About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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SNV and indel calls from 8086 individuals in the British Autozygosity Populations BioResource dataset

This includes variant calls (single nucleotide variants and small insertions/deletions) from 8086 (mostly British Pakistani/British Bangladeshi) individuals from the following studies: 1. 3781 British Pakistani/British Bangladeshi adults from East London Genes and Health 2. 2791 British South Asian mothers from Born in Bradford 3. 1428 British South Asian adults from Birmingham 4. 86 individuals (mixed ancestries) from families with rare diseases, from Queen Mary University London All of the Birmingham and most of the Born in Bradford samples were previously sequenced as part of PMID: 26940866. Mapping was done with bwa-mem and variant calling was carried out with GATK HaplotypeCaller. We removed variant sites for which the following was true: SNPs: "QD < 2.0 || FS > 30 || MQ < 40.0 || MQRankSum < -12.5 || ReadPosRankSum < -8.0" Indels: "QD < 2.0 || FS > 30 || ReadPosRankSum < -20.0"

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Wellcome Trust Sanger Institute Data Sharing Policy

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001001565 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00002338043 vcf.gz 2.6 GB Report
EGAF00002338044 vcf.gz 304.4 MB Report
EGAF00002338045 vcf.gz 2.3 GB Report
EGAF00002338046 vcf.gz 285.9 MB Report
EGAF00002338047 vcf.gz 3.1 GB Report
EGAF00002338048 vcf.gz 401.4 MB Report
EGAF00002338049 vcf.gz 3.1 GB Report
EGAF00002338050 vcf.gz 421.2 MB Report
EGAF00002338051 vcf.gz 2.6 GB Report
EGAF00002338052 vcf.gz 354.5 MB Report
EGAF00002338053 vcf.gz 2.3 GB Report
EGAF00002338054 vcf.gz 335.0 MB Report
EGAF00002338055 vcf.gz 3.4 GB Report
EGAF00002338056 vcf.gz 440.0 MB Report
EGAF00002338057 vcf.gz 4.4 GB Report
EGAF00002338058 vcf.gz 574.0 MB Report
EGAF00002338059 vcf.gz 1.6 GB Report
EGAF00002338060 vcf.gz 166.3 MB Report
EGAF00002338061 vcf.gz 715.5 MB Report
EGAF00002338062 vcf.gz 98.9 MB Report
EGAF00002338063 vcf.gz 1.7 GB Report
EGAF00002338064 vcf.gz 196.0 MB Report
EGAF00002338065 vcf.gz 5.9 GB Report
EGAF00002338066 vcf.gz 722.8 MB Report
EGAF00002338067 vcf.gz 4.4 GB Report
EGAF00002338068 vcf.gz 494.4 MB Report
EGAF00002338069 vcf.gz 927.0 MB Report
EGAF00002338070 vcf.gz 119.9 MB Report
EGAF00002338071 vcf.gz 3.7 GB Report
EGAF00002338072 vcf.gz 434.5 MB Report
EGAF00002338073 vcf.gz 3.1 GB Report
EGAF00002338074 vcf.gz 332.4 MB Report
EGAF00002338075 vcf.gz 2.1 GB Report
EGAF00002338076 vcf.gz 259.4 MB Report
EGAF00002338077 vcf.gz 2.1 GB Report
EGAF00002338078 vcf.gz 268.4 MB Report
EGAF00002338079 vcf.gz 1.1 GB Report
EGAF00002338080 vcf.gz 153.4 MB Report
EGAF00002338081 vcf.gz 3.3 GB Report
EGAF00002338082 vcf.gz 461.6 MB Report
EGAF00002338083 vcf.gz 3.8 GB Report
EGAF00002338084 vcf.gz 428.3 MB Report
EGAF00002338085 vcf.gz 2.5 GB Report
EGAF00002338086 vcf.gz 313.7 MB Report
EGAF00002338087 txt 609.4 kB
45 Files (68.3 GB)