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Recalibrated whole-exome sequencing alignment files of Saudi papillary thyroid cancer

The dataset consists of samples from papillary thyroid cancer patients. A total of 181 DNA samples from blood/normal and cancer tissue are subjected to whole exome sequencing using Illumina. The fastq files generated were aligned with reference genome ‘hg19’, duplicates were marked, realignment around indels and quality recalibration were performed to produce good quality variants. The recalibrated “.bam” files are included with this dataset.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001001788 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001663954 bam 19.7 GB
EGAF00001665012 bam 16.7 GB
EGAF00001665013 bam 11.1 GB
EGAF00001665014 bam 25.9 GB
EGAF00001665015 bam 24.0 GB
EGAF00001665016 bam 26.7 GB
EGAF00001665017 bam 22.9 GB
EGAF00001665018 bam 20.4 GB
EGAF00001665019 bam 23.3 GB
EGAF00001665020 bam 23.8 GB
EGAF00001665021 bam 21.6 GB
EGAF00001665022 bam 20.5 GB
EGAF00001665023 bam 20.9 GB
EGAF00001665024 bam 22.6 GB
EGAF00001665025 bam 20.3 GB
EGAF00001665026 bam 17.4 GB
EGAF00001665027 bam 16.5 GB
EGAF00001665028 bam 7.9 GB
EGAF00001665029 bam 15.1 GB
EGAF00001665030 bam 8.4 GB
EGAF00001665032 bam 21.6 GB
EGAF00001665033 bam 18.0 GB
EGAF00001665034 bam 20.6 GB
EGAF00001665035 bam 15.8 GB
EGAF00001665036 bam 19.8 GB
EGAF00001665037 bam 20.5 GB
EGAF00001665039 bam 26.1 GB
EGAF00001665040 bam 21.2 GB
EGAF00001665041 bam 19.4 GB
EGAF00001665042 bam 20.1 GB
EGAF00001665043 bam 21.7 GB
EGAF00001665044 bam 26.9 GB
EGAF00001665045 bam 22.2 GB
EGAF00001665046 bam 10.6 GB
EGAF00001665047 bam 15.9 GB
EGAF00001665048 bam 17.2 GB
EGAF00001665049 bam 19.1 GB
EGAF00001665050 bam 19.3 GB
EGAF00001665051 bam 20.7 GB
EGAF00001665052 bam 20.5 GB
EGAF00001665053 bam 23.3 GB
EGAF00001665054 bam 23.9 GB
EGAF00001665055 bam 17.4 GB
EGAF00001665056 bam 10.4 GB
EGAF00001665057 bam 24.3 GB
EGAF00001665058 bam 12.3 GB
EGAF00001665059 bam 20.7 GB
EGAF00001665060 bam 15.4 GB
EGAF00001665061 bam 21.5 GB
EGAF00001665062 bam 10.5 GB
EGAF00001665063 bam 18.1 GB
EGAF00001665064 bam 15.1 GB
EGAF00001665065 bam 17.4 GB
EGAF00001665066 bam 16.2 GB
EGAF00001665067 bam 10.8 GB
EGAF00001665068 bam 16.4 GB
EGAF00001665069 bam 15.1 GB
EGAF00001665070 bam 11.9 GB
EGAF00001665071 bam 19.3 GB
EGAF00001665072 bam 10.1 GB
EGAF00001665073 bam 16.9 GB
EGAF00001665074 bam 16.5 GB
EGAF00001665075 bam 21.2 GB
EGAF00001665076 bam 16.9 GB
EGAF00001665077 bam 18.4 GB
EGAF00001665078 bam 18.7 GB
EGAF00001665079 bam 25.5 GB
EGAF00001665080 bam 17.2 GB
EGAF00001665081 bam 8.2 GB
EGAF00001665082 bam 12.7 GB
EGAF00001665083 bam 18.2 GB
EGAF00001665084 bam 11.1 GB
EGAF00001665085 bam 15.4 GB
EGAF00001665086 bam 16.3 GB
EGAF00001665087 bam 12.5 GB
EGAF00001665088 bam 16.4 GB
EGAF00001665089 bam 27.8 GB
EGAF00001665090 bam 21.0 GB
EGAF00001665091 bam 28.9 GB
EGAF00001665092 bam 22.4 GB
EGAF00001665093 bam 25.5 GB
EGAF00001665094 bam 18.3 GB
EGAF00001665095 bam 11.7 GB
EGAF00001665096 bam 11.5 GB
EGAF00001665097 bam 21.6 GB
EGAF00001665098 bam 19.5 GB
EGAF00001665099 bam 10.4 GB
EGAF00001665100 bam 19.9 GB
EGAF00001665101 bam 13.1 GB
EGAF00001665102 bam 10.8 GB
EGAF00001665104 bam 10.5 GB
EGAF00001665105 bam 18.9 GB
EGAF00001665106 bam 10.6 GB
EGAF00001665107 bam 16.8 GB
EGAF00001665108 bam 22.4 GB
EGAF00001665109 bam 16.3 GB
EGAF00001665110 bam 16.0 GB
EGAF00001665111 bam 13.5 GB
EGAF00001665112 bam 22.3 GB
EGAF00001665113 bam 9.4 GB
EGAF00001665114 bam 8.4 GB
EGAF00001665115 bam 15.4 GB
EGAF00001665116 bam 11.6 GB
EGAF00001665117 bam 14.6 GB
EGAF00001665118 bam 10.3 GB
EGAF00001665119 bam 17.8 GB
EGAF00001665121 bam 16.1 GB
EGAF00001665122 bam 22.6 GB
EGAF00001665123 bam 21.1 GB
EGAF00001665124 bam 17.4 GB
EGAF00001665126 bam 18.4 GB
EGAF00001665127 bam 15.4 GB
EGAF00001665129 bam 12.3 GB
EGAF00001665130 bam 15.5 GB
EGAF00001665131 bam 18.5 GB
EGAF00001665132 bam 11.3 GB
EGAF00001665133 bam 10.8 GB
EGAF00001665134 bam 24.4 GB
EGAF00001665135 bam 15.7 GB
EGAF00001665136 bam 10.4 GB
EGAF00001665137 bam 17.1 GB
EGAF00001665138 bam 21.6 GB
EGAF00001665139 bam 10.6 GB
EGAF00001665140 bam 10.6 GB
EGAF00001665141 bam 14.4 GB
EGAF00001665142 bam 14.2 GB
EGAF00001665143 bam 15.6 GB
EGAF00001665144 bam 11.6 GB
EGAF00001665145 bam 13.5 GB
EGAF00001665146 bam 22.2 GB
EGAF00001665147 bam 17.8 GB
EGAF00001665148 bam 15.9 GB
EGAF00001665149 bam 14.1 GB
EGAF00001665150 bam 15.3 GB
EGAF00001665151 bam 19.4 GB
EGAF00001665152 bam 24.1 GB
EGAF00001665153 bam 18.1 GB
EGAF00001665154 bam 16.1 GB
EGAF00001665155 bam 16.0 GB
EGAF00001665156 bam 11.8 GB
EGAF00001665157 bam 16.9 GB
EGAF00001665159 bam 16.9 GB
EGAF00001665160 bam 10.9 GB
EGAF00001665161 bam 23.7 GB
EGAF00001665162 bam 19.9 GB
EGAF00001665163 bam 14.2 GB
EGAF00001665164 bam 22.0 GB
EGAF00001665165 bam 8.1 GB
EGAF00001665166 bam 26.1 GB
EGAF00001665167 bam 27.1 GB
EGAF00001665168 bam 17.3 GB
EGAF00001665169 bam 11.2 GB
EGAF00001665170 bam 23.1 GB
EGAF00001665171 bam 25.1 GB
EGAF00001665172 bam 29.4 GB
EGAF00001665173 bam 21.6 GB
EGAF00001665174 bam 14.4 GB
EGAF00001665175 bam 15.7 GB
EGAF00001665176 bam 17.9 GB
EGAF00001665177 bam 24.9 GB
EGAF00001665178 bam 16.9 GB
EGAF00001665179 bam 19.1 GB
EGAF00001665180 bam 15.6 GB
EGAF00001665181 bam 13.8 GB
EGAF00001665182 bam 20.3 GB
EGAF00001665183 bam 14.5 GB
EGAF00001665184 bam 21.8 GB
EGAF00001665185 bam 15.5 GB
EGAF00001665186 bam 21.6 GB
EGAF00001665187 bam 12.3 GB
EGAF00001665188 bam 22.3 GB
EGAF00001665189 bam 16.2 GB
EGAF00001665190 bam 14.7 GB
EGAF00001665191 bam 16.9 GB
EGAF00001665192 bam 10.9 GB
EGAF00001665194 bam 15.8 GB
EGAF00001665195 bam 20.8 GB
EGAF00001665196 bam 19.2 GB
EGAF00001665197 bam 14.9 GB
EGAF00001665198 bam 16.5 GB
EGAF00001665199 bam 23.3 GB
EGAF00001665200 bam 17.2 GB
EGAF00001665201 bam 27.9 GB
EGAF00001665202 bam 26.7 GB
EGAF00001665203 bam 20.1 GB
EGAF00001665204 bam 18.3 GB
EGAF00001665205 bam 35.8 GB
EGAF00001665206 bam 16.9 GB
EGAF00001665207 bam 17.8 GB
189 Files (3.4 TB)