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Knee OA Functional Genomics RNAseq (2017-06-09)

From 17 patients undergoing knee joint replacement surgery for osteoarthritis, we collected 4 samples each: intact cartilage, degraded cartilage, synovium, and meniscus. We also collected blood for DNA analysis. Multiplexed libraries were sequenced on Illumina HiSeq 2000 (75bp paired-end read length) and a cram file was produced for each sample. This dataset contains all the data available for this study on 2017-06-09.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001001899 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001663804 cram 2.7 GB
EGAF00001663805 cram 2.5 GB
EGAF00001663806 cram 2.8 GB
EGAF00001663807 cram 2.6 GB
EGAF00001663808 cram 2.5 GB
EGAF00001663809 cram 2.6 GB
EGAF00001663810 cram 2.1 GB
EGAF00001663811 cram 2.7 GB
EGAF00001663812 cram 2.6 GB
EGAF00001663813 cram 2.6 GB
EGAF00001663814 cram 2.6 GB
EGAF00001663815 cram 2.5 GB
EGAF00001663816 cram 2.6 GB
EGAF00001663817 cram 2.9 GB
EGAF00001663818 cram 2.5 GB
EGAF00001663819 cram 2.5 GB
EGAF00001663820 cram 2.4 GB
EGAF00001663821 cram 2.4 GB
EGAF00001663822 cram 2.3 GB
EGAF00001663823 cram 2.4 GB
EGAF00001663824 cram 2.5 GB
EGAF00001663825 cram 2.6 GB
EGAF00001663826 cram 2.6 GB
EGAF00001663827 cram 2.7 GB
EGAF00001663828 cram 2.6 GB
EGAF00001663829 cram 2.4 GB
EGAF00001663830 cram 2.6 GB
EGAF00001663831 cram 2.4 GB
EGAF00001663832 cram 2.4 GB
EGAF00001663833 cram 2.4 GB
EGAF00001663834 cram 2.4 GB
EGAF00001663835 cram 2.3 GB
EGAF00001663836 cram 2.4 GB
EGAF00001663837 cram 2.3 GB
EGAF00001663838 cram 2.4 GB
EGAF00001663839 cram 2.2 GB
EGAF00001663840 cram 1.5 GB
EGAF00001663841 cram 2.4 GB
EGAF00001663842 cram 2.3 GB
EGAF00001663843 cram 2.3 GB
EGAF00001663844 cram 2.7 GB
EGAF00001663845 cram 2.5 GB
EGAF00001663846 cram 2.6 GB
EGAF00001663847 cram 2.6 GB
EGAF00001663848 cram 2.8 GB
EGAF00001663849 cram 2.8 GB
EGAF00001663850 cram 2.9 GB
EGAF00001663851 cram 2.8 GB
EGAF00001663852 cram 2.8 GB
EGAF00001663853 cram 2.7 GB
EGAF00001663854 cram 2.9 GB
EGAF00001663855 cram 2.5 GB
EGAF00001663856 cram 2.9 GB
EGAF00001663857 cram 2.8 GB
EGAF00001663858 cram 2.7 GB
EGAF00001663859 cram 2.7 GB
EGAF00001663860 cram 2.6 GB
EGAF00001663861 cram 2.8 GB
EGAF00001663862 cram 2.6 GB
EGAF00001663863 cram 2.6 GB
EGAF00001663864 cram 2.4 GB
EGAF00001663865 cram 2.4 GB
EGAF00001663866 cram 2.8 GB
EGAF00001663867 cram 2.9 GB
EGAF00001663868 cram 2.7 GB
EGAF00001663869 cram 3.1 GB
EGAF00001663870 cram 3.0 GB
EGAF00001663871 cram 3.0 GB
EGAF00001663872 cram 1.9 GB
EGAF00001663873 cram 1.9 GB
EGAF00001663874 cram 1.9 GB
EGAF00001663875 cram 1.1 GB
EGAF00001663876 cram 1.9 GB
73 Files (184.1 GB)