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Targeted gene sequencing of gallbladder cancer

The dataset includes the targeted gene sequencing data from51 pairs of gallbladder caner tissues and patient-matched normal tissues.

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This agreement governs the terms on which access will be granted to the genotype data generated by the XinHua Hospital NGS group (XHHNG).In signing this agreement, you are agreeing to be bound by the terms and conditions of access set out in this agreement.For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your” shall be construed accordingly.Definitions: Consortium means the XinHua Hospital NGS group (XHHNG), a group in XinHua Hospital. Primary contributors include Zhou Zhang, Maolan Li, Yun Liu and Yingbin Liu.Data means all and any human genetic data obtained from the XinHua Hospital NGS group. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organization at which the User is employed, affiliated or enrolled.Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 8. You agree to abide by the terms outlined in the Consortium 'Publications Policy' as set out in Schedule 1. 9. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Consortium and the relevant primary collectors and their funders. Suitable wording is provided in the Publications Policy given in Schedule 1. 10. You accept that the Consortium, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 11. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 12. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 13. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 14. You accept that it may be necessary for the XinHua Hospital NGS group or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the XinHua Hospital NGS group or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 15. You agree that you will submit a report to the XinHua Hospital NGS Data Access Committee, if requested, on completion of the agreed purpose. The XinHua Hospital NGS Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 16. You accept that the Data is protected by and subject to international laws and that You are responsible for ensuring compliance with any such applicable law. The XinHua Hospital NGS Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 17. This agreement shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the non-exclusive jurisdiction of the English courts. SCHEDULE 1 Publications Policy The primary purpose of the XinHua Hospital NGS Group (XHHNG) is to accelerate efforts to identify genome sequence variants influencing major causes of human morbidity and mortality, through implementation and analysis of large-scale next generation sequencing studies. Additional objectives include the development and validation of informatics and analytical solutions appropriate to the scale and nature of the project, as well as use of the data generated to answer important methodological and biological questions relevant to sequencing studies in general. The Consortium anticipates that data generated from the project will be used by others, such as required for developing new analytical methods, in understanding patterns of somatic mutations and in guiding selection of markers to map genes involved in cancers. Authors who use data from the project must acknowledge the XHHNG using the following wording "This study makes use of data generated by the XinHua Hospital NGS Group. Primary Investigators who contributed to the generation of the data include Zhou Zhang, Maolan Li, Yun Liu and Yingbin Liu. Funding for the project was provided by National Natural Science Foundation of China and National High Technology Research and Development Program (863 Program, No. 2012AA022606; 2012BAK01B00)” and cite the relevant primary XHHNG publication.Users should note that the XinHua Hospital NGS Group bears no responsibility for the further analysis or interpretation of these data, over and above that published by the Consortium.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000853 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000585381 bam 512.2 MB
EGAF00000585382 bam 794.1 MB
EGAF00000585383 bam 769.1 MB
EGAF00000585384 bam 1.1 GB
EGAF00000585385 bam 1.1 GB
EGAF00000585386 bam 1.0 GB
EGAF00000585387 bam 602.2 MB
EGAF00000585388 bam 774.7 MB
EGAF00000585389 bam 690.7 MB
EGAF00000585390 bam 832.5 MB
EGAF00000585391 bam 727.5 MB
EGAF00000585392 bam 640.7 MB
EGAF00000585393 bam 481.3 MB
EGAF00000585394 bam 1.2 GB
EGAF00000585395 bam 935.3 MB
EGAF00000585396 bam 983.9 MB
EGAF00000585397 bam 1.0 GB
EGAF00000585398 bam 776.3 MB
EGAF00000585399 bam 789.2 MB
EGAF00000585400 bam 785.4 MB
EGAF00000585401 bam 586.7 MB
EGAF00000585402 bam 626.2 MB
EGAF00000585403 bam 1.3 GB
EGAF00000585404 bam 1.0 GB
EGAF00000585405 bam 1.1 GB
EGAF00000585406 bam 759.8 MB
EGAF00000585407 bam 701.9 MB
EGAF00000585408 bam 627.6 MB
EGAF00000585409 bam 737.3 MB
EGAF00000585410 bam 1.3 GB
EGAF00000585411 bam 863.6 MB
EGAF00000585412 bam 884.6 MB
EGAF00000585413 bam 967.9 MB
EGAF00000585414 bam 1.1 GB
EGAF00000585415 bam 1.0 GB
EGAF00000585416 bam 754.1 MB
EGAF00000585417 bam 897.6 MB
EGAF00000585418 bam 833.2 MB
EGAF00000585419 bam 1.2 GB
EGAF00000585420 bam 848.0 MB
EGAF00000585421 bam 627.2 MB
EGAF00000585422 bam 1.0 GB
EGAF00000585423 bam 960.9 MB
EGAF00000585424 bam 868.8 MB
EGAF00000585425 bam 696.4 MB
EGAF00000585426 bam 884.5 MB
EGAF00000585427 bam 754.5 MB
EGAF00000585428 bam 895.5 MB
EGAF00000585429 bam 777.1 MB
EGAF00000585430 bam 1.1 GB
EGAF00000585431 bam 861.9 MB
EGAF00000585432 bam 937.9 MB
EGAF00000585433 bam 971.6 MB
EGAF00000585434 bam 778.3 MB
EGAF00000585435 bam 765.0 MB
EGAF00000585436 bam 649.8 MB
EGAF00000585437 bam 1.2 GB
EGAF00000585438 bam 720.4 MB
EGAF00000585439 bam 590.1 MB
EGAF00000585440 bam 593.9 MB
EGAF00000585441 bam 908.2 MB
EGAF00000585442 bam 991.5 MB
EGAF00000585443 bam 673.3 MB
EGAF00000585444 bam 718.4 MB
EGAF00000585445 bam 688.1 MB
EGAF00000585446 bam 862.5 MB
EGAF00000585447 bam 820.8 MB
EGAF00000585448 bam 1.1 GB
EGAF00000585449 bam 1.0 GB
EGAF00000585450 bam 1.0 GB
EGAF00000585451 bam 949.1 MB
EGAF00000585452 bam 743.3 MB
EGAF00000585453 bam 511.1 MB
EGAF00000585454 bam 899.1 MB
EGAF00000585455 bam 653.5 MB
EGAF00000585456 bam 702.9 MB
EGAF00000585457 bam 696.3 MB
EGAF00000585458 bam 842.8 MB
EGAF00000585459 bam 740.2 MB
EGAF00000585460 bam 1.0 GB
EGAF00000585461 bam 584.8 MB
EGAF00000585462 bam 737.7 MB
EGAF00000585463 bam 884.1 MB
EGAF00000585464 bam 1.0 GB
EGAF00000585465 bam 1.0 GB
EGAF00000585466 bam 789.7 MB
EGAF00000585467 bam 1.0 GB
EGAF00000585468 bam 1.1 GB
EGAF00000585469 bam 1.2 GB
EGAF00000585470 bam 949.0 MB
EGAF00000585471 bam 1.3 GB
EGAF00000585472 bam 1.0 GB
EGAF00000585473 bam 918.3 MB
EGAF00000585474 bam 1.4 GB
EGAF00000585475 bam 937.9 MB
EGAF00000585476 bam 1.0 GB
EGAF00000585477 bam 1.2 GB
EGAF00000585478 bam 1.0 GB
EGAF00000585479 bam 1.2 GB
EGAF00000585480 bam 1.4 GB
EGAF00000585481 bam 1.5 GB
EGAF00000585482 bam 1.1 GB
102 Files (91.0 GB)