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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Low coverage WGS from plasma DNA

Low coverage whole genome sequencing plasma DNA from 50 male, 54 female non-cancer donors. For the analysis of nucleosomal positioning all data from the non-cancer controls were merged. Furthermore, two patients with metastasized breast cancer were sequenced on a NextSeq with higher depth.

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DUO:0000007
version: 2019-01-07

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0008315

CTC - Plasma-DNA - MONDO:0008315

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to datasets specific for MONDO:0008315 which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Ellen Heitzer. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by Ellen Heitzer Ellen Heitzer is a Postdoctoral Fellow and is authorized to approve researchers to have encrypted access to the data submitted to the EGA. Please be advised that Ellen Heitzer (ellen.heitzer@medunigraz.at) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations. Sincerely, Michael R. Speicher Principle Investigator

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001001754 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00001211432 fastq.gz 414.0 MB Report
EGAF00001211433 fastq.gz 389.4 MB Report
EGAF00001211434 fastq.gz 436.8 MB Report
EGAF00001211435 fastq.gz 553.7 MB Report
EGAF00001211436 fastq.gz 518.1 MB Report
EGAF00001211437 fastq.gz 448.4 MB Report
EGAF00001211438 fastq.gz 344.6 MB Report
EGAF00001211439 fastq.gz 366.2 MB Report
EGAF00001211440 fastq.gz 434.8 MB Report
EGAF00001211441 fastq.gz 2.0 GB Report
EGAF00001211442 fastq.gz 1.9 GB Report
EGAF00001211443 fastq.gz 312.1 MB Report
EGAF00001211444 fastq.gz 2.3 GB Report
EGAF00001211445 fastq.gz 1.4 GB Report
EGAF00001211446 fastq.gz 1.3 GB Report
EGAF00001211447 fastq.gz 1.4 GB Report
EGAF00001211448 fastq.gz 1.7 GB Report
EGAF00001211449 fastq.gz 597.1 MB Report
EGAF00001211450 fastq.gz 629.5 MB Report
EGAF00001211451 fastq.gz 470.3 MB Report
EGAF00001211452 fastq.gz 483.1 MB Report
EGAF00001211453 fastq.gz 1.8 GB Report
EGAF00001211454 fastq.gz 497.0 MB Report
EGAF00001211455 fastq.gz 1.7 GB Report
EGAF00001211456 fastq.gz 1.8 GB Report
EGAF00001211457 fastq.gz 392.1 MB Report
EGAF00001211458 fastq.gz 408.9 MB Report
EGAF00001211459 fastq.gz 358.9 MB Report
EGAF00001211460 fastq.gz 385.2 MB Report
EGAF00001211461 fastq.gz 354.0 MB Report
EGAF00001211462 fastq.gz 361.7 MB Report
EGAF00001211463 fastq.gz 601.9 MB Report
EGAF00001211464 fastq.gz 770.6 MB Report
EGAF00001211465 fastq.gz 921.4 MB Report
EGAF00001211466 fastq.gz 1.7 GB Report
EGAF00001211467 fastq.gz 1.7 GB Report
EGAF00001211468 fastq.gz 1.9 GB Report
EGAF00001211469 fastq.gz 1.9 GB Report
EGAF00001211470 fastq.gz 1.8 GB Report
EGAF00001211471 fastq.gz 338.1 MB Report
EGAF00001211472 fastq.gz 1.5 GB Report
EGAF00001211473 fastq.gz 1.7 GB Report
EGAF00001211474 fastq.gz 1.8 GB Report
EGAF00001211475 fastq.gz 1.8 GB Report
EGAF00001211476 fastq.gz 2.0 GB Report
EGAF00001211477 fastq.gz 1.5 GB Report
EGAF00001211478 fastq.gz 1.5 GB Report
EGAF00001211479 fastq.gz 1.6 GB Report
EGAF00001211480 fastq.gz 1.9 GB Report
EGAF00001211481 fastq.gz 2.0 GB Report
EGAF00001211482 fastq.gz 438.2 MB Report
EGAF00001211483 fastq.gz 463.1 MB Report
EGAF00001211484 fastq.gz 773.6 MB Report
EGAF00001211485 fastq.gz 427.3 MB Report
EGAF00001211486 fastq.gz 292.7 MB Report
EGAF00001211487 fastq.gz 456.2 MB Report
EGAF00001211488 fastq.gz 465.4 MB Report
EGAF00001211489 fastq.gz 397.4 MB Report
EGAF00001211490 fastq.gz 429.5 MB Report
EGAF00001211491 fastq.gz 711.4 MB Report
EGAF00001211492 fastq.gz 363.0 MB Report
EGAF00001211493 fastq.gz 557.0 MB Report
EGAF00001211494 fastq.gz 654.4 MB Report
EGAF00001211495 fastq.gz 1.8 GB Report
EGAF00001211496 fastq.gz 1.8 GB Report
EGAF00001211497 fastq.gz 2.1 GB Report
EGAF00001211498 fastq.gz 1.6 GB Report
EGAF00001211499 fastq.gz 1.8 GB Report
EGAF00001211500 fastq.gz 551.6 MB Report
EGAF00001211501 fastq.gz 1.7 GB Report
EGAF00001211502 fastq.gz 1.6 GB Report
EGAF00001211503 fastq.gz 1.6 GB Report
EGAF00001211504 fastq.gz 1.7 GB Report
EGAF00001211505 fastq.gz 392.4 MB Report
EGAF00001211506 fastq.gz 1.8 GB Report
EGAF00001211507 fastq.gz 2.0 GB Report
EGAF00001211508 fastq.gz 2.1 GB Report
EGAF00001211509 fastq.gz 1.7 GB Report
EGAF00001211510 fastq.gz 422.5 MB Report
EGAF00001211511 fastq.gz 405.1 MB Report
EGAF00001211512 fastq.gz 498.5 MB Report
EGAF00001211513 fastq.gz 488.3 MB Report
EGAF00001211514 fastq.gz 442.8 MB Report
EGAF00001211515 fastq.gz 783.9 MB Report
EGAF00001211516 fastq.gz 2.0 GB Report
EGAF00001211517 fastq.gz 1.6 GB Report
EGAF00001211518 fastq.gz 2.3 GB Report
EGAF00001211519 fastq.gz 2.8 GB Report
EGAF00001211520 fastq.gz 1.7 GB Report
EGAF00001211521 fastq.gz 560.0 MB Report
EGAF00001211522 fastq.gz 500.4 MB Report
EGAF00001211523 fastq.gz 1.5 GB Report
EGAF00001211524 fastq.gz 2.1 GB Report
EGAF00001211525 fastq.gz 1.8 GB Report
EGAF00001211526 fastq.gz 2.3 GB Report
EGAF00001211527 fastq.gz 563.2 MB Report
EGAF00001211528 fastq.gz 511.2 MB Report
EGAF00001211529 fastq.gz 2.6 GB Report
EGAF00001211530 fastq.gz 642.3 MB Report
EGAF00001211531 fastq.gz 1.7 GB Report
EGAF00001211532 fastq.gz 1.6 GB Report
EGAF00001211533 fastq.gz 659.8 MB Report
EGAF00001211534 fastq.gz 432.4 MB Report
EGAF00001211535 fastq.gz 541.0 MB Report
EGAF00001211536 fastq.gz 27.5 GB Report
EGAF00001211537 fastq.gz 31.7 GB Report
EGAF00001211538 fastq.gz 475.9 MB Report
EGAF00001211539 fastq.gz 360.8 MB Report
108 Files (177.3 GB)