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Recalibrated alignment files of Saudi Thyroid Cancer

The dataset consists of samples from papillary thyroid cancer patients. A total of 292 DNA samples from blood/normal and cancer tissue are subjected to whole exome sequencing using Illumina. The fastq files generated were aligned with reference genome ‘hg19’, duplicates were marked, realignment around indels and quality recalibration were performed to produce good quality variants. The recalibrated “.bam” files are included with this dataset.​

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000680 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001847645 bam 13.6 GB
EGAF00001847646 bam 11.7 GB
EGAF00001847647 bam 12.0 GB
EGAF00001847648 bam 11.5 GB
EGAF00001847649 bam 12.7 GB
EGAF00001847650 bam 10.7 GB
EGAF00001847663 bam 5.0 GB
EGAF00001847664 bam 5.4 GB
EGAF00001847665 bam 6.0 GB
EGAF00001847666 bam 6.9 GB
EGAF00001847667 bam 8.8 GB
EGAF00001847668 bam 6.1 GB
EGAF00001847669 bam 15.7 GB
EGAF00001847670 bam 15.8 GB
EGAF00001847671 bam 14.0 GB
EGAF00001847672 bam 14.2 GB
EGAF00001847673 bam 12.1 GB
EGAF00001847674 bam 13.4 GB
EGAF00001847675 bam 10.0 GB
EGAF00001847676 bam 12.4 GB
EGAF00001847677 bam 9.4 GB
EGAF00001847678 bam 9.9 GB
EGAF00001847679 bam 10.1 GB
EGAF00001847680 bam 10.4 GB
EGAF00001847693 bam 6.6 GB
EGAF00001847694 bam 6.9 GB
EGAF00001847695 bam 7.2 GB
EGAF00001847696 bam 5.9 GB
EGAF00001847697 bam 9.0 GB
EGAF00001847698 bam 8.9 GB
EGAF00001847699 bam 14.5 GB
EGAF00001847700 bam 15.9 GB
EGAF00001847701 bam 14.7 GB
EGAF00001847702 bam 12.8 GB
EGAF00001847703 bam 12.3 GB
EGAF00001847704 bam 12.9 GB
EGAF00001847705 bam 11.7 GB
EGAF00001847706 bam 9.9 GB
EGAF00001847707 bam 14.2 GB
EGAF00001847708 bam 10.0 GB
EGAF00001847709 bam 10.1 GB
EGAF00001847710 bam 8.6 GB
EGAF00001847712 bam 5.5 GB
EGAF00001847713 bam 7.6 GB
EGAF00001847714 bam 5.2 GB
EGAF00001847715 bam 9.8 GB
EGAF00001847716 bam 10.7 GB
EGAF00001847717 bam 6.1 GB
EGAF00001847718 bam 15.9 GB
EGAF00001847719 bam 14.8 GB
EGAF00001847720 bam 18.9 GB
EGAF00001847721 bam 12.8 GB
EGAF00001847722 bam 12.7 GB
EGAF00001847723 bam 15.9 GB
EGAF00001847724 bam 11.7 GB
EGAF00001847725 bam 10.4 GB
EGAF00001847726 bam 12.8 GB
EGAF00001847727 bam 9.9 GB
EGAF00001847728 bam 10.4 GB
EGAF00001847729 bam 6.9 GB
EGAF00001847730 bam 7.8 GB
EGAF00001847731 bam 7.1 GB
EGAF00001847732 bam 7.5 GB
EGAF00001847733 bam 6.0 GB
EGAF00001847734 bam 6.2 GB
EGAF00001847735 bam 5.8 GB
EGAF00001847736 bam 15.2 GB
EGAF00001847737 bam 16.5 GB
EGAF00001847738 bam 15.2 GB
EGAF00001847739 bam 13.8 GB
EGAF00001847742 bam 11.6 GB
EGAF00001847743 bam 10.4 GB
EGAF00001847744 bam 10.2 GB
EGAF00001847745 bam 10.4 GB
EGAF00001847746 bam 9.3 GB
EGAF00001847747 bam 10.3 GB
EGAF00001847764 bam 5.5 GB
EGAF00001847765 bam 7.8 GB
EGAF00001847766 bam 7.9 GB
EGAF00001847767 bam 6.3 GB
EGAF00001847768 bam 5.9 GB
EGAF00001847769 bam 15.8 GB
EGAF00001847770 bam 14.0 GB
EGAF00001847771 bam 15.3 GB
EGAF00001847772 bam 14.3 GB
EGAF00001847773 bam 14.0 GB
EGAF00001847774 bam 13.3 GB
EGAF00001847775 bam 13.4 GB
EGAF00001847776 bam 12.1 GB
EGAF00001847777 bam 10.4 GB
EGAF00001847778 bam 9.9 GB
EGAF00001847779 bam 10.6 GB
EGAF00001847780 bam 9.9 GB
EGAF00001847781 bam 8.0 GB
EGAF00001847814 bam 8.9 GB
EGAF00001847815 bam 8.0 GB
EGAF00001847816 bam 8.8 GB
EGAF00001847817 bam 15.5 GB
EGAF00001847818 bam 12.0 GB
EGAF00001847819 bam 10.7 GB
EGAF00001847820 bam 13.0 GB
EGAF00001847821 bam 15.6 GB
EGAF00001847822 bam 16.0 GB
EGAF00001847823 bam 11.1 GB
EGAF00001847824 bam 13.7 GB
EGAF00001847825 bam 12.4 GB
EGAF00001847826 bam 10.7 GB
EGAF00001847827 bam 10.6 GB
EGAF00001847828 bam 11.6 GB
EGAF00001847829 bam 9.6 GB
EGAF00001847830 bam 9.6 GB
EGAF00001847831 bam 10.9 GB
EGAF00001847867 bam 8.6 GB
EGAF00001847868 bam 9.1 GB
EGAF00001847869 bam 8.5 GB
EGAF00001847870 bam 11.8 GB
EGAF00001847871 bam 10.5 GB
EGAF00001847872 bam 17.1 GB
EGAF00001847873 bam 14.7 GB
EGAF00001847874 bam 10.5 GB
EGAF00001847875 bam 15.7 GB
EGAF00001847876 bam 24.1 GB
EGAF00001847877 bam 11.7 GB
EGAF00001847878 bam 13.0 GB
EGAF00001847879 bam 8.6 GB
EGAF00001847880 bam 11.8 GB
EGAF00001847881 bam 10.9 GB
EGAF00001847882 bam 9.9 GB
EGAF00001847883 bam 9.0 GB
EGAF00001847884 bam 9.2 GB
EGAF00001847904 bam 8.0 GB
EGAF00001847905 bam 5.0 GB
EGAF00001847906 bam 6.3 GB
EGAF00001847907 bam 18.3 GB
EGAF00001847908 bam 20.0 GB
EGAF00001847909 bam 16.7 GB
EGAF00001847910 bam 11.7 GB
EGAF00001847911 bam 12.3 GB
EGAF00001847912 bam 10.0 GB
EGAF00001847913 bam 11.9 GB
EGAF00001847914 bam 12.8 GB
EGAF00001847915 bam 10.8 GB
EGAF00001847916 bam 10.6 GB
EGAF00001847917 bam 30.6 GB
EGAF00001847918 bam 10.2 GB
EGAF00001847919 bam 10.0 GB
EGAF00001847920 bam 10.1 GB
EGAF00001847921 bam 10.5 GB
EGAF00001847941 bam 6.3 GB
EGAF00001847942 bam 5.3 GB
EGAF00001847943 bam 5.7 GB
EGAF00001847944 bam 4.8 GB
EGAF00001847945 bam 5.3 GB
EGAF00001847946 bam 7.9 GB
EGAF00001847947 bam 9.3 GB
EGAF00001847948 bam 18.1 GB
EGAF00001847949 bam 13.6 GB
EGAF00001847950 bam 11.3 GB
EGAF00001847951 bam 9.3 GB
EGAF00001847952 bam 13.1 GB
EGAF00001847953 bam 13.0 GB
EGAF00001847954 bam 10.3 GB
EGAF00001847955 bam 13.7 GB
EGAF00001847956 bam 9.9 GB
EGAF00001847957 bam 10.2 GB
EGAF00001847958 bam 33.1 GB
EGAF00001847959 bam 10.0 GB
EGAF00001847985 bam 6.4 GB
EGAF00001847986 bam 5.8 GB
EGAF00001847987 bam 5.7 GB
EGAF00001847988 bam 5.3 GB
EGAF00001847989 bam 7.4 GB
EGAF00001847990 bam 9.4 GB
EGAF00001847991 bam 56.7 GB
EGAF00001847992 bam 61.0 GB
EGAF00001847993 bam 55.2 GB
EGAF00001847994 bam 9.6 GB
EGAF00001847995 bam 13.0 GB
EGAF00001847996 bam 8.6 GB
EGAF00001847997 bam 10.4 GB
EGAF00001847998 bam 12.5 GB
EGAF00001847999 bam 12.3 GB
EGAF00001848000 bam 9.5 GB
EGAF00001848001 bam 30.2 GB
EGAF00001848002 bam 10.9 GB
EGAF00001848019 bam 5.5 GB
EGAF00001848020 bam 5.6 GB
EGAF00001848021 bam 5.8 GB
EGAF00001848022 bam 5.3 GB
EGAF00001848023 bam 6.1 GB
EGAF00001848024 bam 6.0 GB
EGAF00001848025 bam 58.7 GB
EGAF00001848026 bam 61.4 GB
EGAF00001848027 bam 16.5 GB
EGAF00001848028 bam 12.9 GB
EGAF00001848029 bam 14.2 GB
EGAF00001848030 bam 11.6 GB
EGAF00001848031 bam 12.4 GB
EGAF00001848032 bam 11.0 GB
EGAF00001848033 bam 15.3 GB
EGAF00001848034 bam 9.1 GB
EGAF00001848035 bam 9.5 GB
EGAF00001848036 bam 8.8 GB
EGAF00001848053 bam 5.9 GB
EGAF00001848054 bam 5.9 GB
EGAF00001848055 bam 5.6 GB
EGAF00001848056 bam 5.9 GB
EGAF00001848057 bam 5.5 GB
EGAF00001848058 bam 8.1 GB
EGAF00001848059 bam 16.1 GB
EGAF00001848060 bam 26.3 GB
EGAF00001848061 bam 19.1 GB
EGAF00001848062 bam 9.0 GB
EGAF00001848063 bam 10.9 GB
EGAF00001848064 bam 9.3 GB
EGAF00001848065 bam 10.3 GB
EGAF00001848066 bam 11.4 GB
EGAF00001848067 bam 12.3 GB
EGAF00001848068 bam 9.7 GB
EGAF00001848069 bam 9.3 GB
EGAF00001848070 bam 8.3 GB
EGAF00001848093 bam 5.8 GB
EGAF00001848094 bam 6.7 GB
EGAF00001848095 bam 18.7 GB
EGAF00001848096 bam 5.1 GB
EGAF00001848097 bam 6.5 GB
EGAF00001848098 bam 8.8 GB
EGAF00001848099 bam 24.8 GB
EGAF00001848100 bam 27.3 GB
EGAF00001848101 bam 12.0 GB
EGAF00001848102 bam 13.0 GB
EGAF00001848103 bam 11.1 GB
EGAF00001848104 bam 12.9 GB
EGAF00001848105 bam 13.2 GB
EGAF00001848106 bam 10.2 GB
EGAF00001848107 bam 15.7 GB
EGAF00001848108 bam 11.9 GB
EGAF00001848109 bam 11.0 GB
EGAF00001848110 bam 11.5 GB
EGAF00001848131 bam 13.5 GB
EGAF00001848132 bam 5.7 GB
EGAF00001848133 bam 6.3 GB
EGAF00001848134 bam 9.6 GB
EGAF00001848135 bam 8.5 GB
EGAF00001848136 bam 10.1 GB
EGAF00001848137 bam 13.9 GB
EGAF00001848138 bam 16.8 GB
EGAF00001848139 bam 16.7 GB
EGAF00001848140 bam 13.3 GB
EGAF00001848141 bam 13.3 GB
EGAF00001848142 bam 10.7 GB
EGAF00001848143 bam 11.5 GB
EGAF00001848144 bam 12.6 GB
EGAF00001848145 bam 12.0 GB
EGAF00001848146 bam 12.3 GB
EGAF00001848147 bam 11.0 GB
EGAF00001848148 bam 10.4 GB
EGAF00001848161 bam 5.9 GB
EGAF00001848162 bam 6.4 GB
EGAF00001848163 bam 5.3 GB
EGAF00001848164 bam 5.9 GB
EGAF00001848165 bam 5.7 GB
EGAF00001848166 bam 9.1 GB
EGAF00001848167 bam 20.1 GB
EGAF00001848168 bam 22.5 GB
EGAF00001848169 bam 21.7 GB
EGAF00001848170 bam 13.8 GB
EGAF00001848171 bam 11.0 GB
EGAF00001848172 bam 14.8 GB
EGAF00001848173 bam 10.9 GB
EGAF00001848174 bam 11.7 GB
EGAF00001848175 bam 10.8 GB
EGAF00001848176 bam 10.3 GB
EGAF00001848177 bam 10.5 GB
EGAF00001848178 bam 13.1 GB
EGAF00001848191 bam 5.8 GB
EGAF00001848192 bam 5.5 GB
EGAF00001848193 bam 6.4 GB
EGAF00001848194 bam 9.5 GB
EGAF00001848195 bam 8.4 GB
EGAF00001848196 bam 11.1 GB
EGAF00001848197 bam 21.5 GB
EGAF00001848198 bam 15.2 GB
EGAF00001848199 bam 14.2 GB
EGAF00001848200 bam 13.4 GB
EGAF00001848201 bam 13.4 GB
EGAF00001848202 bam 13.6 GB
EGAF00001848203 bam 12.2 GB
EGAF00001848204 bam 12.4 GB
EGAF00001848205 bam 10.3 GB
290 Files (3.5 TB)