Dataset

Low-coverage Whole Genome Sequencing, Colorectal adenomas, NKI-AvL TGO series Stool-Proteomics

Dataset ID Technology Samples
EGAD00001004075 Illumina HiSeq 2000 103

Dataset Description

For this tissue dataset, we applied low-pass whole genome sequencing to 98 non-advanced and advanced adenomas. As small number of lesions was sequenced multiple times, this dataset consists of 103 fastq files. These adenomas were classified as lesions with low-risk or high-risk of progression, according to the presence of specific DNA copy number changes (Carvalho et al, CancerPrevRes, 2018).

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

NKI-AvL TGO DAC
Contact person: NKI-AvL TGO DAC
Email: dataaccesscommittee [dot] pathology [at] nki [dot] nl
More details: EGAC00001000760

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