Knee OA Functional Genomics RNAseq (2017-06-09)
From 17 patients undergoing knee joint replacement surgery for osteoarthritis, we collected 4 samples each: intact cartilage, degraded cartilage, synovium, and meniscus. We also collected blood for DNA analysis. Multiplexed libraries were sequenced on Illumina HiSeq 2000 (75bp paired-end read length) and a cram file was produced for each sample. This dataset contains all the data available for this study on 2017-06-09.
- 11/06/2017
- 72 samples
- DAC: EGAC00001000205
- Technology: Illumina HiSeq 2500
Wellcome Trust Sanger Institute Data Sharing Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001001899 | Transcriptome Analysis |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00001663804 | cram | 2.7 GB | Report |
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| EGAF00001663805 | cram | 2.5 GB | Report |
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| EGAF00001663806 | cram | 2.8 GB | Report |
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| EGAF00001663807 | cram | 2.6 GB | Report |
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| EGAF00001663808 | cram | 2.5 GB | Report |
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| EGAF00001663809 | cram | 2.6 GB | Report |
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| EGAF00001663810 | cram | 2.1 GB | Report |
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| EGAF00001663811 | cram | 2.7 GB | Report |
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| EGAF00001663812 | cram | 2.6 GB | Report |
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| EGAF00001663813 | cram | 2.6 GB | Report |
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| EGAF00001663814 | cram | 2.6 GB | Report |
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| EGAF00001663815 | cram | 2.5 GB | Report |
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| EGAF00001663816 | cram | 2.6 GB | Report |
|
| EGAF00001663817 | cram | 2.9 GB | Report |
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| EGAF00001663818 | cram | 2.5 GB | Report |
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| EGAF00001663819 | cram | 2.5 GB | Report |
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| EGAF00001663820 | cram | 2.4 GB | Report |
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| EGAF00001663821 | cram | 2.4 GB | Report |
|
| EGAF00001663822 | cram | 2.3 GB | Report |
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| EGAF00001663823 | cram | 2.4 GB | Report |
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| EGAF00001663824 | cram | 2.5 GB | Report |
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| EGAF00001663825 | cram | 2.6 GB | Report |
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| EGAF00001663826 | cram | 2.6 GB | Report |
|
| EGAF00001663827 | cram | 2.7 GB | Report |
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| EGAF00001663828 | cram | 2.6 GB | Report |
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| EGAF00001663829 | cram | 2.4 GB | Report |
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| EGAF00001663830 | cram | 2.6 GB | Report |
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| EGAF00001663831 | cram | 2.4 GB | Report |
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| EGAF00001663832 | cram | 2.4 GB | Report |
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| EGAF00001663833 | cram | 2.4 GB | Report |
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| EGAF00001663834 | cram | 2.4 GB | Report |
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| EGAF00001663835 | cram | 2.3 GB | Report |
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| EGAF00001663836 | cram | 2.4 GB | Report |
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| EGAF00001663837 | cram | 2.3 GB | Report |
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| EGAF00001663838 | cram | 2.4 GB | Report |
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| EGAF00001663839 | cram | 2.2 GB | Report |
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| EGAF00001663840 | cram | 1.5 GB | Report |
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| EGAF00001663841 | cram | 2.4 GB | Report |
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| EGAF00001663842 | cram | 2.3 GB | Report |
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| EGAF00001663843 | cram | 2.3 GB | Report |
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| EGAF00001663844 | cram | 2.7 GB | Report |
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| EGAF00001663845 | cram | 2.5 GB | Report |
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| EGAF00001663846 | cram | 2.6 GB | Report |
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| EGAF00001663847 | cram | 2.6 GB | Report |
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| EGAF00001663848 | cram | 2.8 GB | Report |
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| EGAF00001663849 | cram | 2.8 GB | Report |
|
| EGAF00001663850 | cram | 2.9 GB | Report |
|
| EGAF00001663851 | cram | 2.8 GB | Report |
|
| EGAF00001663852 | cram | 2.8 GB | Report |
|
| EGAF00001663853 | cram | 2.7 GB | Report |
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| EGAF00001663854 | cram | 2.9 GB | Report |
|
| EGAF00001663855 | cram | 2.5 GB | Report |
|
| EGAF00001663856 | cram | 2.9 GB | Report |
|
| EGAF00001663857 | cram | 2.8 GB | Report |
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| EGAF00001663858 | cram | 2.7 GB | Report |
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| EGAF00001663859 | cram | 2.7 GB | Report |
|
| EGAF00001663860 | cram | 2.6 GB | Report |
|
| EGAF00001663861 | cram | 2.8 GB | Report |
|
| EGAF00001663862 | cram | 2.6 GB | Report |
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| EGAF00001663863 | cram | 2.6 GB | Report |
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| EGAF00001663864 | cram | 2.4 GB | Report |
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| EGAF00001663865 | cram | 2.4 GB | Report |
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| EGAF00001663866 | cram | 2.8 GB | Report |
|
| EGAF00001663867 | cram | 2.9 GB | Report |
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| EGAF00001663868 | cram | 2.7 GB | Report |
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| EGAF00001663869 | cram | 3.1 GB | Report |
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| EGAF00001663870 | cram | 3.0 GB | Report |
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| EGAF00001663871 | cram | 3.0 GB | Report |
|
| EGAF00001663872 | cram | 1.9 GB | Report |
|
| EGAF00001663873 | cram | 1.9 GB | Report |
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| EGAF00001663874 | cram | 1.9 GB | Report |
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| EGAF00001663875 | cram | 1.1 GB | Report |
|
| EGAF00001663876 | cram | 1.9 GB | Report |
|
| 73 Files (184.1 GB) | ||||