About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Transcriptome sequencing of Gingivo-buccal Cancer - ICGC India Project YR03

This dataset pertains to transcriptome sequencing of paired RNA samples.RNA was isolated from the tumor and adjacent normal tissues of 12 patients (24 samples). We have performed rRNA removal followed by total RNA sequencing in Illumina HiSeq platform.We have uploaded TopHat2 aligned BAM files.

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DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

ICGC Data Access

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002851 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00001871996 bam 11.1 GB Report
EGAF00001871997 bam 6.7 GB Report
EGAF00001871998 bam 10.7 GB Report
EGAF00001871999 bam 10.0 GB Report
EGAF00001872000 bam 9.3 GB Report
EGAF00001872001 bam 12.5 GB Report
EGAF00001872002 bam 10.1 GB Report
EGAF00001872003 bam 6.7 GB Report
EGAF00001872004 bam 9.8 GB Report
EGAF00001872005 bam 7.9 GB Report
EGAF00001872006 bam 7.1 GB Report
EGAF00001872007 bam 7.3 GB Report
EGAF00001872008 bam 6.8 GB Report
EGAF00001872009 bam 7.4 GB Report
EGAF00001872010 bam 7.1 GB Report
EGAF00001872011 bam 9.0 GB Report
EGAF00001872012 bam 14.3 GB Report
EGAF00001872013 bam 9.1 GB Report
EGAF00001872014 bam 9.3 GB Report
EGAF00001872015 bam 8.5 GB Report
EGAF00001872016 bam 8.0 GB Report
EGAF00001872017 bam 7.7 GB Report
EGAF00001872018 bam 7.2 GB Report
EGAF00001872019 bam 8.5 GB Report
24 Files (212.0 GB)