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Whole exome analysis of adult type ovarian granulosa cell tumors

Whole exome data from tumor/normal pairs for adult type ovarian granulosa cell tumor sequencing project. This data set contains 24 tumor whome exomes and 20 matched normal whole exomes generated using the Agilent V4 exome hybrid capture platform, with sequencing performed on an Illumina HiSeq 2000. This dataset contains BAM files generated by aligning paired-end reads to the hg19 reference genome.

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UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER DEPARTMENT OF GENOMIC MEDICINE - DATA ACCESS AGREEMENT

This agreement discloses the conditions under which any human genomic, proteomic, and immune profiling Data generated by the University of Texas Department of Genomic Medicine is to be accessed from public databases such as dbGAP and EGA. By signing this agreement, you, the User and Associates (collaborators, staff scientists, and trainees) agree to abide by the terms and conditions of data access set out in this agreement. Terms and Conditions: 1. The Data is to be used for research only including analyses of somatic, germline, structural variants, differential expression patterns, and immune infiltrates. 2. The Data is to be stored in an appropriate password-protected computational infrastructure monitored by your institutional information technology group. 3. You, as the User, are a laboratory head, principal investigator and take responsibility for the distribution, use, storage, and management of the Data in question. 4. You, the User and any collaborators, staff scientists, and trainees are to be co-signees of an IRB-protocol for the use of this data. The IRB protocol number should be referenced in the Materials Transfers Agreement. 5. The Materials Transfers Agreement should also state the purpose and goal of the Data usage. 6. You may use the Data for research that could result in intellectual property or commercial product. 7. Confidentiality of Data Subjects will be preserved by you the User and Associates. 8. The accession number of the study under which the Data is received should be incorporated and referenced appropriately in any publication that results from use of the Data. 9. Any breach of this agreement will result in termination and immediate permanent deletion of Data. The Data is subject to international laws.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002833 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001871822 bam 27.3 GB
EGAF00001871823 bam 11.4 GB
EGAF00001871824 bam 32.0 GB
EGAF00001871825 bam 30.8 GB
EGAF00001871826 bam 14.7 GB
EGAF00001871827 bam 37.3 GB
EGAF00001871828 bam 11.1 GB
EGAF00001871829 bam 36.4 GB
EGAF00001871830 bam 12.0 GB
EGAF00001871831 bam 26.6 GB
EGAF00001871832 bam 11.0 GB
EGAF00001871833 bam 22.0 GB
EGAF00001871834 bam 9.5 GB
EGAF00001871835 bam 26.7 GB
EGAF00001871836 bam 11.6 GB
EGAF00001871837 bam 28.1 GB
EGAF00001871838 bam 14.8 GB
EGAF00001871839 bam 27.3 GB
EGAF00001871840 bam 13.5 GB
EGAF00001871841 bam 31.4 GB
EGAF00001871842 bam 13.3 GB
EGAF00001871843 bam 38.9 GB
EGAF00001871844 bam 14.1 GB
EGAF00001871845 bam 30.1 GB
EGAF00001871846 bam 12.6 GB
EGAF00001871847 bam 27.6 GB
EGAF00001871848 bam 10.9 GB
EGAF00001871849 bam 29.9 GB
EGAF00001871850 bam 29.5 GB
EGAF00001871851 bam 11.4 GB
EGAF00001871852 bam 26.7 GB
EGAF00001871853 bam 15.6 GB
EGAF00001871854 bam 27.7 GB
EGAF00001871855 bam 12.0 GB
EGAF00001871856 bam 28.9 GB
EGAF00001871857 bam 14.1 GB
EGAF00001871858 bam 30.8 GB
EGAF00001871859 bam 13.5 GB
EGAF00001871860 bam 25.7 GB
EGAF00001871861 bam 25.4 GB
EGAF00001871862 bam 13.1 GB
EGAF00001871863 bam 31.2 GB
EGAF00001871864 bam 12.1 GB
EGAF00001871865 bam 27.8 GB
44 Files (958.5 GB)