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mapped Bam files from whole transcriptome RNA-seq

In this study we characterized genomic alterations in two to five metachronous bladder tumors from 29 patients initially diagnosed with early stage disease. Fourteen patients (32 tumors) had non progressive disease (NPD) and 15 patients (34 tumors) had progressive disease (PD). Whole exome sequencing (WES, ~50x mean read depth and whole transcriptome RNA-seq was performed (RNA was not advalible for 4 tumors). Data provided here consist of 71 mapped Bam files form whole transcriptome RNA-seq.

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MOMA DAC Access Policy

This document specifies the policy for granting access to the European Genome-phenome Archive (EGA) secure Web based tools for managing data access permissions to the data stored in the EGA database. Access is granted to those Data Access Committee members named in this document by Paul Flicek, head of Genes, Genomes and Variation.Conditions of access:The account holder will abide by all current and future policies of the EBI for computer use as well as computer use policies of the European Molecular Biology Laboratory (EMBL), of which the EBI is a part. All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access:The EBI will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA help-desk provides training when needed.Review:All individuals will access to the EGA user authorization tools will be reviewed annually by Paul Flicek. Any staff changes affecting the authorized person must be provided immediately to Paul Flicek ( Data Access Committee user:Henrik Hornshøj ( and Søren Vang ( of Molecular Medicine (MOMA), Aarhus University Hospital, Brendstrupgårdsvej 100, 8200 Aarhus N, Denmark

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001001686 Other
ID File Type Size Located in
EGAF00001224160 bam 4.4 GB
EGAF00001224161 bam 4.7 GB
EGAF00001224162 bam 5.3 GB
EGAF00001224163 bam 3.8 GB
EGAF00001224164 bam 13.5 GB
EGAF00001224165 bam 6.4 GB
EGAF00001224166 bam 10.0 GB
EGAF00001224167 bam 6.7 GB
EGAF00001224168 bam 8.6 GB
EGAF00001224169 bam 7.3 GB
EGAF00001224170 bam 10.7 GB
EGAF00001224171 bam 12.1 GB
EGAF00001224172 bam 6.7 GB
EGAF00001224173 bam 9.1 GB
EGAF00001224174 bam 7.9 GB
EGAF00001224175 bam 9.8 GB
EGAF00001224176 bam 8.5 GB
EGAF00001224177 bam 14.7 GB
EGAF00001224178 bam 10.3 GB
EGAF00001224179 bam 4.1 GB
EGAF00001224180 bam 7.6 GB
EGAF00001224181 bam 6.2 GB
EGAF00001224182 bam 5.1 GB
EGAF00001224183 bam 5.7 GB
EGAF00001224184 bam 4.7 GB
EGAF00001224185 bam 3.6 GB
EGAF00001224186 bam 9.5 GB
EGAF00001224187 bam 9.1 GB
EGAF00001224188 bam 11.6 GB
EGAF00001224189 bam 5.4 GB
EGAF00001224190 bam 10.5 GB
EGAF00001224191 bam 1.4 GB
EGAF00001224192 bam 10.8 GB
EGAF00001224193 bam 4.6 GB
EGAF00001224194 bam 10.1 GB
EGAF00001224195 bam 10.6 GB
EGAF00001224196 bam 10.5 GB
EGAF00001224197 bam 6.5 GB
EGAF00001224198 bam 2.4 GB
EGAF00001224199 bam 6.6 GB
EGAF00001224200 bam 10.9 GB
EGAF00001224201 bam 7.5 GB
EGAF00001224202 bam 5.7 GB
EGAF00001224203 bam 17.8 GB
EGAF00001224204 bam 17.3 GB
EGAF00001224205 bam 19.9 GB
EGAF00001224206 bam 12.3 GB
EGAF00001224207 bam 9.7 GB
EGAF00001224208 bam 12.3 GB
EGAF00001224209 bam 1.8 GB
EGAF00001224210 bam 9.9 GB
EGAF00001224211 bam 6.8 GB
EGAF00001224212 bam 5.7 GB
EGAF00001224213 bam 10.2 GB
EGAF00001224214 bam 11.6 GB
EGAF00001224215 bam 10.4 GB
EGAF00001224216 bam 7.9 GB
EGAF00001224217 bam 13.5 GB
EGAF00001224218 bam 7.7 GB
EGAF00001224219 bam 5.3 GB
EGAF00001224220 bam 16.3 GB
EGAF00001224221 bam 11.1 GB
EGAF00001224222 bam 540.3 MB
EGAF00001224223 bam 8.6 GB
EGAF00001224224 bam 9.2 GB
EGAF00001224225 bam 5.4 GB
EGAF00001224226 bam 15.0 GB
EGAF00001224227 bam 10.8 GB
EGAF00001224228 bam 8.5 GB
EGAF00001224229 bam 8.0 GB
EGAF00001224230 bam 10.1 GB
71 Files (615.0 GB)