Whole exome and transcriptome sequencing of gastric cancer patients

Whole exome and RNA-seq of matched normal gastric mucosa (n=34) and gastric cancer tissues (n=34) from gastric cancer patients (n=34)

15/06/2018
136 samples
DAC: EGAC00001000598
Technology: Illumina HiSeq 4000

Access Policy1 Study Files

Metadata

Request Access

Agreement for accessing data of NGS based ctDNA tests

Data Access Agreement I. DEFINITIONS AND INTERPRETATIONS 1) “Data producers” refer to “Geneseeq Technology Inc.” 2) “User Institution” refers to institution requesting data access. 3) “Authorized Personnel” refers to individuals in the User Institution that are granted data access, including principle investigators who submit the application and other registered users in Appendix I. II. TERMS AND CONDITIONS 1) The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix I) and only for Research Purposes. Description of research projects (Appendix I) need to be submitted and reviewed by Data Access Committee (DCA) before data access. 2) Minimum protection measures are required for file access. Unencrypted data files can be held on a secured institutional compute system. It is suggested to set password logins and screenlocks for the data storage computers. For data transportation with USB or other portable hard drives, the data must be encrypted. 3) The User Institution agrees to preserve, at all times, the confidentiality of these Data. It is required to take all reasonable care to limit the possibility of identifying Research Participants in any research papers or publications. 4) The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 5) The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 6) The User Institution agrees to follow the Fort Lauderdale Guidelines (https://wellcome.ac.uk/sites/default/files/wtd003207_0.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 7) The User Institution agrees to follow the Publication Policy in Appendix II. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 8) The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 9) The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 10) The User Institution will notify Geneseeq Technology Inc. within 30 days of any changes or departures of Authorized Personnel. 11) The User Institution will notify Geneseeq Technology Inc. prior to any significant changes to the protocol for the Project. 12) The User Institution will notify Geneseeq Technology Inc. as soon as it becomes aware of a breach of the terms or conditions of this agreement. 13) Geneseeq Technology Inc. may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers will inform the User Institution of the changes and the User Institution may elect to accept the changes or terminate the agreement. 14) If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. APPENDIX I – APPLICANT INFORMATION 1. Name of User Institute 2. Project name 3. Project description and research aims 4. Information of principle investigator* 1) Name: 2) Position: 3) Institutional email address: 4) Phone Number: 5) Full postal address: 6) Registered users in this project (Include the information of all students and research staff who will have access to the data for the project): a. Name of Registered User b. Institutional Email c. Job Title *Co-investigators or collaborators in other Institutions must submit a separate data access application. APPENDIX II – PUBLICATION POLICY Data producers intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. Data producers anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 24 months after these data were first made available on the relevant hosting database, unless Data producers has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with Data producers.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001003064	Histone chaperone CHAF1A promotes proliferation and tumorigenicity in gastric cancer and impacts prognosis via context-depedent regulation of gene expression	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00002031172	fastq.gz	3.5 GB	Report
EGAF00002031173	fastq.gz	4.3 GB	Report
EGAF00002031174	fastq.gz	2.9 GB	Report
EGAF00002031175	fastq.gz	3.5 GB	Report
EGAF00002031176	fastq.gz	2.8 GB	Report
EGAF00002031177	fastq.gz	3.3 GB	Report
EGAF00002031178	fastq.gz	3.1 GB	Report
EGAF00002031179	fastq.gz	3.7 GB	Report
EGAF00002031180	fastq.gz	2.8 GB	Report
EGAF00002031181	fastq.gz	3.3 GB	Report
EGAF00002031182	fastq.gz	3.1 GB	Report
EGAF00002031183	fastq.gz	3.6 GB	Report
EGAF00002031184	fastq.gz	3.1 GB	Report
EGAF00002031185	fastq.gz	3.6 GB	Report
EGAF00002031186	fastq.gz	3.2 GB	Report
EGAF00002031187	fastq.gz	3.8 GB	Report
EGAF00002031188	fastq.gz	3.0 GB	Report
EGAF00002031189	fastq.gz	3.4 GB	Report
EGAF00002031190	fastq.gz	2.9 GB	Report
EGAF00002031191	fastq.gz	3.4 GB	Report
EGAF00002031192	fastq.gz	3.4 GB	Report
EGAF00002031193	fastq.gz	3.9 GB	Report
EGAF00002031194	fastq.gz	2.8 GB	Report
EGAF00002031195	fastq.gz	3.4 GB	Report
EGAF00002031196	fastq.gz	2.9 GB	Report
EGAF00002031197	fastq.gz	3.4 GB	Report
EGAF00002031198	fastq.gz	2.7 GB	Report
EGAF00002031199	fastq.gz	3.1 GB	Report
EGAF00002031200	fastq.gz	2.9 GB	Report
EGAF00002031201	fastq.gz	3.5 GB	Report
EGAF00002031202	fastq.gz	2.4 GB	Report
EGAF00002031203	fastq.gz	2.7 GB	Report
EGAF00002031204	fastq.gz	3.0 GB	Report
EGAF00002031205	fastq.gz	3.5 GB	Report
EGAF00002031206	fastq.gz	2.6 GB	Report
EGAF00002031207	fastq.gz	3.1 GB	Report
EGAF00002031208	fastq.gz	2.3 GB	Report
EGAF00002031209	fastq.gz	2.6 GB	Report
EGAF00002031210	fastq.gz	2.9 GB	Report
EGAF00002031211	fastq.gz	3.4 GB	Report
EGAF00002031212	fastq.gz	2.7 GB	Report
EGAF00002031213	fastq.gz	3.2 GB	Report
EGAF00002031214	fastq.gz	2.8 GB	Report
EGAF00002031215	fastq.gz	3.3 GB	Report
EGAF00002031216	fastq.gz	2.7 GB	Report
EGAF00002031217	fastq.gz	3.1 GB	Report
EGAF00002031218	fastq.gz	2.9 GB	Report
EGAF00002031219	fastq.gz	3.4 GB	Report
EGAF00002031220	fastq.gz	2.8 GB	Report
EGAF00002031221	fastq.gz	3.3 GB	Report
EGAF00002031222	fastq.gz	2.9 GB	Report
EGAF00002031223	fastq.gz	3.4 GB	Report
EGAF00002031224	fastq.gz	2.5 GB	Report
EGAF00002031225	fastq.gz	2.9 GB	Report
EGAF00002031226	fastq.gz	2.9 GB	Report
EGAF00002031227	fastq.gz	3.5 GB	Report
EGAF00002031228	fastq.gz	3.3 GB	Report
EGAF00002031229	fastq.gz	3.8 GB	Report
EGAF00002031230	fastq.gz	3.3 GB	Report
EGAF00002031231	fastq.gz	3.8 GB	Report
EGAF00002031232	fastq.gz	3.3 GB	Report
EGAF00002031233	fastq.gz	3.8 GB	Report
EGAF00002031234	fastq.gz	3.3 GB	Report
EGAF00002031235	fastq.gz	4.0 GB	Report
EGAF00002031236	fastq.gz	3.3 GB	Report
EGAF00002031237	fastq.gz	3.8 GB	Report
EGAF00002031238	fastq.gz	3.7 GB	Report
EGAF00002031239	fastq.gz	4.3 GB	Report
EGAF00002031240	fastq.gz	2.8 GB	Report
EGAF00002031241	fastq.gz	3.3 GB	Report
EGAF00002031242	fastq.gz	2.9 GB	Report
EGAF00002031243	fastq.gz	3.4 GB	Report
EGAF00002031244	fastq.gz	7.2 GB	Report
EGAF00002031245	fastq.gz	8.2 GB	Report
EGAF00002031246	fastq.gz	2.8 GB	Report
EGAF00002031247	fastq.gz	3.2 GB	Report
EGAF00002031248	fastq.gz	6.7 GB	Report
EGAF00002031249	fastq.gz	7.8 GB	Report
EGAF00002031250	fastq.gz	2.8 GB	Report
EGAF00002031251	fastq.gz	3.2 GB	Report
EGAF00002031252	fastq.gz	7.6 GB	Report
EGAF00002031253	fastq.gz	8.8 GB	Report
EGAF00002031254	fastq.gz	2.9 GB	Report
EGAF00002031255	fastq.gz	3.4 GB	Report
EGAF00002031256	fastq.gz	6.7 GB	Report
EGAF00002031257	fastq.gz	7.7 GB	Report
EGAF00002031258	fastq.gz	2.7 GB	Report
EGAF00002031259	fastq.gz	3.1 GB	Report
EGAF00002031260	fastq.gz	7.7 GB	Report
EGAF00002031261	fastq.gz	9.0 GB	Report
EGAF00002031262	fastq.gz	2.9 GB	Report
EGAF00002031263	fastq.gz	3.3 GB	Report
EGAF00002031264	fastq.gz	8.1 GB	Report
EGAF00002031265	fastq.gz	9.5 GB	Report
EGAF00002031266	fastq.gz	2.9 GB	Report
EGAF00002031267	fastq.gz	3.4 GB	Report
EGAF00002031268	fastq.gz	8.0 GB	Report
EGAF00002031269	fastq.gz	9.5 GB	Report
EGAF00002031270	fastq.gz	2.9 GB	Report
EGAF00002031271	fastq.gz	3.3 GB	Report
EGAF00002031272	fastq.gz	6.9 GB	Report
EGAF00002031273	fastq.gz	8.0 GB	Report
EGAF00002031274	fastq.gz	10.4 GB	Report
EGAF00002031275	fastq.gz	12.2 GB	Report
EGAF00002031276	fastq.gz	4.3 GB	Report
EGAF00002031277	fastq.gz	5.1 GB	Report
EGAF00002031278	fastq.gz	6.9 GB	Report
EGAF00002031279	fastq.gz	7.9 GB	Report
EGAF00002031280	fastq.gz	3.6 GB	Report
EGAF00002031281	fastq.gz	4.2 GB	Report
EGAF00002031282	fastq.gz	6.9 GB	Report
EGAF00002031283	fastq.gz	8.0 GB	Report
EGAF00002031284	fastq.gz	3.6 GB	Report
EGAF00002031285	fastq.gz	4.2 GB	Report
EGAF00002031286	fastq.gz	9.2 GB	Report
EGAF00002031287	fastq.gz	10.7 GB	Report
EGAF00002031288	fastq.gz	3.0 GB	Report
EGAF00002031289	fastq.gz	3.6 GB	Report
EGAF00002031290	fastq.gz	6.1 GB	Report
EGAF00002031291	fastq.gz	7.0 GB	Report
EGAF00002031292	fastq.gz	3.9 GB	Report
EGAF00002031293	fastq.gz	4.5 GB	Report
EGAF00002031294	fastq.gz	6.7 GB	Report
EGAF00002031295	fastq.gz	7.8 GB	Report
EGAF00002031296	fastq.gz	2.6 GB	Report
EGAF00002031297	fastq.gz	3.0 GB	Report
EGAF00002031298	fastq.gz	7.2 GB	Report
EGAF00002031299	fastq.gz	8.3 GB	Report
EGAF00002031300	fastq.gz	2.8 GB	Report
EGAF00002031301	fastq.gz	3.3 GB	Report
EGAF00002031302	fastq.gz	7.1 GB	Report
EGAF00002031303	fastq.gz	8.2 GB	Report
EGAF00002031304	fastq.gz	3.3 GB	Report
EGAF00002031305	fastq.gz	3.9 GB	Report
EGAF00002031306	fastq.gz	6.4 GB	Report
EGAF00002031307	fastq.gz	7.4 GB	Report
EGAF00002031308	fastq.gz	2.5 GB	Report
EGAF00002031309	fastq.gz	3.0 GB	Report
EGAF00002031310	fastq.gz	7.2 GB	Report
EGAF00002031311	fastq.gz	8.4 GB	Report
EGAF00002031312	fastq.gz	2.9 GB	Report
EGAF00002031313	fastq.gz	3.4 GB	Report
EGAF00002031314	fastq.gz	10.9 GB	Report
EGAF00002031315	fastq.gz	12.8 GB	Report
EGAF00002031316	fastq.gz	3.8 GB	Report
EGAF00002031317	fastq.gz	4.5 GB	Report
EGAF00002031318	fastq.gz	7.4 GB	Report
EGAF00002031319	fastq.gz	8.7 GB	Report
EGAF00002031320	fastq.gz	2.9 GB	Report
EGAF00002031321	fastq.gz	3.4 GB	Report
EGAF00002031322	fastq.gz	7.6 GB	Report
EGAF00002031323	fastq.gz	8.8 GB	Report
EGAF00002031324	fastq.gz	2.8 GB	Report
EGAF00002031325	fastq.gz	3.3 GB	Report
EGAF00002031326	fastq.gz	7.5 GB	Report
EGAF00002031327	fastq.gz	8.7 GB	Report
EGAF00002031328	fastq.gz	3.3 GB	Report
EGAF00002031329	fastq.gz	3.9 GB	Report
EGAF00002031330	fastq.gz	9.1 GB	Report
EGAF00002031331	fastq.gz	10.6 GB	Report
EGAF00002031332	fastq.gz	3.3 GB	Report
EGAF00002031333	fastq.gz	3.9 GB	Report
EGAF00002031334	fastq.gz	9.7 GB	Report
EGAF00002031335	fastq.gz	11.3 GB	Report
EGAF00002031336	fastq.gz	3.1 GB	Report
EGAF00002031337	fastq.gz	3.6 GB	Report
EGAF00002031338	fastq.gz	14.1 GB	Report
EGAF00002031339	fastq.gz	17.3 GB	Report
EGAF00002031340	fastq.gz	2.6 GB	Report
EGAF00002031341	fastq.gz	3.0 GB	Report
EGAF00002031342	fastq.gz	8.5 GB	Report
EGAF00002031343	fastq.gz	9.9 GB	Report
EGAF00002031344	fastq.gz	2.9 GB	Report
EGAF00002031345	fastq.gz	3.5 GB	Report
EGAF00002031346	fastq.gz	8.5 GB	Report
EGAF00002031347	fastq.gz	10.0 GB	Report
EGAF00002031348	fastq.gz	3.0 GB	Report
EGAF00002031349	fastq.gz	3.5 GB	Report
EGAF00002031350	fastq.gz	8.2 GB	Report
EGAF00002031351	fastq.gz	9.6 GB	Report
EGAF00002031352	fastq.gz	3.6 GB	Report
EGAF00002031353	fastq.gz	4.3 GB	Report
EGAF00002031354	fastq.gz	9.0 GB	Report
EGAF00002031355	fastq.gz	10.4 GB	Report
EGAF00002031356	fastq.gz	2.9 GB	Report
EGAF00002031357	fastq.gz	3.4 GB	Report
EGAF00002031358	fastq.gz	8.4 GB	Report
EGAF00002031359	fastq.gz	9.8 GB	Report
EGAF00002031360	fastq.gz	3.5 GB	Report
EGAF00002031361	fastq.gz	4.1 GB	Report
EGAF00002031362	fastq.gz	8.8 GB	Report
EGAF00002031363	fastq.gz	10.2 GB	Report
EGAF00002031364	fastq.gz	2.6 GB	Report
EGAF00002031365	fastq.gz	3.1 GB	Report
EGAF00002031366	fastq.gz	11.1 GB	Report
EGAF00002031367	fastq.gz	13.4 GB	Report
EGAF00002031368	fastq.gz	3.1 GB	Report
EGAF00002031369	fastq.gz	3.6 GB	Report
EGAF00002031370	fastq.gz	10.3 GB	Report
EGAF00002031371	fastq.gz	12.0 GB	Report
EGAF00002031372	fastq.gz	2.8 GB	Report
EGAF00002031373	fastq.gz	3.3 GB	Report
EGAF00002031374	fastq.gz	7.2 GB	Report
EGAF00002031375	fastq.gz	8.3 GB	Report
EGAF00002031376	fastq.gz	2.7 GB	Report
EGAF00002031377	fastq.gz	3.2 GB	Report
EGAF00002031378	fastq.gz	2.9 GB	Report
EGAF00002031379	fastq.gz	3.5 GB	Report
EGAF00002031380	fastq.gz	3.2 GB	Report
EGAF00002031381	fastq.gz	3.7 GB	Report
EGAF00002031382	fastq.gz	3.0 GB	Report
EGAF00002031383	fastq.gz	3.6 GB	Report
EGAF00002031384	fastq.gz	3.1 GB	Report
EGAF00002031385	fastq.gz	3.7 GB	Report
EGAF00002031386	fastq.gz	2.6 GB	Report
EGAF00002031387	fastq.gz	3.0 GB	Report
EGAF00002031388	fastq.gz	1.9 GB	Report
EGAF00002031389	fastq.gz	2.3 GB	Report
EGAF00002031390	fastq.gz	2.9 GB	Report
EGAF00002031391	fastq.gz	3.4 GB	Report
EGAF00002031392	fastq.gz	1.3 GB	Report
EGAF00002031393	fastq.gz	1.5 GB	Report
EGAF00002031394	fastq.gz	2.4 GB	Report
EGAF00002031395	fastq.gz	2.7 GB	Report
EGAF00002031396	fastq.gz	3.2 GB	Report
EGAF00002031397	fastq.gz	3.8 GB	Report
EGAF00002031398	fastq.gz	3.9 GB	Report
EGAF00002031399	fastq.gz	4.7 GB	Report
EGAF00002031400	fastq.gz	3.1 GB	Report
EGAF00002031401	fastq.gz	3.7 GB	Report
EGAF00002031402	fastq.gz	3.1 GB	Report
EGAF00002031403	fastq.gz	3.7 GB	Report
EGAF00002031404	fastq.gz	3.4 GB	Report
EGAF00002031405	fastq.gz	4.0 GB	Report
EGAF00002031406	fastq.gz	3.5 GB	Report
EGAF00002031407	fastq.gz	4.1 GB	Report
EGAF00002031408	fastq.gz	3.1 GB	Report
EGAF00002031409	fastq.gz	3.6 GB	Report
EGAF00002031410	fastq.gz	3.4 GB	Report
EGAF00002031411	fastq.gz	3.9 GB	Report
EGAF00002031412	fastq.gz	4.0 GB	Report
EGAF00002031413	fastq.gz	4.6 GB	Report
EGAF00002031414	fastq.gz	4.0 GB	Report
EGAF00002031415	fastq.gz	4.6 GB	Report
EGAF00002031416	fastq.gz	2.7 GB	Report
EGAF00002031417	fastq.gz	3.1 GB	Report
EGAF00002031418	fastq.gz	3.6 GB	Report
EGAF00002031419	fastq.gz	4.1 GB	Report
EGAF00002031420	fastq.gz	3.2 GB	Report
EGAF00002031421	fastq.gz	3.7 GB	Report
EGAF00002031422	fastq.gz	3.0 GB	Report
EGAF00002031423	fastq.gz	3.5 GB	Report
EGAF00002031424	fastq.gz	3.1 GB	Report
EGAF00002031425	fastq.gz	3.6 GB	Report
EGAF00002031426	fastq.gz	2.7 GB	Report
EGAF00002031427	fastq.gz	3.1 GB	Report
EGAF00002031428	fastq.gz	3.4 GB	Report
EGAF00002031429	fastq.gz	3.9 GB	Report
EGAF00002031430	fastq.gz	1.3 GB	Report
EGAF00002031431	fastq.gz	1.5 GB	Report
EGAF00002031432	fastq.gz	1.5 GB	Report
EGAF00002031433	fastq.gz	1.7 GB	Report
EGAF00002031434	fastq.gz	3.1 GB	Report
EGAF00002031435	fastq.gz	3.5 GB	Report
EGAF00002031436	fastq.gz	3.2 GB	Report
EGAF00002031437	fastq.gz	3.7 GB	Report
EGAF00002031438	fastq.gz	2.9 GB	Report
EGAF00002031439	fastq.gz	3.4 GB	Report
EGAF00002031440	fastq.gz	3.3 GB	Report
EGAF00002031441	fastq.gz	3.8 GB	Report
EGAF00002031442	fastq.gz	2.7 GB	Report
EGAF00002031443	fastq.gz	3.1 GB	Report
272 Files (1.3 TB)