About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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ICR639 CPG NGS Validation series

The dataset includes sequencing data generated using the TruSight Cancer Panel (TSCP) a targeted NGS assay for analysis of CPGs and orthogonally generated data supporting at least one pathogenic variant in a CPG for a total of 645 pathogenic CPG variants. The set of pathogenic CPG variants includes strong representation of some of the most challenging types of pathogenic variants, with 339 indels, including 16 complex indels and 24 insertions or deletions with length greater than 5bp, and 74 exon CNVs, including 23 single exon CNVs. There are 502 pathogenic variants in BRCA1 or BRCA2, making this an important first-line validation dataset for laboratories performing NGS testing of BRCA1 and BRCA2.

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Accessing ICR-GSR data archived in EGA

ICR - Genetic Susceptibility Research (ICR-GSR)Data Access CommitteeAccession number: EGAC00001000235Details of the ICR-GSR Data Access Committee are available for each of the datasets accessible via www.icr.ac.uk/genetic-resourcesAlternatively, please email rahmanlab@icr.ac.uk, giving the above Accession number in the subject line, to request an Application Form for access. This should be completed and and returned to rahmanlab@icr.ac.uk. Applications will only be accepted electronically. Any queries regarding access procedures or completion of the forms should be sent to this email address. Once access has been approved, an agreement will need to be completed. A signed hard copy of the agreement should e-mailed, faxed or posted to: Professor Nazneen Rahman The Institute of Cancer Research, London Division of Genetics & Epidemiology 15 Cotswold Road Sutton SM2 5NG UNITED KINGDOMEmail: rahmanlab@icr.ac.uk Fax: =44(0)20 8722 4359

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002993 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00002013941 fastq.gz 313.9 MB Report
EGAF00002013942 fastq.gz 321.9 MB Report
EGAF00002013943 fastq.gz 320.0 MB Report
EGAF00002013944 fastq.gz 356.7 MB Report
EGAF00002013945 fastq.gz 260.5 MB Report
EGAF00002013946 fastq.gz 285.2 MB Report
EGAF00002013947 fastq.gz 378.0 MB Report
EGAF00002013948 fastq.gz 386.5 MB Report
EGAF00002013949 fastq.gz 516.1 MB Report
EGAF00002013950 fastq.gz 505.9 MB Report
EGAF00002013951 fastq.gz 183.4 MB Report
EGAF00002013952 fastq.gz 188.6 MB Report
EGAF00002013953 fastq.gz 396.4 MB Report
EGAF00002013954 fastq.gz 409.6 MB Report
EGAF00002013955 fastq.gz 335.8 MB Report
EGAF00002013956 fastq.gz 345.3 MB Report
EGAF00002013957 fastq.gz 257.6 MB Report
EGAF00002013958 fastq.gz 263.9 MB Report
EGAF00002013959 fastq.gz 279.9 MB Report
EGAF00002013960 fastq.gz 296.7 MB Report
EGAF00002013961 fastq.gz 366.5 MB Report
EGAF00002013962 fastq.gz 382.6 MB Report
EGAF00002013963 fastq.gz 264.3 MB Report
EGAF00002013964 fastq.gz 276.4 MB Report
EGAF00002013965 fastq.gz 272.4 MB Report
EGAF00002013966 fastq.gz 280.3 MB Report
EGAF00002013967 fastq.gz 335.4 MB Report
EGAF00002013968 fastq.gz 344.4 MB Report
EGAF00002013969 fastq.gz 320.9 MB Report
EGAF00002013970 fastq.gz 351.5 MB Report
EGAF00002013971 fastq.gz 472.5 MB Report
EGAF00002013972 fastq.gz 462.9 MB Report
EGAF00002013973 fastq.gz 267.5 MB Report
EGAF00002013974 fastq.gz 267.7 MB Report
EGAF00002013975 fastq.gz 318.5 MB Report
EGAF00002013976 fastq.gz 316.4 MB Report
EGAF00002013977 fastq.gz 282.3 MB Report
EGAF00002013978 fastq.gz 289.9 MB Report
EGAF00002013979 fastq.gz 352.8 MB Report
EGAF00002013980 fastq.gz 356.7 MB Report
EGAF00002013981 fastq.gz 350.8 MB Report
EGAF00002013982 fastq.gz 386.3 MB Report
EGAF00002013983 fastq.gz 317.5 MB Report
EGAF00002013984 fastq.gz 323.2 MB Report
EGAF00002013985 fastq.gz 266.4 MB Report
EGAF00002013986 fastq.gz 272.5 MB Report
EGAF00002013987 fastq.gz 338.3 MB Report
EGAF00002013988 fastq.gz 350.0 MB Report
EGAF00002013989 fastq.gz 314.5 MB Report
EGAF00002013990 fastq.gz 320.6 MB Report
EGAF00002013991 fastq.gz 326.9 MB Report
EGAF00002013992 fastq.gz 345.3 MB Report
EGAF00002013993 fastq.gz 209.9 MB Report
EGAF00002013994 fastq.gz 212.8 MB Report
EGAF00002013995 fastq.gz 304.2 MB Report
EGAF00002013996 fastq.gz 310.3 MB Report
EGAF00002013997 fastq.gz 279.6 MB Report
EGAF00002013998 fastq.gz 299.7 MB Report
EGAF00002013999 fastq.gz 130.4 MB Report
EGAF00002014000 fastq.gz 132.2 MB Report
EGAF00002014001 fastq.gz 524.5 MB Report
EGAF00002014002 fastq.gz 537.3 MB Report
EGAF00002014003 fastq.gz 253.1 MB Report
EGAF00002014004 fastq.gz 257.5 MB Report
EGAF00002014005 fastq.gz 387.0 MB Report
EGAF00002014006 fastq.gz 432.9 MB Report
EGAF00002014007 fastq.gz 332.1 MB Report
EGAF00002014008 fastq.gz 364.3 MB Report
EGAF00002014009 fastq.gz 401.6 MB Report
EGAF00002014010 fastq.gz 441.7 MB Report
EGAF00002014011 fastq.gz 319.3 MB Report
EGAF00002014012 fastq.gz 333.2 MB Report
EGAF00002014013 fastq.gz 539.7 MB Report
EGAF00002014014 fastq.gz 594.3 MB Report
EGAF00002014015 fastq.gz 386.1 MB Report
EGAF00002014016 fastq.gz 424.2 MB Report
EGAF00002014017 fastq.gz 325.2 MB Report
EGAF00002014018 fastq.gz 360.8 MB Report
EGAF00002014019 fastq.gz 314.6 MB Report
EGAF00002014020 fastq.gz 343.6 MB Report
EGAF00002014021 fastq.gz 346.1 MB Report
EGAF00002014022 fastq.gz 379.7 MB Report
EGAF00002014023 fastq.gz 471.7 MB Report
EGAF00002014024 fastq.gz 521.3 MB Report
EGAF00002014025 fastq.gz 269.6 MB Report
EGAF00002014026 fastq.gz 272.9 MB Report
EGAF00002014027 fastq.gz 358.7 MB Report
EGAF00002014028 fastq.gz 370.0 MB Report
EGAF00002014029 fastq.gz 244.6 MB Report
EGAF00002014030 fastq.gz 241.3 MB Report
EGAF00002014031 fastq.gz 263.7 MB Report
EGAF00002014032 fastq.gz 273.5 MB Report
EGAF00002014033 fastq.gz 375.6 MB Report
EGAF00002014034 fastq.gz 375.4 MB Report
EGAF00002014035 fastq.gz 306.2 MB Report
EGAF00002014036 fastq.gz 315.2 MB Report
EGAF00002014037 fastq.gz 235.3 MB Report
EGAF00002014038 fastq.gz 244.4 MB Report
EGAF00002014039 fastq.gz 376.6 MB Report
EGAF00002014040 fastq.gz 384.5 MB Report
EGAF00002014041 fastq.gz 310.6 MB Report
EGAF00002014042 fastq.gz 320.0 MB Report
EGAF00002014043 fastq.gz 169.2 MB Report
EGAF00002014044 fastq.gz 173.0 MB Report
EGAF00002014045 fastq.gz 311.0 MB Report
EGAF00002014046 fastq.gz 330.0 MB Report
EGAF00002014047 fastq.gz 216.8 MB Report
EGAF00002014048 fastq.gz 219.9 MB Report
EGAF00002014049 fastq.gz 227.0 MB Report
EGAF00002014050 fastq.gz 244.4 MB Report
EGAF00002014051 fastq.gz 233.3 MB Report
EGAF00002014052 fastq.gz 247.3 MB Report
EGAF00002014053 fastq.gz 341.4 MB Report
EGAF00002014054 fastq.gz 350.6 MB Report
EGAF00002014055 fastq.gz 427.5 MB Report
EGAF00002014056 fastq.gz 458.6 MB Report
EGAF00002014057 fastq.gz 323.4 MB Report
EGAF00002014058 fastq.gz 331.5 MB Report
EGAF00002014059 fastq.gz 341.3 MB Report
EGAF00002014060 fastq.gz 350.1 MB Report
EGAF00002014061 fastq.gz 481.3 MB Report
EGAF00002014062 fastq.gz 485.4 MB Report
EGAF00002014063 fastq.gz 320.0 MB Report
EGAF00002014064 fastq.gz 321.3 MB Report
EGAF00002014065 fastq.gz 372.7 MB Report
EGAF00002014066 fastq.gz 377.7 MB Report
EGAF00002014067 fastq.gz 341.8 MB Report
EGAF00002014068 fastq.gz 351.0 MB Report
EGAF00002014069 fastq.gz 761.5 MB Report
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EGAF00002014071 fastq.gz 295.4 MB Report
EGAF00002014072 fastq.gz 305.7 MB Report
EGAF00002014073 fastq.gz 343.1 MB Report
EGAF00002014074 fastq.gz 347.8 MB Report
EGAF00002014075 fastq.gz 458.4 MB Report
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EGAF00002014080 fastq.gz 308.7 MB Report
EGAF00002014081 fastq.gz 324.4 MB Report
EGAF00002014082 fastq.gz 358.5 MB Report
EGAF00002014083 fastq.gz 409.2 MB Report
EGAF00002014084 fastq.gz 450.3 MB Report
EGAF00002014085 fastq.gz 413.8 MB Report
EGAF00002014086 fastq.gz 417.6 MB Report
EGAF00002014087 fastq.gz 240.6 MB Report
EGAF00002014088 fastq.gz 242.6 MB Report
EGAF00002014089 fastq.gz 322.6 MB Report
EGAF00002014090 fastq.gz 370.5 MB Report
EGAF00002014091 fastq.gz 358.0 MB Report
EGAF00002014092 fastq.gz 392.5 MB Report
EGAF00002014093 fastq.gz 286.1 MB Report
EGAF00002014094 fastq.gz 318.8 MB Report
EGAF00002014095 fastq.gz 411.8 MB Report
EGAF00002014096 fastq.gz 454.7 MB Report
EGAF00002014097 fastq.gz 367.8 MB Report
EGAF00002014098 fastq.gz 404.2 MB Report
EGAF00002014099 fastq.gz 337.4 MB Report
EGAF00002014100 fastq.gz 368.6 MB Report
EGAF00002014101 fastq.gz 365.7 MB Report
EGAF00002014102 fastq.gz 374.1 MB Report
EGAF00002014103 fastq.gz 306.0 MB Report
EGAF00002014104 fastq.gz 316.1 MB Report
EGAF00002014105 fastq.gz 273.2 MB Report
EGAF00002014106 fastq.gz 277.2 MB Report
EGAF00002014107 fastq.gz 317.9 MB Report
EGAF00002014108 fastq.gz 323.1 MB Report
EGAF00002014109 fastq.gz 494.2 MB Report
EGAF00002014110 fastq.gz 502.0 MB Report
EGAF00002014111 fastq.gz 288.2 MB Report
EGAF00002014112 fastq.gz 298.0 MB Report
EGAF00002014113 fastq.gz 373.4 MB Report
EGAF00002014114 fastq.gz 383.8 MB Report
EGAF00002014115 fastq.gz 266.4 MB Report
EGAF00002014116 fastq.gz 292.2 MB Report
EGAF00002014117 fastq.gz 311.2 MB Report
EGAF00002014118 fastq.gz 341.0 MB Report
EGAF00002014119 fastq.gz 270.1 MB Report
EGAF00002014120 fastq.gz 296.8 MB Report
EGAF00002014121 fastq.gz 348.4 MB Report
EGAF00002014122 fastq.gz 381.9 MB Report
EGAF00002014123 fastq.gz 327.2 MB Report
EGAF00002014124 fastq.gz 355.5 MB Report
EGAF00002014125 fastq.gz 369.0 MB Report
EGAF00002014126 fastq.gz 404.5 MB Report
EGAF00002014127 fastq.gz 287.5 MB Report
EGAF00002014128 fastq.gz 313.1 MB Report
EGAF00002014129 fastq.gz 261.8 MB Report
EGAF00002014130 fastq.gz 289.5 MB Report
EGAF00002014131 fastq.gz 290.9 MB Report
EGAF00002014132 fastq.gz 318.8 MB Report
EGAF00002014133 fastq.gz 498.3 MB Report
EGAF00002014134 fastq.gz 481.6 MB Report
EGAF00002014135 fastq.gz 235.4 MB Report
EGAF00002014136 fastq.gz 240.8 MB Report
EGAF00002014137 fastq.gz 367.3 MB Report
EGAF00002014138 fastq.gz 404.2 MB Report
EGAF00002014139 fastq.gz 362.6 MB Report
EGAF00002014140 fastq.gz 370.8 MB Report
EGAF00002014141 fastq.gz 372.3 MB Report
EGAF00002014142 fastq.gz 378.3 MB Report
EGAF00002014143 fastq.gz 404.4 MB Report
EGAF00002014144 fastq.gz 414.0 MB Report
EGAF00002014145 fastq.gz 360.0 MB Report
EGAF00002014146 fastq.gz 365.6 MB Report
EGAF00002014147 fastq.gz 349.1 MB Report
EGAF00002014148 fastq.gz 348.5 MB Report
EGAF00002014149 fastq.gz 326.1 MB Report
EGAF00002014150 fastq.gz 341.6 MB Report
EGAF00002014151 fastq.gz 290.3 MB Report
EGAF00002014152 fastq.gz 293.7 MB Report
EGAF00002014153 fastq.gz 316.8 MB Report
EGAF00002014154 fastq.gz 327.2 MB Report
EGAF00002014155 fastq.gz 270.5 MB Report
EGAF00002014156 fastq.gz 279.7 MB Report
EGAF00002014157 fastq.gz 265.0 MB Report
EGAF00002014158 fastq.gz 267.0 MB Report
EGAF00002014159 fastq.gz 307.9 MB Report
EGAF00002014160 fastq.gz 313.5 MB Report
EGAF00002014161 fastq.gz 329.9 MB Report
EGAF00002014162 fastq.gz 337.0 MB Report
EGAF00002014163 fastq.gz 236.3 MB Report
EGAF00002014164 fastq.gz 238.9 MB Report
EGAF00002014165 fastq.gz 373.2 MB Report
EGAF00002014166 fastq.gz 384.0 MB Report
EGAF00002014167 fastq.gz 376.5 MB Report
EGAF00002014168 fastq.gz 387.0 MB Report
EGAF00002014169 fastq.gz 247.3 MB Report
EGAF00002014170 fastq.gz 257.9 MB Report
EGAF00002014171 fastq.gz 273.6 MB Report
EGAF00002014172 fastq.gz 279.0 MB Report
EGAF00002014173 fastq.gz 260.4 MB Report
EGAF00002014174 fastq.gz 262.2 MB Report
EGAF00002014175 fastq.gz 275.9 MB Report
EGAF00002014176 fastq.gz 283.4 MB Report
EGAF00002014177 fastq.gz 311.9 MB Report
EGAF00002014178 fastq.gz 325.9 MB Report
EGAF00002014179 fastq.gz 304.8 MB Report
EGAF00002014180 fastq.gz 310.4 MB Report
EGAF00002014181 fastq.gz 378.2 MB Report
EGAF00002014182 fastq.gz 384.5 MB Report
EGAF00002014183 fastq.gz 261.4 MB Report
EGAF00002014184 fastq.gz 267.8 MB Report
EGAF00002014185 fastq.gz 343.0 MB Report
EGAF00002014186 fastq.gz 363.5 MB Report
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EGAF00002014188 fastq.gz 292.4 MB Report
EGAF00002014189 fastq.gz 201.8 MB Report
EGAF00002014190 fastq.gz 205.9 MB Report
EGAF00002014191 fastq.gz 285.3 MB Report
EGAF00002014192 fastq.gz 288.6 MB Report
EGAF00002014193 fastq.gz 267.0 MB Report
EGAF00002014194 fastq.gz 274.3 MB Report
EGAF00002014195 fastq.gz 299.7 MB Report
EGAF00002014196 fastq.gz 308.8 MB Report
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EGAF00002014198 fastq.gz 324.2 MB Report
EGAF00002014199 fastq.gz 278.5 MB Report
EGAF00002014200 fastq.gz 287.8 MB Report
EGAF00002014201 fastq.gz 305.4 MB Report
EGAF00002014202 fastq.gz 309.6 MB Report
EGAF00002014203 fastq.gz 255.4 MB Report
EGAF00002014204 fastq.gz 258.5 MB Report
EGAF00002014205 fastq.gz 345.6 MB Report
EGAF00002014206 fastq.gz 350.7 MB Report
EGAF00002014207 fastq.gz 641.4 MB Report
EGAF00002014208 fastq.gz 666.8 MB Report
EGAF00002014209 fastq.gz 277.3 MB Report
EGAF00002014210 fastq.gz 297.7 MB Report
EGAF00002014211 fastq.gz 265.1 MB Report
EGAF00002014212 fastq.gz 269.9 MB Report
EGAF00002014213 fastq.gz 439.2 MB Report
EGAF00002014214 fastq.gz 452.6 MB Report
EGAF00002014215 fastq.gz 324.8 MB Report
EGAF00002014216 fastq.gz 314.9 MB Report
EGAF00002014217 fastq.gz 548.8 MB Report
EGAF00002014218 fastq.gz 555.8 MB Report
EGAF00002014219 fastq.gz 228.9 MB Report
EGAF00002014220 fastq.gz 233.7 MB Report
EGAF00002014221 fastq.gz 218.9 MB Report
EGAF00002014222 fastq.gz 225.4 MB Report
EGAF00002014223 fastq.gz 214.1 MB Report
EGAF00002014224 fastq.gz 228.0 MB Report
EGAF00002014225 fastq.gz 321.6 MB Report
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EGAF00002014227 fastq.gz 292.5 MB Report
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EGAF00002014234 fastq.gz 322.5 MB Report
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EGAF00002014238 fastq.gz 222.6 MB Report
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EGAF00002014282 fastq.gz 378.4 MB Report
EGAF00002014283 fastq.gz 342.2 MB Report
EGAF00002014284 fastq.gz 352.4 MB Report
EGAF00002014285 fastq.gz 266.2 MB Report
EGAF00002014286 fastq.gz 269.5 MB Report
EGAF00002014287 fastq.gz 286.4 MB Report
EGAF00002014288 fastq.gz 299.1 MB Report
EGAF00002014289 fastq.gz 385.8 MB Report
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EGAF00002014304 fastq.gz 353.9 MB Report
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EGAF00002014307 fastq.gz 238.6 MB Report
EGAF00002014308 fastq.gz 243.2 MB Report
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EGAF00002014313 fastq.gz 325.5 MB Report
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EGAF00002014315 fastq.gz 331.3 MB Report
EGAF00002014316 fastq.gz 329.3 MB Report
EGAF00002014317 fastq.gz 268.1 MB Report
EGAF00002014318 fastq.gz 278.4 MB Report
EGAF00002014319 fastq.gz 300.4 MB Report
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EGAF00002014327 fastq.gz 388.4 MB Report
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EGAF00002014329 fastq.gz 326.3 MB Report
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EGAF00002014335 fastq.gz 348.4 MB Report
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EGAF00002014337 fastq.gz 292.4 MB Report
EGAF00002014338 fastq.gz 303.4 MB Report
EGAF00002014339 fastq.gz 454.8 MB Report
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EGAF00002014342 fastq.gz 313.5 MB Report
EGAF00002014343 fastq.gz 283.1 MB Report
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EGAF00002014345 fastq.gz 379.2 MB Report
EGAF00002014346 fastq.gz 382.1 MB Report
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EGAF00002014348 fastq.gz 469.4 MB Report
EGAF00002014349 fastq.gz 310.9 MB Report
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EGAF00002014352 fastq.gz 481.5 MB Report
EGAF00002014353 fastq.gz 362.8 MB Report
EGAF00002014354 fastq.gz 373.7 MB Report
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EGAF00002014356 fastq.gz 291.3 MB Report
EGAF00002014357 fastq.gz 277.1 MB Report
EGAF00002014358 fastq.gz 283.6 MB Report
EGAF00002014359 fastq.gz 365.2 MB Report
EGAF00002014360 fastq.gz 395.7 MB Report
EGAF00002014361 fastq.gz 287.0 MB Report
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EGAF00002014363 fastq.gz 330.1 MB Report
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EGAF00002014365 fastq.gz 326.2 MB Report
EGAF00002014366 fastq.gz 332.2 MB Report
EGAF00002014367 fastq.gz 327.9 MB Report
EGAF00002014368 fastq.gz 335.1 MB Report
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EGAF00002014370 fastq.gz 183.7 MB Report
EGAF00002014371 fastq.gz 309.3 MB Report
EGAF00002014372 fastq.gz 312.9 MB Report
EGAF00002014373 fastq.gz 190.8 MB Report
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EGAF00002212413 vcf 611.5 kB
1917 Files (423.7 GB)