WGS profiling of pediatric osteosarcoma

Primary pediatric osteosarcoma samples were collected and profiled using WGS. When possible, germline and tumor samples were collected. For some patients, multiple tumor tissues were collected and sequenced. Some of the samples were used to derive PDTX models, which were also profiled with WGS. Paired end sequencing was performed on Illumina HiSeq instruments and FASTQ files reported.

21/12/2018
75 samples
DAC: EGAC00001001014
Technology: unspecified

Access Policy1 Study Files

Metadata

Request Access

Research focused data access

All data access requests should be submitted to Dr. Alejandro Sweet-Cordero at UCSF. All requests will be reviewed by the access committee.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001003201	Whole genome and RNAseq analysis of pediatric osteosarcoma	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00002300983	fastq.gz	17.2 GB	Report
EGAF00002300984	fastq.gz	17.9 GB	Report
EGAF00002300985	fastq.gz	17.1 GB	Report
EGAF00002300986	fastq.gz	17.9 GB	Report
EGAF00002300987	fastq.gz	17.0 GB	Report
EGAF00002300988	fastq.gz	17.8 GB	Report
EGAF00002300989	fastq.gz	17.0 GB	Report
EGAF00002300990	fastq.gz	17.4 GB	Report
EGAF00002300991	fastq.gz	16.6 GB	Report
EGAF00002300992	fastq.gz	17.1 GB	Report
EGAF00002300993	fastq.gz	17.3 GB	Report
EGAF00002300994	fastq.gz	17.6 GB	Report
EGAF00002300995	fastq.gz	31.0 GB	Report
EGAF00002300996	fastq.gz	36.9 GB	Report
EGAF00002300997	fastq.gz	64.6 GB	Report
EGAF00002300998	fastq.gz	76.3 GB	Report
EGAF00002300999	fastq.gz	28.9 GB	Report
EGAF00002301000	fastq.gz	34.4 GB	Report
EGAF00002301001	fastq.gz	61.9 GB	Report
EGAF00002301002	fastq.gz	71.7 GB	Report
EGAF00002301003	fastq.gz	32.4 GB	Report
EGAF00002301004	fastq.gz	36.5 GB	Report
EGAF00002301005	fastq.gz	29.5 GB	Report
EGAF00002301006	fastq.gz	35.5 GB	Report
EGAF00002301007	fastq.gz	36.0 GB	Report
EGAF00002301008	fastq.gz	38.9 GB	Report
EGAF00002301009	fastq.gz	35.9 GB	Report
EGAF00002301010	fastq.gz	42.4 GB	Report
EGAF00002301011	fastq.gz	68.2 GB	Report
EGAF00002301012	fastq.gz	81.9 GB	Report
EGAF00002301013	fastq.gz	33.9 GB	Report
EGAF00002301014	fastq.gz	38.5 GB	Report
EGAF00002301015	fastq.gz	40.5 GB	Report
EGAF00002301016	fastq.gz	43.6 GB	Report
EGAF00002301017	fastq.gz	39.5 GB	Report
EGAF00002301018	fastq.gz	42.7 GB	Report
EGAF00002301019	fastq.gz	63.6 GB	Report
EGAF00002301020	fastq.gz	77.2 GB	Report
EGAF00002301021	fastq.gz	36.8 GB	Report
EGAF00002301022	fastq.gz	42.3 GB	Report
EGAF00002301023	fastq.gz	16.0 GB	Report
EGAF00002301024	fastq.gz	16.6 GB	Report
EGAF00002301025	fastq.gz	16.2 GB	Report
EGAF00002301026	fastq.gz	16.8 GB	Report
EGAF00002301027	fastq.gz	16.2 GB	Report
EGAF00002301028	fastq.gz	16.8 GB	Report
EGAF00002301029	fastq.gz	16.5 GB	Report
EGAF00002301030	fastq.gz	16.8 GB	Report
EGAF00002301031	fastq.gz	16.6 GB	Report
EGAF00002301032	fastq.gz	16.9 GB	Report
EGAF00002301033	fastq.gz	40.3 GB	Report
EGAF00002301034	fastq.gz	43.4 GB	Report
EGAF00002301035	fastq.gz	32.9 GB	Report
EGAF00002301036	fastq.gz	36.0 GB	Report
EGAF00002301037	fastq.gz	60.9 GB	Report
EGAF00002301038	fastq.gz	70.3 GB	Report
EGAF00002301039	fastq.gz	33.4 GB	Report
EGAF00002301040	fastq.gz	38.7 GB	Report
EGAF00002301041	fastq.gz	39.1 GB	Report
EGAF00002301042	fastq.gz	41.3 GB	Report
EGAF00002301043	fastq.gz	67.8 GB	Report
EGAF00002301044	fastq.gz	76.7 GB	Report
EGAF00002301045	fastq.gz	27.0 GB	Report
EGAF00002301046	fastq.gz	30.6 GB	Report
EGAF00002301047	fastq.gz	40.4 GB	Report
EGAF00002301048	fastq.gz	43.2 GB	Report
EGAF00002301049	fastq.gz	36.4 GB	Report
EGAF00002301050	fastq.gz	40.0 GB	Report
EGAF00002301051	fastq.gz	39.8 GB	Report
EGAF00002301052	fastq.gz	42.9 GB	Report
EGAF00002301053	fastq.gz	58.0 GB	Report
EGAF00002301054	fastq.gz	72.1 GB	Report
EGAF00002301055	fastq.gz	38.3 GB	Report
EGAF00002301056	fastq.gz	45.7 GB	Report
EGAF00002301057	fastq.gz	29.3 GB	Report
EGAF00002301058	fastq.gz	34.3 GB	Report
EGAF00002301059	fastq.gz	40.0 GB	Report
EGAF00002301060	fastq.gz	43.2 GB	Report
EGAF00002301061	fastq.gz	37.2 GB	Report
EGAF00002301062	fastq.gz	42.8 GB	Report
EGAF00002301063	fastq.gz	37.0 GB	Report
EGAF00002301064	fastq.gz	42.4 GB	Report
EGAF00002301065	fastq.gz	34.9 GB	Report
EGAF00002301066	fastq.gz	39.6 GB	Report
EGAF00002301067	fastq.gz	36.4 GB	Report
EGAF00002301068	fastq.gz	40.9 GB	Report
EGAF00002301069	fastq.gz	37.6 GB	Report
EGAF00002301070	fastq.gz	42.2 GB	Report
EGAF00002301071	fastq.gz	27.1 GB	Report
EGAF00002301072	fastq.gz	30.6 GB	Report
EGAF00002301073	fastq.gz	26.0 GB	Report
EGAF00002301074	fastq.gz	29.6 GB	Report
EGAF00002301075	fastq.gz	38.0 GB	Report
EGAF00002301076	fastq.gz	41.5 GB	Report
EGAF00002301077	fastq.gz	33.8 GB	Report
EGAF00002301078	fastq.gz	39.2 GB	Report
EGAF00002301079	fastq.gz	66.9 GB	Report
EGAF00002301080	fastq.gz	78.7 GB	Report
EGAF00002301081	fastq.gz	39.5 GB	Report
EGAF00002301082	fastq.gz	44.3 GB	Report
EGAF00002301083	fastq.gz	66.1 GB	Report
EGAF00002301084	fastq.gz	74.6 GB	Report
EGAF00002301085	fastq.gz	39.0 GB	Report
EGAF00002301086	fastq.gz	43.7 GB	Report
EGAF00002301087	fastq.gz	32.9 GB	Report
EGAF00002301088	fastq.gz	40.2 GB	Report
EGAF00002301089	fastq.gz	63.0 GB	Report
EGAF00002301090	fastq.gz	77.6 GB	Report
EGAF00002301091	fastq.gz	29.9 GB	Report
EGAF00002301092	fastq.gz	35.6 GB	Report
EGAF00002301093	fastq.gz	59.6 GB	Report
EGAF00002301094	fastq.gz	70.7 GB	Report
EGAF00002301095	fastq.gz	31.7 GB	Report
EGAF00002301096	fastq.gz	40.4 GB	Report
EGAF00002301097	fastq.gz	33.3 GB	Report
EGAF00002301098	fastq.gz	39.1 GB	Report
EGAF00002301099	fastq.gz	66.9 GB	Report
EGAF00002301100	fastq.gz	79.3 GB	Report
EGAF00002301101	fastq.gz	32.2 GB	Report
EGAF00002301102	fastq.gz	38.8 GB	Report
EGAF00002301103	fastq.gz	57.2 GB	Report
EGAF00002301104	fastq.gz	65.4 GB	Report
EGAF00002301105	fastq.gz	58.6 GB	Report
EGAF00002301106	fastq.gz	65.1 GB	Report
EGAF00002301107	fastq.gz	29.5 GB	Report
EGAF00002301108	fastq.gz	35.9 GB	Report
EGAF00002301109	fastq.gz	30.0 GB	Report
EGAF00002301110	fastq.gz	37.8 GB	Report
EGAF00002301111	fastq.gz	35.7 GB	Report
EGAF00002301112	fastq.gz	40.7 GB	Report
EGAF00002301113	fastq.gz	57.1 GB	Report
EGAF00002301114	fastq.gz	71.0 GB	Report
EGAF00002301115	fastq.gz	27.2 GB	Report
EGAF00002301116	fastq.gz	32.1 GB	Report
EGAF00002301117	fastq.gz	60.4 GB	Report
EGAF00002301118	fastq.gz	74.7 GB	Report
EGAF00002301119	fastq.gz	65.2 GB	Report
EGAF00002301120	fastq.gz	70.6 GB	Report
EGAF00002301121	fastq.gz	31.2 GB	Report
EGAF00002301122	fastq.gz	35.4 GB	Report
EGAF00002301123	fastq.gz	31.4 GB	Report
EGAF00002301124	fastq.gz	37.3 GB	Report
EGAF00002301125	fastq.gz	71.0 GB	Report
EGAF00002301126	fastq.gz	83.8 GB	Report
EGAF00002301127	fastq.gz	29.0 GB	Report
EGAF00002301128	fastq.gz	34.0 GB	Report
EGAF00002301129	fastq.gz	32.3 GB	Report
EGAF00002301130	fastq.gz	37.7 GB	Report
EGAF00002301131	fastq.gz	40.7 GB	Report
EGAF00002301132	fastq.gz	45.6 GB	Report
EGAF00002301133	fastq.gz	86.5 GB	Report
EGAF00002301134	fastq.gz	96.9 GB
EGAF00002301134	fastq.gz	96.8 GB	Report
EGAF00002301135	fastq.gz	71.0 GB	Report
EGAF00002301136	fastq.gz	79.7 GB	Report
EGAF00002301137	fastq.gz	43.3 GB	Report
EGAF00002301138	fastq.gz	52.8 GB	Report
EGAF00002301139	fastq.gz	33.1 GB	Report
EGAF00002301140	fastq.gz	37.2 GB	Report
EGAF00002301141	fastq.gz	93.2 GB	Report
EGAF00002301142	fastq.gz	105.4 GB	Report
EGAF00002301143	fastq.gz	64.2 GB	Report
EGAF00002301144	fastq.gz	72.7 GB	Report
EGAF00002301145	fastq.gz	73.4 GB	Report
EGAF00002301146	fastq.gz	82.9 GB	Report
EGAF00002301147	fastq.gz	27.5 GB	Report
EGAF00002301148	fastq.gz	30.9 GB	Report
EGAF00002301149	fastq.gz	63.8 GB	Report
EGAF00002301150	fastq.gz	70.0 GB	Report
EGAF00002301151	fastq.gz	70.8 GB	Report
EGAF00002301152	fastq.gz	77.9 GB	Report
171 Files (7.7 TB)