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Whole Exome Sequencing of Diffuse Glioma Samples

This dataset contains FASTQ files obtained through whole exome sequencing of glioma and matched blood samples.

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Acibadem Mehmet Ali Aydinlar University Brain Tumor Research Group Data Accession Policy

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom AUBTRG grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: AUBTRG and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. AUBTRG: Acibadem Mehmet Ali Aydinlar University – Brain Tumour Research Group 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify AUBTRG within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify AUBTRG prior to any significant changes to the protocol for the Project. 14. The User Institution will notify AUBTRG as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. AUBTRG may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Koray Ozduman. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Turkey and shall be subject to the exclusive jurisdiction of the Turkish courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003035 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002018640 fastq.gz 3.7 GB
EGAF00002018641 fastq.gz 3.8 GB
EGAF00002018642 fastq.gz 8.2 GB
EGAF00002018643 fastq.gz 7.9 GB
EGAF00002018644 fastq.gz 4.7 GB
EGAF00002018645 fastq.gz 4.7 GB
EGAF00002018646 fastq.gz 8.3 GB
EGAF00002018647 fastq.gz 9.1 GB
EGAF00002018648 fastq.gz 2.0 GB
EGAF00002018649 fastq.gz 2.1 GB
EGAF00002018650 fastq.gz 2.0 GB
EGAF00002018651 fastq.gz 2.1 GB
EGAF00002018652 fastq.gz 5.3 GB
EGAF00002018653 fastq.gz 5.5 GB
EGAF00002018654 fastq.gz 5.3 GB
EGAF00002018655 fastq.gz 5.5 GB
EGAF00002018656 fastq.gz 4.6 GB
EGAF00002018657 fastq.gz 4.7 GB
EGAF00002018658 fastq.gz 8.4 GB
EGAF00002018659 fastq.gz 8.7 GB
EGAF00002018660 fastq.gz 4.1 GB
EGAF00002018661 fastq.gz 4.2 GB
EGAF00002018662 fastq.gz 8.5 GB
EGAF00002018663 fastq.gz 8.6 GB
EGAF00002018664 fastq.gz 4.1 GB
EGAF00002018665 fastq.gz 4.1 GB
EGAF00002018666 fastq.gz 7.5 GB
EGAF00002018667 fastq.gz 7.8 GB
EGAF00002018668 fastq.gz 4.5 GB
EGAF00002018669 fastq.gz 4.6 GB
EGAF00002018670 fastq.gz 3.6 GB
EGAF00002018671 fastq.gz 3.8 GB
EGAF00002018672 fastq.gz 2.4 GB
EGAF00002018673 fastq.gz 2.2 GB
EGAF00002018674 fastq.gz 1.1 GB
EGAF00002018675 fastq.gz 1.3 GB
EGAF00002018676 fastq.gz 2.9 GB
EGAF00002018677 fastq.gz 2.9 GB
EGAF00002018678 fastq.gz 7.2 GB
EGAF00002018679 fastq.gz 7.3 GB
EGAF00002018680 fastq.gz 3.0 GB
EGAF00002018681 fastq.gz 3.0 GB
EGAF00002018682 fastq.gz 5.6 GB
EGAF00002018683 fastq.gz 5.7 GB
EGAF00002018684 fastq.gz 4.3 GB
EGAF00002018685 fastq.gz 4.2 GB
EGAF00002018686 fastq.gz 974.6 MB
EGAF00002018687 fastq.gz 1.2 GB
EGAF00002018688 fastq.gz 4.6 GB
EGAF00002018689 fastq.gz 4.5 GB
EGAF00002018690 fastq.gz 1.8 GB
EGAF00002018691 fastq.gz 1.8 GB
EGAF00002018692 fastq.gz 1.8 GB
EGAF00002018693 fastq.gz 1.9 GB
EGAF00002018694 fastq.gz 7.9 GB
EGAF00002018695 fastq.gz 8.4 GB
EGAF00002018696 fastq.gz 4.3 GB
EGAF00002018697 fastq.gz 4.4 GB
EGAF00002018698 fastq.gz 5.5 GB
EGAF00002018699 fastq.gz 6.0 GB
EGAF00002018700 fastq.gz 4.4 GB
EGAF00002018701 fastq.gz 4.6 GB
EGAF00002018702 fastq.gz 5.3 GB
EGAF00002018703 fastq.gz 5.7 GB
EGAF00002018704 fastq.gz 4.5 GB
EGAF00002018705 fastq.gz 5.0 GB
EGAF00002018706 fastq.gz 2.2 GB
EGAF00002018707 fastq.gz 2.4 GB
EGAF00002018708 fastq.gz 2.0 GB
EGAF00002018709 fastq.gz 2.1 GB
EGAF00002018710 fastq.gz 1.0 GB
EGAF00002018711 fastq.gz 1.1 GB
EGAF00002018712 fastq.gz 1.9 GB
EGAF00002018713 fastq.gz 2.0 GB
EGAF00002018714 fastq.gz 2.6 GB
EGAF00002018715 fastq.gz 2.9 GB
EGAF00002018716 fastq.gz 5.4 GB
EGAF00002018717 fastq.gz 5.9 GB
EGAF00002018718 fastq.gz 7.1 GB
EGAF00002018719 fastq.gz 7.9 GB
EGAF00002018720 fastq.gz 4.5 GB
EGAF00002018721 fastq.gz 4.8 GB
EGAF00002018722 fastq.gz 2.0 GB
EGAF00002018723 fastq.gz 2.4 GB
EGAF00002018724 fastq.gz 3.4 GB
EGAF00002018725 fastq.gz 4.0 GB
EGAF00002018726 fastq.gz 2.2 GB
EGAF00002018727 fastq.gz 2.6 GB
EGAF00002018728 fastq.gz 5.0 GB
EGAF00002018729 fastq.gz 5.8 GB
EGAF00002018730 fastq.gz 2.6 GB
EGAF00002018731 fastq.gz 3.1 GB
EGAF00002018732 fastq.gz 5.0 GB
EGAF00002018733 fastq.gz 6.0 GB
EGAF00002018734 fastq.gz 2.7 GB
EGAF00002018735 fastq.gz 3.2 GB
EGAF00002018736 fastq.gz 5.6 GB
EGAF00002018737 fastq.gz 6.7 GB
EGAF00002018738 fastq.gz 6.5 GB
EGAF00002018739 fastq.gz 7.6 GB
EGAF00002018740 fastq.gz 4.9 GB
EGAF00002018741 fastq.gz 5.7 GB
EGAF00002018742 fastq.gz 5.3 GB
EGAF00002018743 fastq.gz 6.1 GB
EGAF00002018744 fastq.gz 6.6 GB
EGAF00002018745 fastq.gz 7.5 GB
EGAF00002018746 fastq.gz 3.5 GB
EGAF00002018747 fastq.gz 4.1 GB
EGAF00002018748 fastq.gz 5.6 GB
EGAF00002018749 fastq.gz 6.4 GB
EGAF00002018750 fastq.gz 3.1 GB
EGAF00002018751 fastq.gz 3.6 GB
EGAF00002018752 fastq.gz 7.1 GB
EGAF00002018753 fastq.gz 8.2 GB
EGAF00003674305 fastq.gz 4.5 GB
EGAF00003674306 fastq.gz 4.6 GB
EGAF00003674307 fastq.gz 4.5 GB
EGAF00003674308 fastq.gz 4.6 GB
EGAF00003674313 fastq.gz 2.5 GB
EGAF00003674314 fastq.gz 2.8 GB
EGAF00003674315 fastq.gz 3.4 GB
EGAF00003674316 fastq.gz 3.8 GB
EGAF00003674319 fastq.gz 6.3 GB
EGAF00003674320 fastq.gz 7.1 GB
EGAF00003674321 fastq.gz 3.1 GB
EGAF00003674322 fastq.gz 3.6 GB
EGAF00003674363 fastq.gz 3.2 GB
EGAF00003674364 fastq.gz 3.8 GB
EGAF00003674365 fastq.gz 3.5 GB
EGAF00003674366 fastq.gz 3.8 GB
EGAF00003674367 fastq.gz 1.5 GB
EGAF00003674368 fastq.gz 1.6 GB
EGAF00003674371 fastq.gz 2.6 GB
EGAF00003674372 fastq.gz 3.1 GB
EGAF00003676171 fastq.gz 4.7 GB
EGAF00003676172 fastq.gz 5.2 GB
EGAF00003676173 fastq.gz 3.6 GB
EGAF00003676174 fastq.gz 3.8 GB
EGAF00003676175 fastq.gz 6.3 GB
EGAF00003676176 fastq.gz 6.6 GB
EGAF00003676177 fastq.gz 2.7 GB
EGAF00003676178 fastq.gz 3.0 GB
EGAF00003676179 fastq.gz 4.6 GB
EGAF00003676180 fastq.gz 5.2 GB
EGAF00003676181 fastq.gz 4.0 GB
EGAF00003676182 fastq.gz 4.4 GB
EGAF00003676183 fastq.gz 5.3 GB
EGAF00003676184 fastq.gz 5.8 GB
EGAF00003676185 fastq.gz 3.1 GB
EGAF00003676186 fastq.gz 3.5 GB
EGAF00003676187 fastq.gz 4.3 GB
EGAF00003676188 fastq.gz 4.9 GB
EGAF00003676189 fastq.gz 7.4 GB
EGAF00003676190 fastq.gz 8.2 GB
EGAF00003676191 fastq.gz 3.0 GB
EGAF00003676192 fastq.gz 3.5 GB
EGAF00003676193 fastq.gz 5.2 GB
EGAF00003676194 fastq.gz 6.0 GB
EGAF00003676195 fastq.gz 3.0 GB
EGAF00003676196 fastq.gz 3.5 GB
EGAF00003676197 fastq.gz 3.7 GB
EGAF00003676198 fastq.gz 4.1 GB
EGAF00003676199 fastq.gz 2.4 GB
EGAF00003676200 fastq.gz 2.5 GB
EGAF00003676201 fastq.gz 5.8 GB
EGAF00003676202 fastq.gz 6.0 GB
EGAF00003676203 fastq.gz 2.5 GB
EGAF00003676204 fastq.gz 2.7 GB
EGAF00003676205 fastq.gz 5.7 GB
EGAF00003676206 fastq.gz 5.9 GB
EGAF00003676207 fastq.gz 2.9 GB
EGAF00003676208 fastq.gz 3.0 GB
EGAF00003676209 fastq.gz 5.3 GB
EGAF00003676210 fastq.gz 5.6 GB
EGAF00003676211 fastq.gz 7.7 GB
EGAF00003676212 fastq.gz 8.0 GB
EGAF00003676213 fastq.gz 2.8 GB
EGAF00003676214 fastq.gz 2.9 GB
EGAF00003676215 fastq.gz 6.1 GB
EGAF00003676216 fastq.gz 6.2 GB
EGAF00003676217 fastq.gz 3.4 GB
EGAF00003676218 fastq.gz 3.5 GB
EGAF00003676219 fastq.gz 8.0 GB
EGAF00003676220 fastq.gz 8.1 GB
EGAF00003676221 fastq.gz 4.3 GB
EGAF00003676222 fastq.gz 4.5 GB
EGAF00003676223 fastq.gz 8.3 GB
EGAF00003676224 fastq.gz 8.5 GB
EGAF00003676225 fastq.gz 4.5 GB
EGAF00003676226 fastq.gz 4.7 GB
EGAF00003676227 fastq.gz 7.8 GB
EGAF00003676228 fastq.gz 8.0 GB
EGAF00003676229 fastq.gz 4.9 GB
EGAF00003676230 fastq.gz 5.0 GB
EGAF00003676231 fastq.gz 5.7 GB
EGAF00003676232 fastq.gz 5.7 GB
EGAF00003676233 fastq.gz 2.6 GB
EGAF00003676234 fastq.gz 2.7 GB
EGAF00003676235 fastq.gz 5.5 GB
EGAF00003676236 fastq.gz 5.7 GB
EGAF00003676237 fastq.gz 5.5 GB
EGAF00003676238 fastq.gz 5.5 GB
EGAF00003676239 fastq.gz 2.8 GB
EGAF00003676240 fastq.gz 2.9 GB
EGAF00003676241 fastq.gz 5.7 GB
EGAF00003676242 fastq.gz 5.9 GB
EGAF00003676243 fastq.gz 3.7 GB
EGAF00003676244 fastq.gz 3.9 GB
EGAF00003676245 fastq.gz 5.2 GB
EGAF00003676246 fastq.gz 5.3 GB
EGAF00003676247 fastq.gz 7.2 GB
EGAF00003676248 fastq.gz 7.3 GB
EGAF00003676249 fastq.gz 3.8 GB
EGAF00003676250 fastq.gz 3.9 GB
EGAF00003676251 fastq.gz 6.7 GB
EGAF00003676252 fastq.gz 7.0 GB
EGAF00003676253 fastq.gz 3.7 GB
EGAF00003676254 fastq.gz 3.8 GB
EGAF00003676255 fastq.gz 7.1 GB
EGAF00003676256 fastq.gz 7.3 GB
EGAF00003676257 fastq.gz 6.9 GB
EGAF00003676258 fastq.gz 7.1 GB
EGAF00003676259 fastq.gz 3.6 GB
EGAF00003676260 fastq.gz 3.7 GB
EGAF00003676261 fastq.gz 6.4 GB
EGAF00003676262 fastq.gz 6.7 GB
EGAF00003676263 fastq.gz 2.4 GB
EGAF00003676264 fastq.gz 2.4 GB
EGAF00003676265 fastq.gz 419.8 MB
EGAF00003676266 fastq.gz 428.0 MB
EGAF00003676267 fastq.gz 3.3 GB
EGAF00003676268 fastq.gz 3.4 GB
EGAF00003676269 fastq.gz 591.2 MB
EGAF00003676270 fastq.gz 610.9 MB
234 Files (1.1 TB)