Somatic mutations in 106 small intestine adenocarcinoma
106 FFPE tumor samples from small bowel were sequenced with Illumina HiSeq 4000. Exome capture was performed with NimbleGen SeqCap EZ Exome Library v3 Kit. Reads were aligned with BWA–MEM v.0.7.12 to GRCh37 reference genome. Variant calls were produced with GATK HaplotypeCaller. Variant calls were filtered against all data from gnomAD database using allele frequency threshold 0.0001 in order to remove germline variation.
- 25/02/2018
- 106 samples
- DAC: EGAC00001000649
Policy for the pseudomyxoma peritonei exome sequencing vcf-files
Permission to access the pseudomyxoma peritonei exome sequencing vcf-files will be given to pseudomyxoma peritonei research.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001002559 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF00001847651 | vcf | 849.6 kB | Report |
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| EGAF00001847652 | vcf | 329.1 kB | Report |
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| EGAF00001847653 | vcf | 294.9 kB | Report |
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| EGAF00001847654 | vcf | 312.9 kB | Report |
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| EGAF00001847655 | vcf | 388.3 kB | Report |
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| EGAF00001847656 | vcf | 343.3 kB | Report |
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| EGAF00001847657 | vcf | 447.8 kB | Report |
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| EGAF00001847658 | vcf | 382.7 kB | Report |
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| EGAF00001847659 | vcf | 304.0 kB | Report |
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| EGAF00001847660 | vcf | 357.2 kB | Report |
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| EGAF00001847661 | vcf | 327.8 kB | Report |
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| EGAF00001847662 | vcf | 320.0 kB | Report |
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| EGAF00001847681 | vcf | 306.5 kB | Report |
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| EGAF00001847682 | vcf | 315.2 kB | Report |
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| EGAF00001847683 | vcf | 1.5 MB | Report |
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| EGAF00001847684 | vcf | 297.3 kB | Report |
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| EGAF00001847685 | vcf | 456.8 kB | Report |
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| EGAF00001847686 | vcf | 333.5 kB | Report |
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| EGAF00001847687 | vcf | 316.0 kB | Report |
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| EGAF00001847688 | vcf | 331.6 kB | Report |
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| EGAF00001847689 | vcf | 697.8 kB | Report |
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| EGAF00001847690 | vcf | 296.6 kB | Report |
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| EGAF00001847691 | vcf | 315.0 kB | Report |
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| EGAF00001847692 | vcf | 351.5 kB | Report |
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| EGAF00001847711 | vcf | 355.1 kB | Report |
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| EGAF00001847960 | vcf | 268.9 kB | Report |
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| EGAF00001847961 | vcf | 265.4 kB | Report |
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| EGAF00001847962 | vcf | 398.0 kB | Report |
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| EGAF00001847963 | vcf | 345.1 kB | Report |
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| EGAF00001847964 | vcf | 329.5 kB | Report |
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| EGAF00001847965 | vcf | 311.0 kB | Report |
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| EGAF00001847966 | vcf | 322.7 kB | Report |
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| EGAF00001847967 | vcf | 336.8 kB | Report |
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| EGAF00001847968 | vcf | 293.8 kB | Report |
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| EGAF00001848003 | vcf | 324.8 kB | Report |
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| EGAF00001848004 | vcf | 323.3 kB | Report |
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| EGAF00001848005 | vcf | 284.9 kB | Report |
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| EGAF00001848006 | vcf | 1.5 MB | Report |
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| EGAF00001848007 | vcf | 329.2 kB | Report |
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| EGAF00001848008 | vcf | 338.1 kB | Report |
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| EGAF00001848009 | vcf | 2.6 MB | Report |
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| EGAF00001848010 | vcf | 326.5 kB | Report |
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| EGAF00001848011 | vcf | 392.8 kB | Report |
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| EGAF00001848012 | vcf | 339.5 kB | Report |
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| EGAF00001848013 | vcf | 294.9 kB | Report |
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| EGAF00001848014 | vcf | 355.8 kB | Report |
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| EGAF00001848037 | vcf | 295.7 kB | Report |
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| EGAF00001848038 | vcf | 321.0 kB | Report |
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| EGAF00001848039 | vcf | 2.0 MB | Report |
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| EGAF00001848040 | vcf | 304.8 kB | Report |
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| EGAF00001848041 | vcf | 2.0 MB | Report |
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| EGAF00001848042 | vcf | 303.0 kB | Report |
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| EGAF00001848043 | vcf | 346.1 kB | Report |
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| EGAF00001848044 | vcf | 282.5 kB | Report |
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| EGAF00001848045 | vcf | 272.9 kB | Report |
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| EGAF00001848046 | vcf | 439.4 kB | Report |
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| EGAF00001848047 | vcf | 327.4 kB | Report |
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| EGAF00001848048 | vcf | 372.4 kB | Report |
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| EGAF00001848071 | vcf | 312.6 kB | Report |
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| EGAF00001848072 | vcf | 502.3 kB |
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| EGAF00001848073 | vcf | 375.2 kB | Report |
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| EGAF00001848074 | vcf | 308.3 kB | Report |
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| EGAF00001848075 | vcf | 1.1 MB | Report |
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| EGAF00001848076 | vcf | 1.6 MB |
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| EGAF00001848077 | vcf | 364.3 kB | Report |
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| EGAF00001848078 | vcf | 485.9 kB | Report |
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| EGAF00001848079 | vcf | 275.1 kB | Report |
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| EGAF00001848080 | vcf | 287.6 kB | Report |
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| EGAF00001848081 | vcf | 812.8 kB | Report |
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| EGAF00001848082 | vcf | 379.5 kB | Report |
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| EGAF00001848111 | vcf | 375.1 kB | Report |
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| EGAF00001848112 | vcf | 307.0 kB | Report |
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| EGAF00001848113 | vcf | 294.4 kB | Report |
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| EGAF00001848114 | vcf | 312.6 kB | Report |
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| EGAF00001848115 | vcf | 309.1 kB | Report |
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| EGAF00001848116 | vcf | 325.7 kB | Report |
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| EGAF00001848117 | vcf | 350.3 kB | Report |
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| EGAF00001848118 | vcf | 1.8 MB |
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| EGAF00001848119 | vcf | 274.1 kB | Report |
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| EGAF00001848120 | vcf | 1.1 MB |
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| EGAF00001848121 | vcf | 481.2 kB | Report |
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| EGAF00001848122 | vcf | 358.7 kB | Report |
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| EGAF00001848149 | vcf | 3.4 MB | Report |
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| EGAF00001848150 | vcf | 287.3 kB | Report |
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| EGAF00001848151 | vcf | 279.6 kB | Report |
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| EGAF00001848152 | vcf | 279.7 kB | Report |
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| EGAF00001848153 | vcf | 300.2 kB | Report |
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| EGAF00001848154 | vcf | 276.3 kB | Report |
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| EGAF00001848155 | vcf | 318.2 kB | Report |
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| EGAF00001848156 | vcf | 287.2 kB | Report |
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| EGAF00001848157 | vcf | 286.3 kB | Report |
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| EGAF00001848158 | vcf | 839.8 kB | Report |
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| EGAF00001848159 | vcf | 350.8 kB | Report |
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| EGAF00001848160 | vcf | 275.6 kB | Report |
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| EGAF00001848179 | vcf | 339.1 kB | Report |
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| EGAF00001848180 | vcf | 340.4 kB | Report |
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| EGAF00001848181 | vcf | 314.8 kB | Report |
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| EGAF00001848182 | vcf | 335.0 kB | Report |
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| EGAF00001848183 | vcf | 394.0 kB | Report |
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| EGAF00001848184 | vcf | 343.9 kB | Report |
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| EGAF00001848185 | vcf | 282.6 kB | Report |
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| EGAF00001848186 | vcf | 297.7 kB | Report |
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| EGAF00001848187 | vcf | 854.7 kB | Report |
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| EGAF00001848188 | vcf | 318.0 kB | Report |
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| EGAF00001848189 | vcf | 306.5 kB | Report |
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| EGAF00001848190 | vcf | 359.7 kB | Report |
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| 106 Files (52.9 MB) | ||||