.3 GB
EGAF00000585349 bam 3.8 GB
EGAF00000585350 bam 4.0 GB
EGAF00000585351 bam 6.0 GB
EGAF00000585352 bam 5.5 GB
EGAF00000585353 bam 5.5 GB
EGAF00000585354 bam 5.7 GB
EGAF00000585355 bam 4.7 GB
EGAF00000585356 bam 5.1 GB
EGAF00000585357 bam 5.2 GB
EGAF00000585358 bam 5.0 GB
EGAF00000585359 bam 4.6 GB
EGAF00000585360 bam 4.7 GB
EGAF00000585361 bam 4.1 GB
EGAF00000585362 bam 4.1 GB
EGAF00000585363 bam 5.3 GB
EGAF00000585364 bam 5.3 GB
EGAF00000585365 bam 4.9 GB
EGAF00000585366 bam 4.7 GB
EGAF00000585367 bam 4.3 GB
EGAF00000585368 bam 3.9 GB
EGAF00000585369 bam 5.0 GB
EGAF00000585370 bam 4.4 GB
EGAF00000585371 bam 6.8 GB
EGAF00000585372 bam 5.0 GB
EGAF00000585373 bam 5.3 GB
EGAF00000585374 bam 5.7 GB
EGAF00000585375 bam 3.9 GB
EGAF00000585376 bam 5.5 GB
EGAF00000585377 bam 5.0 GB
EGAF00000585378 bam 5.5 GB
EGAF00000585379 bam 6.0 GB
EGAF00000585380 bam 5.2 GB
64 Files (313.8 GB)