Dataset

RNAseq of human fetal pancreas development

Dataset ID Technology Samples
EGAD00001004210 Illumina HiSeq 4000 12

Dataset Description

The dataset comprises RNA-seq information of 4 subpopulations sorted from human fetal pancreas of 3 different donors. Low input libraries were generated using the Smart-seq2 protocol after Ampure XP cleanup of the total RNA extracted from the sorted cells. Libraries were multiplexed and sequenced paired-end over 2 lanes of HiSeq4000 each. Raw data was aligned to the human genome refernence GRCh37 using STAR v2.5.1b with GENCODE v19 as transcriptome reference, and unaligned reads were folded into the final uploaded bams.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

Foetal pancreas DAC
Contact person: Anna Gloyn
Email: agloyn [at] stanford [dot] edu
More details: EGAC00001001039

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