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Cancer-associated genome-wide hypomethylation and copy number aberrations

Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing

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Policy for Plasma DNA data sharing

The CUHK Circulating Nucleic Acids Research Group Data Access Agreement This agreement governs the terms and conditions on which access will be granted to users of the sequencing and genotyping data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). The terms and conditions of access set out in this agreement apply both to the User and the User’s Institution (both as defined below). User is referred to within the agreement as “You” and the term “Your” will be construed accordingly. By signing this agreement, You agree to be bound by the terms and conditions of access set out in this agreement. Definitions: Group means The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). Data means all and any human genetic data obtained by User or User’s Institution from the Group via the European Genome-phenome Archive. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. In the event that the Data Subject is legally incapable of giving an informed consent, such consent has been given by his/her legal guardian. User means a researcher whose User’s Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance by the Group. Data Access Committee means a committee assigned by the Group for reviewing and approving the data access application of the User. The committee consists of three or more investigators from the Group. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written, electronic, graphical, photographic, recorded (including oral recordings), and verbal presentations of research. User’s Institution means the organisation at which the User is employed, affiliated or enrolled. Terms and Conditions: By signing this agreement: 1. You agree to use the Data only for the advancement of medical and scientific research, according to the consent given by Data Subjects. 2. You agree not to use the Data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to transfer or disclose the Data, in whole or in part, or any information/material derived from the Data, to others, except as reasonably necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator within the same User’s Institution, the collaborator must make a separate application for access to the Data. 5. You agree to use the Data for the approved purpose and project described in your application only; use of the Data for a new purpose or project will require a new application and approval. 6. You agree to acknowledge in any work based in whole or in part on the Data, the publications from which the Data derives, the version of the Data, and the role of the Group. The wordings of the acknowledgement are “This study makes use of data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group, as reported by Chan et al in Clinical Chemistry (doi:10.1373/clinchem.2012.196014). 7. You accept that the Group, the original data creators, depositors or copyright holders, or the funders of the Group: a) make no warranties or representations with respect to the Data, including but not limited to its fitness for purpose, accuracy or comprehensiveness, the continued access to the Data without interruption; and b) accept no liability for any direct, indirect, consequential, special or incidental, damages or losses arising from or in connection with the use of the Data or this agreement. 8. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that reproduction, except as reasonably required to carry out Your research with the Data in accordance with the approved purpose referred to in paragraph 5 above, or sale of all or part of the Data in any form is not permitted. 9. You agree that nothing in this agreement shall operate to transfer to You or to the User’s Institution any intellectual property rights relating to the Data. 10. You accept that this agreement will be terminated immediately by the Group without notice upon breach of any terms of this agreement by You and You agree to destroy any Data held when required. 11. You accept that it may be necessary for the Group or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Group or its appointed agent will to inform You of any changes. You agree that Your continued use of the Data shall be deemed to represent your consent to any revised terms of the Agreement. 12. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User’s Institution. 13. You accept that the Data is protected by the privacy law in the relevant jurisdiction and that You are responsible for ensuring Your use of the Data is in compliance with any such applicable law. Notwithstanding the above, nothing in this agreement shall limit the rights of the Data Subjects under the Personal Data (Privacy) Ordinance (Cap 486) in Hong Kong. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the Personal Data (Privacy) Ordinance in Hong Kong. 14. This agreement shall be construed, interpreted and governed by the laws of Hong Kong Special Administrative Region.   For and on behalf of User: Name of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Signature of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Date: _____________________________________ For and on behalf of User’s Institution: Signature of Institutional or Administrative Authority: ______________________________________ Print name: ______________________________________ User’s Institution: ______________________________________ Date: ¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬______________________________________ WHEN SUBMITTING THIS DOCUMENT, PLEASE INCLUDE ALL PAGES OF THE AGREEMENT WITH THIS SIGNATURE PAGE

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000962 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000684018 fq.bz2 13.3 GB
EGAF00000684019 fq.bz2 12.3 GB
EGAF00000684020 fq.bz2 12.9 GB
EGAF00000684021 fq.bz2 11.9 GB
EGAF00000684022 fq.bz2 12.4 GB
EGAF00000684023 fq.bz2 11.4 GB
EGAF00000684024 fq.bz2 11.8 GB
EGAF00000684025 fq.bz2 10.7 GB
EGAF00000684026 fq.bz2 11.5 GB
EGAF00000684027 fq.bz2 10.5 GB
EGAF00000684028 fq.bz2 12.6 GB
EGAF00000684029 fq.bz2 10.2 GB
EGAF00000684030 fq.bz2 11.8 GB
EGAF00000684031 fq.bz2 9.7 GB
EGAF00000684032 fq.bz2 12.7 GB
EGAF00000684033 fq.bz2 10.2 GB
EGAF00000684034 fq.bz2 10.4 GB
EGAF00000684035 fq.bz2 8.1 GB
EGAF00000684036 fq.bz2 10.9 GB
EGAF00000684037 fq.bz2 8.4 GB
EGAF00000684038 fq.bz2 12.3 GB
EGAF00000684039 fq.bz2 11.2 GB
EGAF00000684040 fq.bz2 8.0 GB
EGAF00000684041 fq.bz2 7.1 GB
EGAF00000684042 fq.bz2 10.8 GB
EGAF00000684043 fq.bz2 9.5 GB
EGAF00000684044 fq.bz2 12.7 GB
EGAF00000684045 fq.bz2 11.6 GB
EGAF00000684046 fq.bz2 8.6 GB
EGAF00000684047 fq.bz2 7.6 GB
EGAF00000684048 fq.bz2 7.4 GB
EGAF00000684049 fq.bz2 6.6 GB
EGAF00000684050 fq.bz2 11.7 GB
EGAF00000684051 fq.bz2 10.7 GB
EGAF00000684052 fq.bz2 12.7 GB
EGAF00000684053 fq.bz2 11.7 GB
EGAF00000684054 fq.bz2 12.6 GB
EGAF00000684055 fq.bz2 11.5 GB
EGAF00000684056 fq.bz2 12.5 GB
EGAF00000684057 fq.bz2 11.5 GB
EGAF00000684058 fq.bz2 11.5 GB
EGAF00000684059 fq.bz2 10.5 GB
EGAF00000684060 fq.bz2 13.0 GB
EGAF00000684061 fq.bz2 12.2 GB
EGAF00000684062 fq.bz2 12.0 GB
EGAF00000684063 fq.bz2 11.0 GB
EGAF00000684064 fq.bz2 3.9 GB
EGAF00000684065 fq.bz2 3.2 GB
EGAF00000684066 fq.bz2 11.9 GB
EGAF00000684067 fq.bz2 11.3 GB
EGAF00000684068 fq.bz2 8.4 GB
EGAF00000684069 fq.bz2 7.5 GB
EGAF00000684070 fq.bz2 12.5 GB
EGAF00000684071 fq.bz2 10.9 GB
EGAF00000684072 fq.bz2 9.2 GB
EGAF00000684073 fq.bz2 8.2 GB
EGAF00000684074 fq.bz2 13.1 GB
EGAF00000684075 fq.bz2 11.2 GB
EGAF00000684076 fq.bz2 13.0 GB
EGAF00000684077 fq.bz2 11.0 GB
EGAF00000684078 fq.bz2 12.2 GB
EGAF00000684079 fq.bz2 9.8 GB
EGAF00000684080 fq.bz2 12.4 GB
EGAF00000684081 fq.bz2 10.3 GB
EGAF00000684082 fq.bz2 12.5 GB
EGAF00000684083 fq.bz2 10.3 GB
EGAF00000684084 fq.bz2 10.2 GB
EGAF00000684085 fq.bz2 9.2 GB
EGAF00000684086 fq.bz2 8.9 GB
EGAF00000684087 fq.bz2 8.0 GB
EGAF00000684088 fq.bz2 9.2 GB
EGAF00000684089 fq.bz2 8.2 GB
EGAF00000684090 fq.bz2 10.2 GB
EGAF00000684091 fq.bz2 7.9 GB
EGAF00000684092 fq.bz2 9.1 GB
EGAF00000684093 fq.bz2 8.6 GB
EGAF00000684094 fq.bz2 11.4 GB
EGAF00000684095 fq.bz2 8.9 GB
EGAF00000684096 fq.bz2 8.6 GB
EGAF00000684097 fq.bz2 7.7 GB
EGAF00000684098 fq.bz2 10.1 GB
EGAF00000684099 fq.bz2 9.5 GB
EGAF00000684100 fq.bz2 7.1 GB
EGAF00000684101 fq.bz2 6.4 GB
EGAF00000692055 fq.bz2 3.7 GB
EGAF00000692056 fq.bz2 3.4 GB
EGAF00000692057 fq.bz2 2.5 GB
EGAF00000692058 fq.bz2 2.3 GB
EGAF00000692059 fq.bz2 3.9 GB
EGAF00000692060 fq.bz2 3.8 GB
EGAF00000692061 fq.bz2 2.9 GB
EGAF00000692062 fq.bz2 2.6 GB
EGAF00000692063 fq.bz2 7.5 GB
EGAF00000692064 fq.bz2 7.2 GB
EGAF00000692065 fq.bz2 5.4 GB
EGAF00000692066 fq.bz2 5.5 GB
EGAF00000692067 fq.bz2 5.3 GB
EGAF00000692068 fq.bz2 5.5 GB
EGAF00000692069 fq.bz2 5.4 GB
EGAF00000692070 fq.bz2 5.5 GB
EGAF00000692071 fq.bz2 5.2 GB
EGAF00000692072 fq.bz2 5.3 GB
EGAF00000692073 fq.bz2 10.4 GB
EGAF00000692074 fq.bz2 9.0 GB
EGAF00000692075 fq.bz2 13.3 GB
EGAF00000692076 fq.bz2 13.3 GB
EGAF00000692077 fq.bz2 5.8 GB
EGAF00000692078 fq.bz2 6.0 GB
EGAF00000692079 fq.bz2 5.4 GB
EGAF00000692080 fq.bz2 5.5 GB
EGAF00000692081 fq.bz2 8.5 GB
EGAF00000692082 fq.bz2 8.6 GB
EGAF00000692083 fq.bz2 8.6 GB
EGAF00000692084 fq.bz2 8.6 GB
EGAF00000692085 fq.bz2 1.5 GB
EGAF00000692086 fq.bz2 1.6 GB
EGAF00000692087 fq.bz2 8.6 GB
EGAF00000692088 fq.bz2 8.7 GB
EGAF00000692089 fq.bz2 3.5 GB
EGAF00000692090 fq.bz2 2.7 GB
EGAF00000692091 fq.bz2 5.2 GB
EGAF00000692092 fq.bz2 5.3 GB
EGAF00000692093 fq.bz2 4.8 GB
EGAF00000692094 fq.bz2 4.9 GB
EGAF00000692095 fq.bz2 8.3 GB
EGAF00000692096 fq.bz2 8.5 GB
EGAF00000692097 fq.bz2 5.7 GB
EGAF00000692098 fq.bz2 5.8 GB
EGAF00000692099 fq.bz2 5.9 GB
EGAF00000692100 fq.bz2 6.1 GB
EGAF00000692101 fq.bz2 3.6 GB
EGAF00000692102 fq.bz2 2.7 GB
EGAF00000692103 fq.bz2 5.4 GB
EGAF00000692104 fq.bz2 5.5 GB
EGAF00000692105 fq.bz2 7.8 GB
EGAF00000692106 fq.bz2 7.9 GB
EGAF00000692107 fq.bz2 5.0 GB
EGAF00000692108 fq.bz2 5.1 GB
EGAF00000692109 fq.bz2 8.7 GB
EGAF00000692110 fq.bz2 8.7 GB
EGAF00000692111 fq.bz2 5.5 GB
EGAF00000692112 fq.bz2 5.6 GB
EGAF00000692113 fq.bz2 3.4 GB
EGAF00000692114 fq.bz2 2.5 GB
EGAF00000692115 fq.bz2 7.7 GB
EGAF00000692116 fq.bz2 7.8 GB
EGAF00000692117 fq.bz2 10.1 GB
EGAF00000692118 fq.bz2 9.5 GB
EGAF00000692119 fq.bz2 10.5 GB
EGAF00000692120 fq.bz2 10.0 GB
EGAF00000692121 fq.bz2 9.9 GB
EGAF00000692122 fq.bz2 9.1 GB
EGAF00000692123 fq.bz2 10.8 GB
EGAF00000692124 fq.bz2 9.4 GB
EGAF00000692125 fq.bz2 9.2 GB
EGAF00000692126 fq.bz2 7.9 GB
EGAF00000692127 fq.bz2 10.1 GB
EGAF00000692128 fq.bz2 8.6 GB
EGAF00000692129 fq.bz2 13.2 GB
EGAF00000692130 fq.bz2 13.1 GB
EGAF00000692131 fq.bz2 9.1 GB
EGAF00000692132 fq.bz2 8.9 GB
EGAF00000692133 fq.bz2 12.4 GB
EGAF00000692134 fq.bz2 12.2 GB
EGAF00000692135 fq.bz2 6.6 GB
EGAF00000692136 fq.bz2 6.6 GB
EGAF00000692137 fq.bz2 5.0 GB
EGAF00000692138 fq.bz2 4.9 GB
EGAF00000692139 fq.bz2 7.2 GB
EGAF00000692140 fq.bz2 7.1 GB
170 Files (1.5 TB)