Variant Calling used in ABB project

Dataset ID Technology Samples
EGAD00001004132 N/A 1217

Dataset Description

This dataset has two Variants Files in VCF format used in ABB project (
One has the variants found in a Rare Variant Association Study performed in CLL patients. This has 1217 samples represented.
The other variant file has 209 SNPs predicted in 10 samples by GATK HaplotypeCaller and selected for Sanger Sequencing Validation.
Raw reads were aligned against the Human Reference genome (Hg19) with BWA mem and variants were obtained using GATK HaplotypeCaller.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

Contact person: Stephan Ossowski
Email: stephan [dot] ossowski [at] med [dot] uni-tuebingen [dot] de
More details: EGAC00001000916


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