Need Help?

RNA-seq of Liver Cancer

The present series corresponds to 161 RNA-seq samples from tumors with matched WES or WGS. Hepatocellular carcinoma (HCC) accounts for more than 90% of liver cancers, and is a major health problem. It is the 3rd cause of cancer-related mortality. Advances in genomic analyses have formed a comprehensive understanding of different underlying pathobiological layers resulting in hepatocarcinogenesis. Thus, the development of next-generation sequencing technologies has made it possible to generate more comprehensive catalogues of somatic alteration events (single nucleotide substitutions, structural variations, and epigenetic changes) in liver cancer genome than ever before.

Request Access

FunGeST - Functional Genomics from cancer research to personalized medicine

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets to which the Data Recipient has requested access. The Data Recipient agrees to be bound by these terms and conditions. Definitions GDPR: This DAA ensures that both parties comply with the Regulation (EU) 2016/679 of the European Parliament and of the Council, known as the General Data Protection Regulation (herein referred to as the ‘GDPR’). Data: Refers to managed controlled access datasets (the Data). Under this Agreement, the Data is pseudonymised. Data Access/Transfer: Refers to an Institution’s right to request access to the Data and retrieve it from the Data Controller’s Institution upon approval of this DAA by the corresponding Data Access Committee (DAC) within the Data Controller’s Institution. Data Handling: Refers to an Institution’s ability to analyse and manipulate the Data within its own computer network. Data Controller(s): The Institution responsible for data generation and pseudonymization. Data Subject: Refers to any individual who is the source of any Data covered by this Agreement. Data Recipient (‘You’): The Institution that requests access to the Data through this Agreement. Authorized Personnel: The individual(s) at the Institution requesting Access to the Data. Research Project: The Project for which You have requested Access to the Data. Publications: Refers, without limitation, to any and all articles published in print journals, electronic journals, reviews, books, posters, and other written and verbal presentations of Research that have been accepted by peer review. FunGeST: This Data Access Agreement (DAA) has been developed for the FunGeST functional genomics projects, with the Centre de Recherche des Cordeliers (CRC) in Paris, France serving as the Data Controller. Terms and Conditions 1. Data Usage: The Data Recipient agrees to use the Data only for the specified Research Project and for research purposes only, not for any profit-making activities. 2. Confidentiality and Data Protection: The Data Recipient commits to maintaining the confidentiality of all information and Data related to Data Subjects, and will neither use nor attempt to use the Data in a way that compromises or violates the confidentiality and privacy of Data Subjects. 3. Data Subject Identification: The Data Recipient will not attempt to identify Data Subjects. 4. Data Linking: The Data Recipient will not link or combine the Data with other information that could re-identify the Data Subjects, even if such information is formally accessible or freely available. 5. Usage Restrictions: The Data Recipient agrees to consider any usage restrictions stemming from consent, applicable laws, or internal policies of their institution. 6. IT Security Measures The Data Recipient agrees to follow an up-to-date IT policy that includes: (a) Logging and auditing access to the Data and the computer network. (b) Password protection and/or strong data encryption. (c) Virus and malware protection. (d) Secure backup procedures. (e) Access control. (f) Incident response. 7. Project Duration: The Data Recipient aknowledges that access to the Data is granted for the duration of the specified Research Project. Any use of the Data for a different project requires prior approval through a new agreement. 8. Intellectual Property: The Data Recipient acknowledges that this agreement does not transfer any intellectual property rights to the Data. The Data Recipient will not assert intellectual property claims over the Data or use intellectual property protections to restrict access or use of any portion of the Data. However, the Data Recipient may conduct additional research that enhances the value of the Data and may obtain intellectual property rights over resulting discoveries, provided that licensing policies align with OECD guidelines and do not impede further research. 9. Legal Responsibility: The Data Recipient acknowledges that the Data Controller bears no legal responsibility for the accuracy or completeness of the Data, and the Data Recipient accepts no liability for any indirect, consequential, or incidental damages or losses arising from the use of the Data. 10. Liability: The Data Recipient agrees to hold harmless the Data Subjects and Data Controllers against any and all liabilities, demands, damages, expenses, and losses arising from the use of the Data. This includes, but is not limited to, any legal claims or financial losses resulting from misuse, breach of confidentiality, or failure to comply with the terms and conditions set forth in this agreement. The Data Recipient acknowledges full responsibility for ensuring the security and proper use of the Data. 11. Publication and Acknowledgement: The Data Recipient agrees that any publications, presentations, or disclosures based on the Data must appropriately cite the Data source. All papers and outputs must include a citation according to the guidelines provided with respective EGAD dataset ID. A list of required citations and acknowledgements will be provided along with the dataset and must be adhered to in all relevant research outputs. (see Section III). 12. Personnel Compliance and Data Confidentiality: The Data Recipient agrees to restrict the use of the Data to their Institution, ensuring that all Authorized Personnel are fully informed of and comply with the terms of this agreement. The Data Recipient will not disclose any information contained in the Data to third parties unless specifically authorized by the Research Project or with written consent from the Data Controllers. The Data Recipient will not transfer the Data outside their Institution without prior written approval from the Data Controllers. If the Data is to be shared with an external collaborator, the collaborator must first enter into a separate Data Access Agreement to obtain access. 13. Security Breach: In case of a security breach resulting from accidental use of Data leading to disclosure, the Data Recipient must report it to the Data Controllers within 72 hours and follow GDPR rules. In case of a non-accidental breach, the Data Recipient must destroy any held Data. 14. Termination: The Data Recipient acknowledges that this agreement will be terminated immediately in the event of any breach by the recipient or upon the termination of the agreement. 15. Dispute Resolution Process: The Data Recipient will make every effort to resolve disputes amicably with the Data Controllers. If a resolution is not reached within 60 days, the matter will be submitted to arbitration, conducted in English unless otherwise agreed, with the arbitration decision being final and binding. 16. Governing Law and Jurisdiction: The Data Recipient agrees that this agreement, along with any related disputes, will be governed by French law and fall under the exclusive jurisdiction of French courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002879 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001883027 bam 6.3 GB
EGAF00001883028 bam 5.7 GB
EGAF00001883029 bam 5.7 GB
EGAF00001883030 bam 6.1 GB
EGAF00001883031 bam 5.3 GB
EGAF00001883032 bam 5.2 GB
EGAF00001883033 bam 7.0 GB
EGAF00001883034 bam 7.4 GB
EGAF00001883035 bam 6.3 GB
EGAF00001883036 bam 6.2 GB
EGAF00001883037 bam 4.7 GB
EGAF00001883038 bam 6.2 GB
EGAF00001883039 bam 6.2 GB
EGAF00001883040 bam 5.9 GB
EGAF00001883041 bam 8.4 GB
EGAF00001883042 bam 7.2 GB
EGAF00001883043 bam 7.3 GB
EGAF00001883044 bam 9.4 GB
EGAF00001883045 bam 7.9 GB
EGAF00001883046 bam 6.7 GB
EGAF00001883047 bam 7.2 GB
EGAF00001883048 bam 7.6 GB
EGAF00001883049 bam 8.5 GB
EGAF00001883050 bam 7.5 GB
EGAF00001883051 bam 6.6 GB
EGAF00001883052 bam 9.6 GB
EGAF00001883053 bam 6.3 GB
EGAF00001883054 bam 8.3 GB
EGAF00001883055 bam 7.3 GB
EGAF00001883056 bam 8.0 GB
EGAF00001883057 bam 7.9 GB
EGAF00001883058 bam 8.0 GB
EGAF00001883059 bam 6.8 GB
EGAF00001883060 bam 6.4 GB
EGAF00001883061 bam 7.6 GB
EGAF00001883062 bam 7.8 GB
EGAF00001883063 bam 7.8 GB
EGAF00001883064 bam 6.9 GB
EGAF00001883065 bam 6.7 GB
EGAF00001883066 bam 6.9 GB
EGAF00001883067 bam 6.4 GB
EGAF00001883068 bam 7.1 GB
EGAF00001883069 bam 6.6 GB
EGAF00001883070 bam 6.0 GB
EGAF00001883071 bam 7.0 GB
EGAF00001883072 bam 7.5 GB
EGAF00001883073 bam 8.7 GB
EGAF00001883074 bam 6.0 GB
EGAF00001883075 bam 7.7 GB
EGAF00001883076 bam 6.2 GB
EGAF00001883077 bam 7.4 GB
EGAF00001883078 bam 8.2 GB
EGAF00001883079 bam 7.0 GB
EGAF00001883080 bam 5.5 GB
EGAF00001883081 bam 6.6 GB
EGAF00001883082 bam 6.5 GB
EGAF00001883083 bam 6.3 GB
EGAF00001883084 bam 7.3 GB
EGAF00001883085 bam 7.2 GB
EGAF00001883086 bam 8.0 GB
EGAF00001883087 bam 6.0 GB
EGAF00001883088 bam 5.5 GB
EGAF00001883089 bam 6.8 GB
EGAF00001883090 bam 6.2 GB
EGAF00001883091 bam 6.6 GB
EGAF00001883092 bam 6.4 GB
EGAF00001883093 bam 8.0 GB
EGAF00001883094 bam 6.7 GB
EGAF00001883095 bam 7.7 GB
EGAF00001883096 bam 6.8 GB
EGAF00001883097 bam 7.3 GB
EGAF00001883098 bam 7.5 GB
EGAF00001883099 bam 7.2 GB
EGAF00001883100 bam 7.3 GB
EGAF00001883101 bam 6.7 GB
EGAF00001883102 bam 6.5 GB
EGAF00001883103 bam 6.6 GB
EGAF00001883104 bam 6.3 GB
EGAF00001883105 bam 7.4 GB
EGAF00001883106 bam 6.9 GB
EGAF00001883107 bam 6.1 GB
EGAF00001883108 bam 5.8 GB
EGAF00001883109 bam 7.8 GB
EGAF00001883110 bam 6.3 GB
EGAF00001883111 bam 5.8 GB
EGAF00001883112 bam 8.6 GB
EGAF00001883113 bam 6.9 GB
EGAF00001883114 bam 6.5 GB
EGAF00001883115 bam 6.1 GB
EGAF00001883116 bam 5.9 GB
EGAF00001883117 bam 6.0 GB
EGAF00001883118 bam 7.2 GB
EGAF00001883119 bam 7.3 GB
EGAF00001883120 bam 6.0 GB
EGAF00001883121 bam 6.9 GB
EGAF00001883122 bam 6.1 GB
EGAF00001883123 bam 7.0 GB
EGAF00001883124 bam 7.8 GB
EGAF00001883125 bam 6.0 GB
EGAF00001883126 bam 6.2 GB
EGAF00001883127 bam 6.2 GB
EGAF00001883128 bam 7.2 GB
EGAF00001883129 bam 5.6 GB
EGAF00001883130 bam 6.4 GB
EGAF00001883131 bam 6.5 GB
EGAF00001883132 bam 6.2 GB
EGAF00001883133 bam 6.4 GB
EGAF00001883134 bam 6.3 GB
EGAF00001883135 bam 5.5 GB
EGAF00001883136 bam 5.5 GB
EGAF00001883137 bam 6.2 GB
EGAF00001883138 bam 4.1 GB
EGAF00001883139 bam 4.6 GB
EGAF00001883140 bam 4.7 GB
EGAF00001883141 bam 3.8 GB
EGAF00001883142 bam 4.1 GB
EGAF00001883143 bam 4.2 GB
EGAF00001883144 bam 4.1 GB
EGAF00001883145 bam 4.4 GB
EGAF00001883146 bam 4.3 GB
EGAF00001883147 bam 5.1 GB
EGAF00001883148 bam 3.7 GB
EGAF00001883149 bam 3.5 GB
EGAF00001883150 bam 3.8 GB
EGAF00001883151 bam 5.0 GB
EGAF00001883152 bam 3.4 GB
EGAF00001883153 bam 6.0 GB
EGAF00001883154 bam 3.7 GB
EGAF00001883155 bam 5.1 GB
EGAF00001883156 bam 3.9 GB
EGAF00001883157 bam 4.2 GB
EGAF00001883158 bam 4.3 GB
EGAF00001883159 bam 4.3 GB
EGAF00001883160 bam 4.1 GB
EGAF00001883161 bam 3.8 GB
EGAF00001883162 bam 3.9 GB
EGAF00001883163 bam 4.0 GB
EGAF00001883164 bam 4.1 GB
EGAF00001883165 bam 4.2 GB
EGAF00001883166 bam 4.1 GB
EGAF00001883167 bam 3.9 GB
EGAF00001883168 bam 3.3 GB
EGAF00001883169 bam 4.9 GB
EGAF00001883170 bam 3.4 GB
EGAF00001883171 bam 2.7 GB
EGAF00001883172 bam 3.3 GB
EGAF00001883173 bam 5.4 GB
EGAF00001883174 bam 5.2 GB
EGAF00001883175 bam 5.5 GB
EGAF00001883176 bam 4.4 GB
EGAF00001883177 bam 6.5 GB
EGAF00001883178 bam 7.8 GB
EGAF00001883179 bam 6.1 GB
EGAF00001883180 bam 8.2 GB
EGAF00001883181 bam 6.3 GB
EGAF00001883182 bam 6.0 GB
EGAF00001883183 bam 5.9 GB
EGAF00001883184 bam 7.3 GB
EGAF00001883185 bam 7.0 GB
EGAF00001883186 bam 6.8 GB
EGAF00001883187 bam 7.0 GB
161 Files (995.7 GB)