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Dataset for the study - Detection of cell-free DNA fragmentation and copy number alterations in cerebrospinal fluid from glioma patients

FASTQ files from sequencing to < 0.4x depth of coverage of thirteen glioma patients. Indexed sequencing libraries were prepared using a commercially available kit (ThruPLEX-Plasma Seq, Rubicon Genomics). Libraries were pooled in equimolar amounts and sequenced on a HiSeq 4000 (Illumina) generating 150-bp paired-end reads.

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Data access committee policy for the study - Detection of cell-free DNA fragmentation and copy number alterations in cerebrospinal fluid from glioma patients

Conditions of access: The account holder will abide by all current and future policies of the EGA for computer use All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access: The EGA will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA help-desk provides training when needed. Review: All individuals request access to the EGA user authorization tools will be reviewed annually EGA committee. Request of access: Access is granted to those Data Access Committee (DAC) members named in this section. The DAC members reserve the right to decline request to access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003255 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002216850 fq.gz 293.7 MB
EGAF00002216851 fq.gz 328.4 MB
EGAF00002216852 fq.gz 555.5 MB
EGAF00002216853 fq.gz 619.1 MB
EGAF00002216854 fq.gz 416.3 MB
EGAF00002216855 fq.gz 478.7 MB
EGAF00002216856 fq.gz 1.0 GB
EGAF00002216857 fq.gz 1.2 GB
EGAF00002216858 fq.gz 445.4 MB
EGAF00002216859 fq.gz 508.8 MB
EGAF00002216860 fq.gz 1.1 GB
EGAF00002216861 fq.gz 1.3 GB
EGAF00002216862 fq.gz 2.2 GB
EGAF00002216863 fq.gz 2.5 GB
EGAF00002216864 fq.gz 1.0 GB
EGAF00002216865 fq.gz 1.2 GB
EGAF00002216866 fq.gz 1.1 GB
EGAF00002216867 fq.gz 1.3 GB
EGAF00002216868 fq.gz 1.1 GB
EGAF00002216869 fq.gz 1.3 GB
EGAF00002216870 fq.gz 473.4 MB
EGAF00002216871 fq.gz 527.0 MB
EGAF00002216872 fq.gz 754.3 MB
EGAF00002216873 fq.gz 875.2 MB
EGAF00002216874 fq.gz 609.7 MB
EGAF00002216875 fq.gz 611.6 MB
26 Files (23.8 GB)