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RNAseq profiling of pediatric osteosarcoma

Primary pediatric osteosarcoma samples were collected and profiled using RNAseq. When possible, germline and tumor samples were collected. For some patients, multiple tumor tissues were collected and sequenced. Some of the samples were used to derive PDTX models, which were also profiled with RNAseq. Paired end sequencing was performed on Illumina HiSeq instruments and FASTQ files reported.

Request Access

Research focused data access

All data access requests should be submitted to Dr. Alejandro Sweet-Cordero at UCSF. All requests will be reviewed by the access committee.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003201 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002301153 fastq.gz 1.9 GB
EGAF00002301154 fastq.gz 1.9 GB
EGAF00002301155 fastq.gz 1.8 GB
EGAF00002301156 fastq.gz 1.8 GB
EGAF00002301157 fastq.gz 2.2 GB
EGAF00002301158 fastq.gz 2.3 GB
EGAF00002301159 fastq.gz 3.0 GB
EGAF00002301160 fastq.gz 3.1 GB
EGAF00002301161 fastq.gz 4.3 GB
EGAF00002301162 fastq.gz 4.7 GB
EGAF00002301163 fastq.gz 1.6 GB
EGAF00002301164 fastq.gz 1.7 GB
EGAF00002301165 fastq.gz 1.4 GB
EGAF00002301166 fastq.gz 1.4 GB
EGAF00002301167 fastq.gz 1.9 GB
EGAF00002301168 fastq.gz 1.9 GB
EGAF00002301169 fastq.gz 774.5 MB
EGAF00002301170 fastq.gz 842.1 MB
EGAF00002301171 fastq.gz 2.6 GB
EGAF00002301172 fastq.gz 2.6 GB
EGAF00002301173 fastq.gz 5.8 GB
EGAF00002301174 fastq.gz 6.2 GB
EGAF00002301175 fastq.gz 2.0 GB
EGAF00002301176 fastq.gz 2.0 GB
EGAF00002301177 fastq.gz 9.8 GB
EGAF00002301178 fastq.gz 10.4 GB
EGAF00002301179 fastq.gz 3.3 GB
EGAF00002301180 fastq.gz 3.7 GB
EGAF00002301181 fastq.gz 2.3 GB
EGAF00002301182 fastq.gz 2.4 GB
EGAF00002301183 fastq.gz 2.2 GB
EGAF00002301184 fastq.gz 2.3 GB
EGAF00002301185 fastq.gz 4.2 GB
EGAF00002301186 fastq.gz 4.3 GB
EGAF00002301187 fastq.gz 1.9 GB
EGAF00002301188 fastq.gz 2.0 GB
EGAF00002301189 fastq.gz 2.6 GB
EGAF00002301190 fastq.gz 2.7 GB
EGAF00002301191 fastq.gz 4.1 GB
EGAF00002301192 fastq.gz 4.5 GB
EGAF00002301193 fastq.gz 5.6 GB
EGAF00002301194 fastq.gz 6.0 GB
EGAF00002301195 fastq.gz 6.1 GB
EGAF00002301196 fastq.gz 6.8 GB
EGAF00002301197 fastq.gz 2.9 GB
EGAF00002301198 fastq.gz 3.0 GB
EGAF00002301199 fastq.gz 2.1 GB
EGAF00002301200 fastq.gz 2.2 GB
EGAF00002301201 fastq.gz 4.2 GB
EGAF00002301202 fastq.gz 4.4 GB
EGAF00002301203 fastq.gz 2.9 GB
EGAF00002301204 fastq.gz 3.1 GB
EGAF00002301205 fastq.gz 5.3 GB
EGAF00002301206 fastq.gz 5.9 GB
EGAF00002301207 fastq.gz 5.9 GB
EGAF00002301208 fastq.gz 6.5 GB
EGAF00002301209 fastq.gz 6.5 GB
EGAF00002301210 fastq.gz 7.0 GB
EGAF00002301211 fastq.gz 6.7 GB
EGAF00002301212 fastq.gz 7.5 GB
60 Files (223.3 GB)