Southern African Human Genome Programme dataset
The SAHGP characterises the genomes of 24 individuals (8 Coloured and 16 black southeastern Bantu-speakers) using deep whole genome sequencing (WGS).
- 26/11/2017
- 24 samples
- DAC: EGAC00001000734
SAHGP Policy
Ethics approval for this pilot study was obtained from the Human Research Ethics Committee (Medical) of the University of the Witwatersrand, Johannesburg (Ethics approval code: M121182). The participants were fully informed of the nature of the project. Informed consent was obtained from each participant for the sharing of DNA samples and data. The genome data was obtained using a grant from the South African National Department of Science and Technology (DST).
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001002639 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00001768069 | bam | 88.4 GB | Report |
|
| EGAF00001768070 | bai | 8.8 MB |
|
|
| EGAF00001768071 | bam | 91.1 GB | Report |
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| EGAF00001768072 | bai | 8.8 MB |
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| EGAF00001768073 | bam | 94.0 GB | Report |
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| EGAF00001768074 | bai | 8.8 MB |
|
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| EGAF00001768075 | bam | 91.7 GB | Report |
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| EGAF00001768076 | bai | 8.8 MB |
|
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| EGAF00001768077 | bam | 87.8 GB | Report |
|
| EGAF00001768078 | bai | 8.8 MB |
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| EGAF00001768079 | bam | 89.7 GB | Report |
|
| EGAF00001768080 | bai | 8.8 MB |
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| EGAF00001768081 | bam | 87.4 GB | Report |
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| EGAF00001768082 | bai | 8.8 MB |
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| EGAF00001768083 | bam | 75.0 GB | Report |
|
| EGAF00001768084 | bai | 8.8 MB |
|
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| EGAF00001768085 | bam | 83.5 GB | Report |
|
| EGAF00001768086 | bai | 8.8 MB |
|
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| EGAF00001768087 | bam | 98.4 GB | Report |
|
| EGAF00001768088 | bai | 8.8 MB |
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| EGAF00001768089 | bam | 92.7 GB | Report |
|
| EGAF00001768090 | bai | 8.8 MB |
|
|
| EGAF00001768091 | bam | 86.5 GB | Report |
|
| EGAF00001768092 | bai | 8.8 MB |
|
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| EGAF00001768093 | bam | 75.7 GB | Report |
|
| EGAF00001768094 | bai | 8.8 MB |
|
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| EGAF00001768095 | bam | 59.1 GB | Report |
|
| EGAF00001768096 | bai | 8.7 MB |
|
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| EGAF00001768097 | bam | 84.1 GB | Report |
|
| EGAF00001768098 | bai | 8.8 MB |
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| EGAF00001768099 | bam | 96.8 GB | Report |
|
| EGAF00001768100 | bai | 8.8 MB |
|
|
| EGAF00001768101 | bam | 84.3 GB | Report |
|
| EGAF00001768102 | bai | 8.8 MB |
|
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| EGAF00001768103 | bam | 82.8 GB | Report |
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| EGAF00001768104 | bai | 8.8 MB |
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| EGAF00001768105 | bam | 83.4 GB | Report |
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| EGAF00001768106 | bai | 8.8 MB |
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| EGAF00001768107 | bam | 83.8 GB | Report |
|
| EGAF00001768108 | bai | 8.8 MB |
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| EGAF00001768109 | bam | 82.8 GB | Report |
|
| EGAF00001768110 | bai | 8.8 MB |
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| EGAF00001768111 | bam | 89.0 GB | Report |
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| EGAF00001768112 | bai | 8.8 MB |
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| EGAF00001768113 | bam | 89.0 GB | Report |
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| EGAF00001768114 | bai | 8.8 MB |
|
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| EGAF00001768115 | bam | 87.3 GB | Report |
|
| EGAF00001768116 | bai | 8.8 MB |
|
|
| EGAF00001777253 | vcf | 156.5 MB | Report |
|
| EGAF00001777254 | vcf | 9.8 kB |
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| EGAF00001777255 | vcf | 334.0 MB | Report |
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| EGAF00001777256 | vcf | 2.0 GB | Report |
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| EGAF00001777257 | vcf | 120.6 MB | Report |
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| EGAF00001777258 | vcf | 23.8 GB | Report |
|
| EGAF00001777259 | vcf | 156.5 MB | Report |
|
| EGAF00001777260 | vcf | 8.6 kB |
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| EGAF00001777261 | vcf | 323.0 MB | Report |
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| EGAF00001777262 | vcf | 2.0 GB | Report |
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| EGAF00001777263 | vcf | 316.8 MB | Report |
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| EGAF00001777264 | vcf | 2.0 GB | Report |
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| EGAF00001777265 | vcf | 111.5 MB | Report |
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| EGAF00001777266 | vcf | 20.2 GB | Report |
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| EGAF00001777267 | vcf | 156.5 MB | Report |
|
| EGAF00001777268 | vcf | 9.6 kB |
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| EGAF00001777269 | vcf | 317.4 MB | Report |
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| EGAF00001777270 | vcf | 2.0 GB | Report |
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| EGAF00001777271 | vcf | 113.4 MB | Report |
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| EGAF00001777272 | vcf | 320.2 MB | Report |
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| EGAF00001777273 | vcf | 2.0 GB | Report |
|
| EGAF00001777274 | vcf | 118.5 MB | Report |
|
| EGAF00001777275 | vcf | 21.7 GB | Report |
|
| EGAF00001777276 | vcf | 156.5 MB | Report |
|
| EGAF00001777277 | vcf | 7.6 kB |
|
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| EGAF00001777278 | vcf | 309.0 MB | Report |
|
| EGAF00001777279 | vcf | 2.0 GB | Report |
|
| EGAF00001777280 | vcf | 115.9 MB | Report |
|
| EGAF00001777281 | vcf | 20.4 GB | Report |
|
| EGAF00001777282 | vcf | 156.5 MB | Report |
|
| EGAF00001777283 | vcf | 6.4 kB |
|
|
| EGAF00001777284 | vcf | 290.1 MB | Report |
|
| EGAF00001777285 | vcf | 1.8 GB | Report |
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| EGAF00001777286 | vcf | 116.2 MB | Report |
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| EGAF00001777287 | vcf | 18.3 GB | Report |
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| EGAF00001777288 | vcf | 156.5 MB | Report |
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| EGAF00001777289 | vcf | 7.9 kB |
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| EGAF00001777290 | vcf | 298.5 MB | Report |
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| EGAF00001777291 | vcf | 1.9 GB | Report |
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| EGAF00001777292 | vcf | 119.8 MB | Report |
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| EGAF00001777293 | vcf | 20.7 GB | Report |
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| EGAF00001777294 | vcf | 156.5 MB | Report |
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| EGAF00001777295 | vcf | 9.1 kB |
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| EGAF00001777296 | vcf | 285.8 MB | Report |
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| EGAF00001777297 | vcf | 1.8 GB | Report |
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| EGAF00001777298 | vcf | 110.8 MB | Report |
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| EGAF00001777299 | vcf | 22.9 GB | Report |
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| EGAF00001777300 | vcf | 156.5 MB | Report |
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| EGAF00001777301 | vcf | 7.3 kB |
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| EGAF00001777302 | vcf | 282.6 MB | Report |
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| EGAF00001777303 | vcf | 1.8 GB | Report |
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| EGAF00001777304 | vcf | 124.2 MB | Report |
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| EGAF00001777305 | vcf | 22.0 GB | Report |
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| EGAF00001777306 | vcf | 156.5 MB | Report |
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| EGAF00001777307 | vcf | 6.6 kB |
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| EGAF00001777308 | vcf | 299.9 MB | Report |
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| EGAF00001777309 | vcf | 1.8 GB | Report |
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| EGAF00001777310 | vcf | 119.2 MB | Report |
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| EGAF00001777311 | vcf | 15.9 GB | Report |
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| EGAF00001777312 | vcf | 156.5 MB | Report |
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| EGAF00001777313 | vcf | 6.6 kB |
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| EGAF00001777314 | vcf | 306.1 MB | Report |
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| EGAF00001777315 | vcf | 1.9 GB | Report |
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| EGAF00001777316 | vcf | 125.6 MB | Report |
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| EGAF00001777317 | vcf | 17.0 GB | Report |
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| EGAF00001777318 | vcf | 156.5 MB | Report |
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| EGAF00001777319 | vcf | 6.6 kB |
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| EGAF00001777320 | vcf | 310.7 MB | Report |
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| EGAF00001777321 | vcf | 1.9 GB | Report |
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| EGAF00001777322 | vcf | 114.1 MB | Report |
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| EGAF00001777323 | vcf | 18.0 GB | Report |
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| EGAF00001777324 | vcf | 156.5 MB | Report |
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| EGAF00001777325 | vcf | 10.1 kB |
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| EGAF00001777326 | vcf | 316.7 MB | Report |
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| EGAF00001777327 | vcf | 2.0 GB | Report |
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| EGAF00001777328 | vcf | 109.5 MB | Report |
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| EGAF00001777329 | vcf | 19.4 GB | Report |
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| EGAF00001777330 | vcf | 119.4 MB | Report |
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| EGAF00001777331 | vcf | 16.2 GB | Report |
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| EGAF00001777332 | vcf | 156.5 MB | Report |
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| EGAF00001777333 | vcf | 6.3 kB |
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| EGAF00001777334 | vcf | 294.7 MB | Report |
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| EGAF00001777335 | vcf | 1.9 GB | Report |
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| EGAF00001777336 | vcf | 108.4 MB | Report |
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| EGAF00001777337 | vcf | 15.3 GB | Report |
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| EGAF00001777338 | vcf | 156.5 MB | Report |
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| EGAF00001777339 | vcf | 8.8 kB |
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| EGAF00001777340 | vcf | 320.7 MB | Report |
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| EGAF00001777341 | vcf | 2.0 GB | Report |
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| EGAF00001777342 | vcf | 108.8 MB | Report |
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| EGAF00001777343 | vcf | 16.7 GB | Report |
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| EGAF00001777344 | vcf | 156.5 MB | Report |
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| EGAF00001777345 | vcf | 19.8 GB |
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| EGAF00001777346 | vcf | 156.5 MB | Report |
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| EGAF00001777347 | vcf | 9.0 kB |
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| EGAF00001777348 | vcf | 320.6 MB | Report |
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| EGAF00001777349 | vcf | 2.0 GB | Report |
|
| EGAF00001777350 | vcf | 110.4 MB | Report |
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| EGAF00001777351 | vcf | 22.7 GB | Report |
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| EGAF00001777352 | vcf | 156.5 MB | Report |
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| EGAF00001777353 | vcf | 7.0 kB |
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| EGAF00001777354 | vcf | 156.5 MB | Report |
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| EGAF00001777355 | vcf | 9.0 kB |
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| EGAF00001777356 | vcf | 316.8 MB | Report |
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| EGAF00001777357 | vcf | 2.0 GB | Report |
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| EGAF00001777358 | vcf | 105.9 MB | Report |
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| EGAF00001777359 | vcf | 20.1 GB | Report |
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| EGAF00001777360 | vcf | 156.5 MB | Report |
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| EGAF00001777361 | vcf | 8.0 kB |
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| EGAF00001777362 | vcf | 8.6 kB |
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| EGAF00001777363 | vcf | 328.9 MB | Report |
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| EGAF00001777364 | vcf | 2.1 GB | Report |
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| EGAF00001777365 | vcf | 128.9 MB | Report |
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| EGAF00001777366 | vcf | 23.2 GB | Report |
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| EGAF00001777367 | vcf | 156.5 MB | Report |
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| EGAF00001777368 | vcf | 9.2 kB |
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| EGAF00001777369 | vcf | 325.2 MB | Report |
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| EGAF00001777370 | vcf | 2.0 GB | Report |
|
| EGAF00001777371 | vcf | 122.1 MB | Report |
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| EGAF00001777372 | vcf | 21.0 GB | Report |
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| EGAF00001777373 | vcf | 156.5 MB | Report |
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| EGAF00001777374 | vcf | 7.6 kB |
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| EGAF00001777375 | vcf | 324.4 MB | Report |
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| EGAF00001777376 | vcf | 2.0 GB | Report |
|
| EGAF00001777377 | vcf | 121.1 MB | Report |
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| EGAF00001777378 | vcf | 18.3 GB | Report |
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| EGAF00001777379 | vcf | 156.5 MB | Report |
|
| EGAF00001777380 | vcf | 10.9 kB |
|
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| EGAF00001777381 | vcf | 323.2 MB | Report |
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| EGAF00001777382 | vcf | 2.0 GB | Report |
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| EGAF00001777383 | vcf | 113.7 MB | Report |
|
| EGAF00001777384 | vcf | 14.9 GB | Report |
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| EGAF00001777385 | vcf | 156.5 MB | Report |
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| EGAF00001777386 | vcf | 10.6 kB |
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| EGAF00001777387 | vcf | 308.4 MB | Report |
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| EGAF00001777388 | vcf | 2.0 GB | Report |
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| EGAF00001777389 | vcf | 87.5 MB | Report |
|
| EGAF00001777390 | vcf | 15.2 GB | Report |
|
| EGAF00001777391 | vcf | 156.5 MB | Report |
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| EGAF00001777392 | vcf | 9.4 kB |
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| EGAF00001777393 | vcf | 329.4 MB | Report |
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| EGAF00001777394 | vcf | 2.0 GB | Report |
|
| EGAF00001777395 | vcf | 118.0 MB | Report |
|
| EGAF00001777396 | vcf | 17.6 GB | Report |
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| 192 Files (2.6 TB) | ||||