Need Help?

sWGS of tumor samples for HGSOC copy-number signatures study

This dataset contains 319 bam files of shallow WGS data (0.1X) aligned to human genome assembly GRCh37 (hg19) from 300 tumor samples sequenced on HiSeq2500 in SE-50bp mode.

Request Access

The UK Translational Research in Ovarian Cancer (BriTROC) Consortium Data Access and Use Agreement for non personal data.

Between Ovarian Cancer Action, a company limited by guarantee (registered in England and Wales under number 5403443) and a charity (registered in England under number 1109743 and registered in Scotland under number SC043478) of 8 – 12 Camden High St, London NW1 0JH, and Cancer Research UK, a company limited by guarantee (registered in England and Wales under number 4325234) and a charity (registered in England under number 1089464 and registered in Scotland under number SC041666) of Angel Building, 407 St John Street, London, EC1V 4AD, United Kingdom (collectively referred to as the “Funders”), and the undersigned parties. This agreement governs the terms on which access will be granted to the genotype and expression data generated as a result of the activities of the BriTROC Consortium and deposited by members of the Consortium including the Funders. In signing this agreement, you are agreeing with the Funders to be bound by the terms and conditions set out in this agreement. NOW THEREFORE in consideration of the access to the Data provided by the Funders to User Institution, and for other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, and intending to be legally bound hereby, the parties hereto agree as follows: Definitions: “Application” means an application made by an entity (including You) to request access to the Data for a specific project and/or purpose. “Consortium” means the UK Translational Research in Ovarian Cancer consortium, known as BriTROC. “Data Access Committee” means the committee established by BriTROC to consider Applications. “Data” means non personal data including all and any human genetic and raw expression data obtained from the Consortium (which is currently available through the European Genome-phenome Archive). “Data Subject” means a person, who has been informed of the purpose for which the Data was collected, is currently held, and the purposes for which it can and will be distributed and disclosed, and has given his/her informed consent thereto. All references to individual Data Subjects have been removed and the Data is no longer personal data. User means a researcher whose User Institution has signed this Data Access Agreement and has received acknowledgement of the acceptance of its Application. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organisation at which the User is employed, affiliated or enrolled. User Institution is referred to within this Agreement as “You” (and “Your” shall be construed accordingly). Terms and Conditions: 1. You agree to preserve, at all times, the confidentiality and privacy of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise breach or infringe the confidentiality and privacy of information on Data Subjects. 
2. You agree not to attempt to link the Data to any other data source on the same samples, link the Data to any person or otherwise identify any Data Subject from the Data. We have taken organisational and technical measures to ensure this cannot happen. 
3. You agree not to transfer or disclose the Data, in whole or part, to others, except to persons within the User Institution for the fulfilment of the Purpose as reasonably necessary for Data/safety monitoring or programme management. If you wish to disclose the Data to a collaborator outside the User Institution, the third party must make a separate Application for access to the Data and enter into a separate Agreement. 
4. You agree to use the Data for the advancement of medical research, and solely for the approved purpose and project described in Your Application and for no other purpose, which is attached hereto as Schedule “B” (the “Purpose”); provided that any use of the Data beyond the scope of the Purpose will require a new Application, approval and Agreement. You agree to destroy the raw data once the project is completed, and upon request of the Consortium, provide written certification of such destruction. 
5. You agree that Data may be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, you will destroy earlier versions of the Data, and upon request of the Consortium, provide written certification of such destruction. 
6. You agree to acknowledge in any work or Publications based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of the Consortium and the Funders, in accordance with the Publications Policy attached as Schedule “A”. 
7. You agree and acknowledge that the Consortium, its members, the original Data creators, depositors or copyright holders, or the Funders: 
a) bear no legal responsibility or liability for the accuracy or comprehensiveness of the Data, or from any use of the Data including further analysis or interpretation of such Data; and
b) shall have no liability for any direct or indirect, consequential, or incidental damages or losses whatsoever arising out of Your use of the Data, or from the unavailability of, or lack of access to, the Data for whatever reason; and 
c) disclaim any and all representations, conditions or warranties (either express, implied or statutory) regarding the Data, including accuracy of the Data or that the Data corresponds with a particular description or is fit for a particular purpose. 
8. You shall indemnify, hold harmless and defend each of the Funders, any members of the Consortium and their respective directors, officers, employees and agents against any and all claims (including all associated legal fees and disbursements actually incurred) arising out of this Agreement, including without limitation against any damages or losses, consequential or otherwise, arising in any manner at all from or out of Your use of the Data. Section 8 shall not apply to any public body or institution that is prevented by applicable laws from providing indemnification. 9. You understand and acknowledge that the Data is owned by the Funders and protected by copyright, database rights and other intellectual property rights owned by the Funders. You agree that you shall not reproduce or copy the Data, except as reasonably required to carry out the Purpose and for no other purpose, or sell all or any part of the Data in any circumstances. 
10. You recognise that nothing in this Agreement shall operate to transfer to You any ownership or intellectual property rights relating to the Data. 
11. You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy or return any Data, and upon request, provide written certification of such destruction. For the avoidance of doubt clause 3, 7, 8, 14, 15 will continue to operate in full force and effect. 
12. You accept that it may be necessary for the Funders to alter the terms of this Agreement from time to time in order to address new concerns. In this event, one of the Funders or a representative of the Consortium will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 
13. You agree that you will submit a report to the Consortium Data Access Committee, if requested, on completion of the Purpose. The Consortium Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 
14. You agree that the Data is protected by and subject to applicable international laws, which may include without limitation the UK Data Protection Act 1998 and that you are responsible for ensuring compliance with any such laws. The Funders (via the BriTROC Data Access Committee) reserve the right to request and inspect Your data security and management documentation to ensure the adequacy of data protection measures in countries that have no privacy legislation comparable with that contained herein. 
15. Part or all of any section of this Agreement that is indefinite, invalid, illegal or otherwise voidable or unenforceable may be severed and the balance of this agreement will continue in full force and effect. 
Schedule “A” Publications Policy Any use of Data must acknowledge BriTROC using the following wording: "This study makes use of data generated by the BriTROC consortium. Funding for the project was provided by Ovraian Cancer Action and Cancer Research UK." and cite the relevant primary BRITROC publications (Piskorz, Ennis, Macintyre et al, Ann. Oncol 2015) which is the source of the Data. Schedule “B”
Application form (approved by the Consortium Data Access Committee)

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002557 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002034482 bam 1.4 GB
EGAF00002034483 bam 487.2 MB
EGAF00002034484 bam 482.3 MB
EGAF00002034485 bam 899.1 MB
EGAF00002034486 bam 670.3 MB
EGAF00002034487 bam 815.8 MB
EGAF00002034488 bam 678.4 MB
EGAF00002034489 bam 499.6 MB
EGAF00002034490 bam 477.7 MB
EGAF00002034491 bam 1.5 GB
EGAF00002034492 bam 579.1 MB
EGAF00002034493 bam 646.1 MB
EGAF00002034494 bam 1.0 GB
EGAF00002034495 bam 686.2 MB
EGAF00002034496 bam 433.6 MB
EGAF00002034497 bam 349.7 MB
EGAF00002034498 bam 826.6 MB
EGAF00002034499 bam 902.6 MB
EGAF00002034500 bam 304.1 MB
EGAF00002034501 bam 486.9 MB
EGAF00002034502 bam 718.3 MB
EGAF00002034503 bam 546.5 MB
EGAF00002034504 bam 506.5 MB
EGAF00002034551 bam 856.4 MB
EGAF00002034552 bam 1.2 GB
EGAF00002034553 bam 801.4 MB
EGAF00002034554 bam 946.9 MB
EGAF00002034555 bam 1.8 GB
EGAF00002034556 bam 451.2 MB
EGAF00002034557 bam 1.1 GB
EGAF00002034558 bam 931.8 MB
EGAF00002034559 bam 507.2 MB
EGAF00002034560 bam 1.4 GB
EGAF00002034561 bam 481.1 MB
EGAF00002034562 bam 702.4 MB
EGAF00002034563 bam 1.4 GB
EGAF00002034564 bam 507.4 MB
EGAF00002034565 bam 486.1 MB
EGAF00002034566 bam 1.3 GB
EGAF00002034567 bam 556.1 MB
EGAF00002034568 bam 365.0 MB
EGAF00002034569 bam 616.3 MB
EGAF00002034570 bam 992.0 MB
EGAF00002034571 bam 448.7 MB
EGAF00002034572 bam 542.6 MB
EGAF00002034573 bam 347.3 MB
EGAF00002034620 bam 508.8 MB
EGAF00002034621 bam 1.1 GB
EGAF00002034622 bam 337.3 MB
EGAF00002034623 bam 920.1 MB
EGAF00002034624 bam 375.1 MB
EGAF00002034625 bam 777.2 MB
EGAF00002034626 bam 394.8 MB
EGAF00002034627 bam 456.6 MB
EGAF00002034628 bam 1.0 GB
EGAF00002034629 bam 904.0 MB
EGAF00002034630 bam 313.1 MB
EGAF00002034631 bam 393.7 MB
EGAF00002034632 bam 947.0 MB
EGAF00002034633 bam 153.9 MB
EGAF00002034634 bam 414.5 MB
EGAF00002034635 bam 253.8 MB
EGAF00002034636 bam 373.6 MB
EGAF00002034637 bam 2.2 GB
EGAF00002034638 bam 947.5 MB
EGAF00002034639 bam 281.4 MB
EGAF00002034640 bam 334.1 MB
EGAF00002034641 bam 1.4 GB
EGAF00002034642 bam 879.1 MB
EGAF00002034689 bam 169.6 MB
EGAF00002034690 bam 719.3 MB
EGAF00002034691 bam 209.8 MB
EGAF00002034692 bam 986.0 MB
EGAF00002034693 bam 447.6 MB
EGAF00002034694 bam 1.2 GB
EGAF00002034695 bam 686.6 MB
EGAF00002034696 bam 446.4 MB
EGAF00002034697 bam 840.8 MB
EGAF00002034698 bam 197.0 MB
EGAF00002034699 bam 802.7 MB
EGAF00002034700 bam 796.2 MB
EGAF00002034701 bam 472.0 MB
EGAF00002034702 bam 845.2 MB
EGAF00002034703 bam 1.0 GB
EGAF00002034704 bam 141.3 MB
EGAF00002034705 bam 317.0 MB
EGAF00002034706 bam 1.0 GB
EGAF00002034707 bam 735.4 MB
EGAF00002034708 bam 904.2 MB
EGAF00002034709 bam 682.6 MB
EGAF00002034710 bam 451.5 MB
EGAF00002034711 bam 1.1 GB
EGAF00002034758 bam 1.0 GB
EGAF00002034759 bam 1.0 GB
EGAF00002034760 bam 1.2 GB
EGAF00002034761 bam 684.5 MB
EGAF00002034762 bam 507.9 MB
EGAF00002034763 bam 507.4 MB
EGAF00002034764 bam 397.0 MB
EGAF00002034765 bam 300.6 MB
EGAF00002034766 bam 330.5 MB
EGAF00002034767 bam 442.2 MB
EGAF00002034768 bam 303.7 MB
EGAF00002034769 bam 643.3 MB
EGAF00002034770 bam 217.4 MB
EGAF00002034771 bam 321.3 MB
EGAF00002034772 bam 264.7 MB
EGAF00002034773 bam 474.9 MB
EGAF00002034774 bam 628.0 MB
EGAF00002034775 bam 200.2 MB
EGAF00002034776 bam 287.4 MB
EGAF00002034777 bam 339.1 MB
EGAF00002034778 bam 212.2 MB
EGAF00002034779 bam 1.0 GB
EGAF00002034780 bam 2.2 GB
EGAF00002034827 bam 227.4 MB
EGAF00002034828 bam 571.0 MB
EGAF00002034829 bam 220.8 MB
EGAF00002034830 bam 1.0 GB
EGAF00002034831 bam 608.9 MB
EGAF00002034832 bam 244.6 MB
EGAF00002034833 bam 848.3 MB
EGAF00002034834 bam 496.8 MB
EGAF00002034835 bam 449.1 MB
EGAF00002034921 bam 979.9 MB
EGAF00002034922 bam 672.1 MB
EGAF00002034923 bam 752.6 MB
EGAF00002034924 bam 809.5 MB
EGAF00002034925 bam 500.3 MB
EGAF00002034926 bam 663.8 MB
EGAF00002034927 bam 807.9 MB
EGAF00002034928 bam 1.1 GB
EGAF00002034929 bam 1.1 GB
EGAF00002034930 bam 1.0 GB
EGAF00002034931 bam 550.0 MB
EGAF00002034932 bam 451.0 MB
EGAF00002034978 bam 714.2 MB
EGAF00002034979 bam 594.5 MB
EGAF00002034980 bam 1.0 GB
EGAF00002034981 bam 1.0 GB
EGAF00002034982 bam 655.0 MB
EGAF00002034983 bam 653.8 MB
EGAF00002034984 bam 463.3 MB
EGAF00002034985 bam 217.9 MB
EGAF00002034986 bam 1.3 GB
EGAF00002034987 bam 976.2 MB
EGAF00002034988 bam 1.1 GB
EGAF00002034989 bam 336.8 MB
EGAF00002034990 bam 900.2 MB
EGAF00002034991 bam 362.5 MB
EGAF00002034992 bam 499.5 MB
EGAF00002034993 bam 823.6 MB
EGAF00002034994 bam 620.0 MB
EGAF00002034995 bam 1.1 GB
EGAF00002034996 bam 605.8 MB
EGAF00002034997 bam 777.1 MB
EGAF00002034998 bam 889.8 MB
EGAF00002034999 bam 940.3 MB
EGAF00002035000 bam 865.9 MB
EGAF00002035046 bam 695.1 MB
EGAF00002035047 bam 767.3 MB
EGAF00002035048 bam 870.7 MB
EGAF00002035049 bam 631.4 MB
EGAF00002035050 bam 1.5 GB
EGAF00002035051 bam 545.6 MB
EGAF00002035052 bam 334.4 MB
EGAF00002035053 bam 860.2 MB
EGAF00002035054 bam 827.8 MB
EGAF00002035055 bam 1.3 GB
EGAF00002035056 bam 1.8 GB
EGAF00002035057 bam 773.9 MB
EGAF00002035058 bam 768.8 MB
EGAF00002035059 bam 967.4 MB
EGAF00002035060 bam 1.1 GB
EGAF00002035061 bam 1.1 GB
EGAF00002035062 bam 472.7 MB
EGAF00002035063 bam 1.4 GB
EGAF00002035064 bam 1.1 GB
EGAF00002035065 bam 1.2 GB
EGAF00002035066 bam 1.4 GB
EGAF00002035067 bam 975.0 MB
EGAF00002035068 bam 1.2 GB
EGAF00002035115 bam 863.6 MB
EGAF00002035116 bam 941.4 MB
EGAF00002035117 bam 594.0 MB
EGAF00002035118 bam 793.7 MB
EGAF00002035119 bam 345.5 MB
EGAF00002035120 bam 1.1 GB
EGAF00002035121 bam 909.3 MB
EGAF00002035122 bam 693.9 MB
EGAF00002035123 bam 511.8 MB
EGAF00002035124 bam 842.2 MB
EGAF00002035125 bam 483.1 MB
EGAF00002035126 bam 1.3 GB
EGAF00002035127 bam 473.2 MB
EGAF00002035128 bam 1.1 GB
EGAF00002035129 bam 674.3 MB
EGAF00002035130 bam 537.5 MB
EGAF00002035131 bam 354.3 MB
EGAF00002035132 bam 786.3 MB
EGAF00002035133 bam 578.3 MB
EGAF00002035134 bam 699.2 MB
EGAF00002035135 bam 181.2 MB
EGAF00002035136 bam 538.1 MB
EGAF00002035137 bam 1.1 GB
EGAF00002035184 bam 549.6 MB
EGAF00002035185 bam 497.8 MB
EGAF00002035186 bam 353.7 MB
EGAF00002035187 bam 803.1 MB
EGAF00002035188 bam 1.2 GB
EGAF00002035189 bam 1.2 GB
EGAF00002035190 bam 305.0 MB
EGAF00002035191 bam 383.9 MB
EGAF00002035192 bam 809.3 MB
EGAF00002035193 bam 759.5 MB
EGAF00002035194 bam 730.2 MB
EGAF00002035195 bam 676.0 MB
EGAF00002035196 bam 566.4 MB
EGAF00002035197 bam 690.6 MB
EGAF00002035198 bam 598.5 MB
EGAF00002035199 bam 698.5 MB
EGAF00002035200 bam 915.9 MB
EGAF00002035201 bam 541.5 MB
EGAF00002035202 bam 831.8 MB
EGAF00002035203 bam 1.9 GB
EGAF00002035204 bam 454.2 MB
EGAF00002035205 bam 862.1 MB
EGAF00002035206 bam 415.4 MB
EGAF00002035253 bam 784.3 MB
EGAF00002035254 bam 609.1 MB
EGAF00002035255 bam 883.0 MB
EGAF00002035256 bam 1.3 GB
EGAF00002035257 bam 47.3 MB
EGAF00002035258 bam 636.2 MB
EGAF00002035259 bam 601.6 MB
EGAF00002035260 bam 557.1 MB
EGAF00002035261 bam 621.9 MB
EGAF00002035262 bam 642.1 MB
EGAF00002035263 bam 820.3 MB
EGAF00002035264 bam 473.5 MB
EGAF00002035265 bam 553.7 MB
EGAF00002035266 bam 519.5 MB
EGAF00002035267 bam 810.8 MB
EGAF00002035268 bam 641.7 MB
EGAF00002035269 bam 671.0 MB
EGAF00002035270 bam 850.5 MB
EGAF00002035271 bam 497.0 MB
EGAF00002035272 bam 779.0 MB
EGAF00002035273 bam 686.8 MB
EGAF00002035274 bam 419.4 MB
EGAF00002035275 bam 424.9 MB
EGAF00002035322 bam 520.6 MB
EGAF00002035323 bam 510.9 MB
EGAF00002035324 bam 607.8 MB
EGAF00002035325 bam 692.1 MB
EGAF00002035326 bam 595.1 MB
EGAF00002035327 bam 683.6 MB
EGAF00002035328 bam 577.0 MB
EGAF00002035329 bam 1.0 GB
EGAF00002035330 bam 569.9 MB
EGAF00002035331 bam 976.5 MB
EGAF00002035332 bam 1.5 GB
EGAF00002035333 bam 952.8 MB
EGAF00002035334 bam 690.4 MB
EGAF00002035335 bam 954.2 MB
EGAF00002035336 bam 1.1 GB
EGAF00002035337 bam 594.8 MB
EGAF00002035338 bam 753.9 MB
EGAF00002035339 bam 1.3 GB
EGAF00002035340 bam 955.1 MB
EGAF00002035341 bam 665.5 MB
EGAF00002035342 bam 607.4 MB
EGAF00002035343 bam 843.0 MB
EGAF00002035344 bam 1.1 GB
EGAF00002035391 bam 1.0 GB
EGAF00002035392 bam 845.4 MB
EGAF00002035393 bam 456.1 MB
EGAF00002035394 bam 776.7 MB
EGAF00002035395 bam 1.3 GB
EGAF00002035396 bam 742.7 MB
EGAF00002035397 bam 1.4 GB
EGAF00002035398 bam 1.1 GB
EGAF00002035399 bam 874.5 MB
EGAF00002035400 bam 687.4 MB
EGAF00002035401 bam 681.9 MB
EGAF00002035402 bam 452.5 MB
EGAF00002035403 bam 1.2 GB
EGAF00002035404 bam 788.2 MB
EGAF00002035405 bam 591.7 MB
EGAF00002035406 bam 836.1 MB
EGAF00002035407 bam 782.9 MB
EGAF00002035408 bam 485.1 MB
EGAF00002035409 bam 641.6 MB
EGAF00002035410 bam 880.9 MB
EGAF00002035411 bam 830.9 MB
EGAF00002035412 bam 496.8 MB
EGAF00002035413 bam 690.1 MB
EGAF00002035460 bam 449.5 MB
EGAF00002035461 bam 591.6 MB
EGAF00002035462 bam 1.4 GB
EGAF00002035463 bam 290.0 MB
EGAF00002035464 bam 678.0 MB
EGAF00002035465 bam 1.5 GB
EGAF00002035466 bam 873.7 MB
EGAF00002035467 bam 1.5 GB
EGAF00002035468 bam 854.3 MB
EGAF00002035469 bam 774.4 MB
EGAF00002035470 bam 640.3 MB
EGAF00002035471 bam 607.8 MB
EGAF00002035472 bam 711.2 MB
EGAF00002035473 bam 841.7 MB
EGAF00002035474 bam 1.1 GB
EGAF00002035475 bam 566.8 MB
EGAF00002035476 bam 475.6 MB
EGAF00002035477 bam 1.1 GB
EGAF00002035478 bam 993.9 MB
EGAF00002035479 bam 1.1 GB
EGAF00002035480 bam 942.1 MB
EGAF00002035481 bam 649.2 MB
EGAF00002035482 bam 956.6 MB
320 Files (238.0 GB)