About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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WGBS data (CancerLocator study) of cell-free DNA derived from human blood

The blood samples of eight lung cancer patients and one benign lung tumor patient are collected for this dataset. Blood samples were centrifuged first at 1,600 × g for 10 minutes, and then the plasma was transferred into new micro tubes and centrifuged at 16,000 × g for another 10 minutes. The plasma was collected and stored at -80⁰C. CfDNA was extracted from 5 ml plasma using the Qiagen QIAamp Circulating Nucleic Acids Kit and quantified by Qubit 3.0 Fluoromter (Thermo Fisher Scientific). Bisulfite conversion of cfDNA was performed by using EZ-DNA-Methylation-GOLD kit (Zymo Research). After that, Accel-NGS Methy-Seq DNA library kit (Swift Bioscience) was used to prepare the sequencing libraries. The DNA libraries were then sequenced with 150bp paired-end reads.

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The data usage policy (CancerLocator study) for WGBS data of cell-free DNA derived from human blood

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002211 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00001560870 fastq.gz 23.9 GB Report
EGAF00001560871 fastq.gz 29.7 GB Report
EGAF00001560872 fastq.gz 24.3 GB Report
EGAF00001560873 fastq.gz 29.5 GB Report
EGAF00001560874 fastq.gz 25.4 GB Report
EGAF00001560875 fastq.gz 31.1 GB Report
EGAF00001560876 fastq.gz 23.3 GB Report
EGAF00001560877 fastq.gz 27.0 GB Report
EGAF00001560878 fastq.gz 22.9 GB Report
EGAF00001560879 fastq.gz 27.3 GB Report
EGAF00001560880 fastq.gz 22.7 GB Report
EGAF00001560881 fastq.gz 27.0 GB Report
EGAF00001560882 fastq.gz 23.4 GB Report
EGAF00001560883 fastq.gz 27.6 GB Report
EGAF00001560884 fastq.gz 25.5 GB Report
EGAF00001560885 fastq.gz 31.9 GB Report
EGAF00001560886 fastq.gz 23.4 GB Report
EGAF00001560887 fastq.gz 28.3 GB Report
18 Files (474.2 GB)