Aligned reads in the 2kb region centered on the HTT repeat expansion from Illumina HiSeqX and HiSeq2000 whole genome sequence data
This dataset includes bam files from 58 samples. These bam files include all read pairs where at least one of the reads aligns within 1kb of the HTT repeat expansion. These samples were sequenced using 2x150bp reads on an Illumina HiSeqX sequencer and aligned using bwa. Twelve of the samples used TruSeq Nano library preparation and 46 samples used TruSeq DNA PCR-free sample preparation.
- 02/08/2017
- 58 samples
- DAC: EGAC00001000704
- Technology: HiSeq X Ten
Venezuela HTT repeat expansions Data Access Policy
Access to the Venezuela HTT repeat expansion NGS data is available by emailing application to the data access committee and will be granted to qualified investigators for appropriate use.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001002593 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00001707675 | bam | 199.6 kB | Report |
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| EGAF00001707676 | bam | 252.4 kB | Report |
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| EGAF00001707677 | bam | 206.6 kB | Report |
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| EGAF00001707678 | bam | 228.8 kB | Report |
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| EGAF00001707679 | bam | 174.7 kB | Report |
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| EGAF00001707680 | bam | 201.2 kB | Report |
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| EGAF00001707681 | bam | 347.1 kB | Report |
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| EGAF00001707682 | bam | 158.9 kB | Report |
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| EGAF00001707683 | bam | 193.8 kB | Report |
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| EGAF00001707684 | bam | 222.7 kB | Report |
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| EGAF00001707685 | bam | 182.2 kB | Report |
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| EGAF00001707686 | bam | 175.9 kB | Report |
|
| EGAF00001707687 | bam | 226.7 kB | Report |
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| EGAF00001707688 | bam | 163.7 kB | Report |
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| EGAF00001707689 | bam | 228.9 kB | Report |
|
| EGAF00001707690 | bam | 187.2 kB | Report |
|
| EGAF00001707691 | bam | 183.2 kB | Report |
|
| EGAF00001707692 | bam | 205.2 kB | Report |
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| EGAF00001707693 | bam | 206.6 kB | Report |
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| EGAF00001707694 | bam | 249.1 kB | Report |
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| EGAF00001707695 | bam | 204.6 kB | Report |
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| EGAF00001707696 | bam | 234.4 kB | Report |
|
| EGAF00001707697 | bam | 206.4 kB | Report |
|
| EGAF00001707698 | bam | 185.5 kB | Report |
|
| EGAF00001707699 | bam | 175.3 kB | Report |
|
| EGAF00001707700 | bam | 172.7 kB | Report |
|
| EGAF00001707701 | bam | 219.3 kB | Report |
|
| EGAF00001707702 | bam | 205.1 kB | Report |
|
| EGAF00001707703 | bam | 225.5 kB | Report |
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| EGAF00001707704 | bam | 189.1 kB | Report |
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| EGAF00001707705 | bam | 297.3 kB | Report |
|
| EGAF00001707706 | bam | 191.9 kB | Report |
|
| EGAF00001707707 | bam | 197.0 kB | Report |
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| EGAF00001707708 | bam | 165.3 kB | Report |
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| EGAF00001707709 | bam | 197.0 kB | Report |
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| EGAF00001707710 | bam | 195.5 kB | Report |
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| EGAF00001707711 | bam | 185.3 kB | Report |
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| EGAF00001707712 | bam | 237.3 kB | Report |
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| EGAF00001707713 | bam | 204.1 kB | Report |
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| EGAF00001707714 | bam | 167.4 kB | Report |
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| EGAF00001707715 | bam | 216.4 kB | Report |
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| EGAF00001707716 | bam | 173.4 kB | Report |
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| EGAF00001707717 | bam | 237.1 kB | Report |
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| EGAF00001707718 | bam | 171.8 kB | Report |
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| EGAF00001707719 | bam | 289.3 kB | Report |
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| EGAF00001707720 | bam | 214.1 kB | Report |
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| EGAF00001707721 | bam | 216.3 kB | Report |
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| EGAF00001707722 | bam | 320.7 kB | Report |
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| EGAF00001707723 | bam | 219.7 kB | Report |
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| EGAF00001707724 | bam | 256.1 kB | Report |
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| EGAF00001707725 | bam | 169.8 kB | Report |
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| EGAF00001707726 | bam | 178.5 kB | Report |
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| EGAF00001707727 | bam | 172.3 kB | Report |
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| EGAF00001707728 | bam | 250.9 kB | Report |
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| EGAF00001707729 | bam | 217.2 kB | Report |
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| EGAF00001707730 | bam | 206.5 kB | Report |
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| EGAF00001707731 | bam | 153.9 kB | Report |
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| EGAF00001707732 | bam | 225.2 kB | Report |
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| 58 Files (12.1 MB) | ||||