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Anaplastic Thyroid Cancer aligned sequence data

Sequence data in fastq format was aligned to the GRCH38 reference genome. Aligned sequence was preprocessed with GATK for Indel Realignment and Base Quality Score Recalibration. Duplicates were marked with Picard Mark Duplicates. Aligned sequence is in bam format. Details of the alignment can be found int he bam header. In total, data generated from 174 tumour samples 102 matched blood normal controls was aligned. Tumour samples were classified as Anaplastic Thyroid, Poorly-differentiated or well-differentiated cancers.

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Data Access Agreement for the Nichols Group

Data will be available to qualified investigators upon request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002234 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002007909 bam 25.1 GB
EGAF00002007910 bam 11.9 GB
EGAF00002007911 bam 21.9 GB
EGAF00002007912 bam 14.4 GB
EGAF00002007913 bam 28.2 GB
EGAF00002007914 bam 16.6 GB
EGAF00002007915 bam 15.7 GB
EGAF00002007916 bam 13.6 GB
EGAF00002007917 bam 16.5 GB
EGAF00002007918 bam 14.7 GB
EGAF00002007919 bam 16.7 GB
EGAF00002007920 bam 15.9 GB
EGAF00002007921 bam 15.6 GB
EGAF00002007922 bam 19.3 GB
EGAF00002007923 bam 14.3 GB
EGAF00002007924 bam 17.0 GB
EGAF00002007925 bam 18.1 GB
EGAF00002007926 bam 12.3 GB
EGAF00002007927 bam 20.2 GB
EGAF00002007928 bam 22.8 GB
EGAF00002007929 bam 15.3 GB
EGAF00002007930 bam 15.7 GB
EGAF00002007931 bam 17.0 GB
EGAF00002007932 bam 19.3 GB
EGAF00002007933 bam 15.8 GB
EGAF00002007934 bam 16.5 GB
EGAF00002007935 bam 19.9 GB
EGAF00002007936 bam 18.5 GB
EGAF00002007937 bam 14.2 GB
EGAF00002007938 bam 16.5 GB
EGAF00002007939 bam 16.1 GB
EGAF00002007940 bam 15.5 GB
EGAF00002007941 bam 17.1 GB
EGAF00002007942 bam 15.3 GB
EGAF00002007943 bam 20.9 GB
EGAF00002007944 bam 17.1 GB
EGAF00002007945 bam 18.4 GB
EGAF00002007946 bam 15.1 GB
EGAF00002007947 bam 10.5 GB
EGAF00002007948 bam 10.1 GB
EGAF00002007949 bam 10.5 GB
EGAF00002007950 bam 12.9 GB
EGAF00002007951 bam 10.8 GB
EGAF00002007952 bam 11.0 GB
EGAF00002007953 bam 10.6 GB
EGAF00002007954 bam 13.3 GB
EGAF00002007955 bam 9.8 GB
EGAF00002007956 bam 12.4 GB
EGAF00002007957 bam 16.8 GB
EGAF00002007958 bam 16.0 GB
EGAF00002007959 bam 12.6 GB
EGAF00002007960 bam 12.6 GB
EGAF00002007961 bam 12.9 GB
EGAF00002007962 bam 13.6 GB
EGAF00002007963 bam 13.6 GB
EGAF00002007964 bam 12.7 GB
EGAF00002007965 bam 12.4 GB
EGAF00002007966 bam 12.7 GB
EGAF00002007967 bam 12.8 GB
EGAF00002007968 bam 13.2 GB
EGAF00002007969 bam 12.4 GB
EGAF00002007970 bam 13.6 GB
EGAF00002007971 bam 15.3 GB
EGAF00002007972 bam 15.5 GB
EGAF00002007973 bam 15.1 GB
EGAF00002007974 bam 14.6 GB
EGAF00002007975 bam 16.4 GB
EGAF00002007976 bam 13.7 GB
EGAF00002007977 bam 14.9 GB
EGAF00002007978 bam 14.1 GB
EGAF00002007979 bam 15.4 GB
EGAF00002007980 bam 12.8 GB
EGAF00002007981 bam 15.2 GB
EGAF00002007982 bam 11.6 GB
EGAF00002007983 bam 11.5 GB
EGAF00002007984 bam 12.2 GB
EGAF00002007985 bam 14.0 GB
EGAF00002007986 bam 14.0 GB
EGAF00002007987 bam 12.4 GB
EGAF00002007988 bam 13.7 GB
EGAF00002007989 bam 13.2 GB
EGAF00002007990 bam 13.4 GB
EGAF00002007991 bam 9.9 GB
EGAF00002007992 bam 4.4 GB
EGAF00002007993 bam 4.2 GB
EGAF00002007994 bam 7.8 GB
EGAF00002007995 bam 7.5 GB
EGAF00002007996 bam 12.5 GB
EGAF00002007997 bam 14.6 GB
EGAF00002007998 bam 8.6 GB
EGAF00002007999 bam 13.4 GB
EGAF00002008000 bam 8.5 GB
EGAF00002008001 bam 4.8 GB
EGAF00002008002 bam 17.0 GB
EGAF00002008003 bam 15.5 GB
EGAF00002008004 bam 13.6 GB
EGAF00002008005 bam 14.7 GB
EGAF00002008006 bam 13.9 GB
EGAF00002008007 bam 12.4 GB
EGAF00002008008 bam 12.2 GB
EGAF00002008009 bam 11.1 GB
EGAF00002008010 bam 11.8 GB
EGAF00002008011 bam 11.4 GB
EGAF00002008012 bam 13.2 GB
EGAF00002008013 bam 13.3 GB
EGAF00002008014 bam 12.8 GB
EGAF00002008015 bam 12.4 GB
EGAF00002008016 bam 14.8 GB
EGAF00002008017 bam 10.3 GB
EGAF00002008018 bam 15.3 GB
EGAF00002008019 bam 16.1 GB
EGAF00002008020 bam 17.7 GB
EGAF00002008021 bam 17.4 GB
EGAF00002008022 bam 23.1 GB
EGAF00002008023 bam 23.2 GB
EGAF00002008024 bam 21.2 GB
EGAF00002008025 bam 22.4 GB
EGAF00002008026 bam 23.2 GB
EGAF00002008027 bam 16.4 GB
EGAF00002008028 bam 17.3 GB
EGAF00002008029 bam 17.3 GB
EGAF00002008030 bam 20.0 GB
EGAF00002008031 bam 15.2 GB
EGAF00002008032 bam 13.6 GB
EGAF00002008033 bam 13.5 GB
EGAF00002008034 bam 14.1 GB
EGAF00002008035 bam 12.6 GB
EGAF00002008036 bam 12.7 GB
EGAF00002008037 bam 11.5 GB
EGAF00002008038 bam 13.6 GB
EGAF00002008039 bam 11.5 GB
EGAF00002008040 bam 14.2 GB
EGAF00002008041 bam 13.7 GB
EGAF00002008042 bam 12.0 GB
EGAF00002008043 bam 12.1 GB
EGAF00002008044 bam 12.3 GB
EGAF00002008045 bam 16.8 GB
EGAF00002008046 bam 17.0 GB
EGAF00002008047 bam 16.6 GB
EGAF00002008048 bam 17.2 GB
EGAF00002008049 bam 23.8 GB
EGAF00002008050 bam 21.4 GB
EGAF00002008051 bam 22.3 GB
EGAF00002008052 bam 18.7 GB
EGAF00002008053 bam 19.2 GB
EGAF00002008054 bam 17.4 GB
EGAF00002008055 bam 19.3 GB
EGAF00002008056 bam 15.9 GB
EGAF00002008057 bam 17.9 GB
EGAF00002008058 bam 17.2 GB
EGAF00002008059 bam 11.9 GB
EGAF00002008060 bam 15.3 GB
EGAF00002008061 bam 11.5 GB
EGAF00002008062 bam 17.0 GB
EGAF00002008063 bam 14.6 GB
EGAF00002008064 bam 15.1 GB
EGAF00002008065 bam 14.5 GB
EGAF00002008066 bam 13.8 GB
EGAF00002008067 bam 12.6 GB
EGAF00002008068 bam 15.9 GB
EGAF00002008069 bam 14.8 GB
EGAF00002008070 bam 14.2 GB
EGAF00002008071 bam 14.0 GB
EGAF00002008072 bam 13.1 GB
EGAF00002008073 bam 19.6 GB
EGAF00002008074 bam 19.6 GB
EGAF00002008075 bam 24.9 GB
EGAF00002008076 bam 18.4 GB
EGAF00002008077 bam 17.1 GB
EGAF00002008078 bam 20.8 GB
EGAF00002008079 bam 21.1 GB
EGAF00002008080 bam 22.5 GB
EGAF00002008081 bam 23.4 GB
EGAF00002008082 bam 19.0 GB
EGAF00002008083 bam 19.9 GB
EGAF00002008084 bam 36.6 GB
EGAF00002008085 bam 22.4 GB
EGAF00002008086 bam 10.1 GB
EGAF00002008087 bam 15.8 GB
EGAF00002008088 bam 15.2 GB
EGAF00002008089 bam 15.1 GB
EGAF00002008090 bam 12.8 GB
EGAF00002008091 bam 15.9 GB
EGAF00002008092 bam 14.3 GB
EGAF00002008093 bam 13.8 GB
EGAF00002008094 bam 13.6 GB
EGAF00002008095 bam 14.5 GB
EGAF00002008096 bam 14.9 GB
EGAF00002008097 bam 12.6 GB
EGAF00002008098 bam 12.7 GB
EGAF00002008099 bam 12.2 GB
EGAF00002008100 bam 12.0 GB
EGAF00002008101 bam 13.4 GB
EGAF00002008102 bam 17.5 GB
EGAF00002008103 bam 16.7 GB
EGAF00002008104 bam 16.4 GB
EGAF00002008105 bam 12.8 GB
EGAF00002008106 bam 14.5 GB
EGAF00002008107 bam 18.7 GB
EGAF00002008108 bam 17.0 GB
EGAF00002008109 bam 11.5 GB
EGAF00002008110 bam 18.4 GB
EGAF00002008111 bam 17.4 GB
EGAF00002008112 bam 20.4 GB
EGAF00002008113 bam 17.4 GB
EGAF00002008114 bam 10.2 GB
EGAF00002008115 bam 12.8 GB
EGAF00002008116 bam 12.2 GB
EGAF00002008117 bam 16.2 GB
EGAF00002008118 bam 15.2 GB
EGAF00002008119 bam 10.4 GB
EGAF00002008120 bam 9.8 GB
EGAF00002008121 bam 10.4 GB
EGAF00002008122 bam 10.1 GB
EGAF00002008123 bam 9.5 GB
EGAF00002008124 bam 10.6 GB
EGAF00002008125 bam 9.3 GB
EGAF00002008126 bam 33.7 GB
EGAF00002008127 bam 19.2 GB
EGAF00002008128 bam 35.6 GB
EGAF00002008129 bam 21.7 GB
EGAF00002008130 bam 40.5 GB
EGAF00002008131 bam 18.1 GB
EGAF00002008132 bam 36.4 GB
EGAF00002008133 bam 20.9 GB
EGAF00002008134 bam 29.2 GB
EGAF00002008135 bam 19.3 GB
EGAF00002008136 bam 33.1 GB
EGAF00002008137 bam 20.2 GB
EGAF00002008138 bam 34.6 GB
EGAF00002008139 bam 18.8 GB
EGAF00002008140 bam 38.9 GB
EGAF00002008141 bam 13.6 GB
EGAF00002008142 bam 36.5 GB
EGAF00002008143 bam 13.3 GB
EGAF00002008144 bam 41.2 GB
EGAF00002008145 bam 12.8 GB
EGAF00002008146 bam 54.7 GB
EGAF00002008147 bam 10.6 GB
EGAF00002008148 bam 33.0 GB
EGAF00002008149 bam 16.3 GB
EGAF00002008150 bam 35.4 GB
EGAF00002008151 bam 13.1 GB
EGAF00002008152 bam 46.8 GB
EGAF00002008153 bam 19.6 GB
EGAF00002008154 bam 48.1 GB
EGAF00002008155 bam 18.0 GB
EGAF00002008156 bam 41.7 GB
EGAF00002008157 bam 22.5 GB
EGAF00002008158 bam 45.5 GB
EGAF00002008159 bam 27.4 GB
EGAF00002008160 bam 35.2 GB
EGAF00002008161 bam 13.9 GB
EGAF00002008162 bam 30.4 GB
EGAF00002008163 bam 12.3 GB
EGAF00002008164 bam 49.2 GB
EGAF00002008165 bam 15.6 GB
EGAF00002008166 bam 41.9 GB
EGAF00002008167 bam 14.6 GB
EGAF00002008168 bam 19.0 GB
EGAF00002008169 bam 14.0 GB
EGAF00002008170 bam 19.8 GB
EGAF00002008171 bam 26.3 GB
EGAF00002008172 bam 17.1 GB
EGAF00002008173 bam 22.3 GB
EGAF00002008174 bam 14.3 GB
EGAF00002008175 bam 19.9 GB
EGAF00002008176 bam 11.5 GB
EGAF00002008177 bam 16.6 GB
EGAF00002008178 bam 21.5 GB
EGAF00002008179 bam 26.6 GB
EGAF00002008180 bam 32.0 GB
EGAF00002008181 bam 17.8 GB
EGAF00002008182 bam 27.9 GB
EGAF00002008183 bam 32.1 GB
275 Files (4.8 TB)