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Whole-transcriptome sequencing of MPN patients and controls.

This dataset contains whole-transcriptome sequencing data of 113 myeloproliferative neoplasms (MPN) patients and 15 controls. Patients were diagnosed with essential thrombocythemia, polycythemia vera, primary myelofibrosis, and secondary acute myeloid leukemia. The data were pooled from 5 different sequencing experiments as indicated using an Illumina HiSeq2000 machine. All samples were sequenced paired-end. Sequenced samples were processed with custom workflows for discovery of fusion genes, SNVs and Indels calling, and identification of splicing abnormalities.

Request Access

DUO:0000014
version: 2019-01-07

research use only

This data use limitation indicates that use is limited to research purposes (e.g., does not include its use in clinical care).

DUO:0000018
version: 2019-01-07

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000019
version: 2019-01-07

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000028
version: 2019-01-07

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

This agreement governs the terms on which access will be granted on the transcriptome sequence data that have been generated in the transcriptome study of patients with myeloproliferative neoplasms (MPNtranscriptome). These data are provided by the CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences and Medical University of Vienna. They are made available through the European Genome-phenome Archive (EGA). In signing this agreement, You are agreeing to be bound by the terms and conditions of access set out in this agreement. The terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your”.

Definitions: * Data means all and any human genetic data (including genome, epigenome, transcriptome, and other large-scale data types and derived data) and phenotype data obtained from the EGA. * Data Subject means a person whose data is being shared with informed consent / ethical approval by the relevant ethics commission or institutional review board. * Data Provider means the CeMM Research Centre for Molecular Medicine of the Austrian Academy of Sciences as well as the Medical University of Vienna. * EGA means the European Genome-phenome Archive, a permanent archive of controlled access data generated for biomedical research and deposited to enable data sharing. The EGA is described on the website http://www.ebi.ac.ukl/ega. * User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. * User Institution means the organisation at which the User is employed, affiliated or enrolled. Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for research in the areas of biology and medicine. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy 3. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 4. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and a new approval. 5. You accept that the providers and the funders of the Data or any part of the Data: a. bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b. accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 6. You understand that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media may not be permitted. 7. You accept that this agreement will terminate immediately upon any breach of this agreement by You. Upon termination You will be required to promptly destroy any Data held. 8. You accept that it may be necessary for the Data Provider or its appointed agents to alter the terms of this agreement from time to time in order to address new concerns. In this event, the EGA or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 9. You accept that the Data may be protected by and subject to laws and regulations, including but not limited to applicable laws on the protection of personal data, and that You are responsible for ensuring compliance with any such applicable law. You undertake to implement or have implemented adequate technical and organizational security measures to protect the Data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003486 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00002390717 bam 8.0 GB Report
EGAF00002390718 bam 6.1 GB Report
EGAF00002390719 bam 4.9 GB Report
EGAF00002390720 bam 2.6 GB Report
EGAF00002390721 bam 5.1 GB Report
EGAF00002390722 bam 4.6 GB Report
EGAF00002390723 bam 6.1 GB Report
EGAF00002390724 bam 6.6 GB Report
EGAF00002390725 bam 4.1 GB Report
EGAF00002390726 bam 3.9 GB Report
EGAF00002390727 bam 6.1 GB Report
EGAF00002390728 bam 5.8 GB Report
EGAF00002390729 bam 5.7 GB Report
EGAF00002390730 bam 6.1 GB Report
EGAF00002390731 bam 5.2 GB Report
EGAF00002390732 bam 5.4 GB Report
EGAF00002390733 bam 4.3 GB Report
EGAF00002390734 bam 5.4 GB Report
EGAF00002390735 bam 4.6 GB Report
EGAF00002390736 bam 6.0 GB Report
EGAF00002390737 bam 6.8 GB Report
EGAF00002390738 bam 4.4 GB Report
EGAF00002390739 bam 5.9 GB Report
EGAF00002390740 bam 4.9 GB Report
EGAF00002390741 bam 4.9 GB Report
EGAF00002390742 bam 4.1 GB Report
EGAF00002390743 bam 5.3 GB Report
EGAF00002390744 bam 4.6 GB Report
EGAF00002390745 bam 5.1 GB Report
EGAF00002390746 bam 7.9 GB Report
EGAF00002390747 bam 4.6 GB Report
EGAF00002390748 bam 4.3 GB Report
EGAF00002390749 bam 4.9 GB Report
EGAF00002390750 bam 4.8 GB Report
EGAF00002390751 bam 4.4 GB Report
EGAF00002390752 bam 4.4 GB Report
EGAF00002390753 bam 5.7 GB Report
EGAF00002390754 bam 5.6 GB Report
EGAF00002390755 bam 4.1 GB Report
EGAF00002390756 bam 5.4 GB Report
EGAF00002390757 bam 5.7 GB Report
EGAF00002390758 bam 5.3 GB Report
EGAF00002390759 bam 4.9 GB Report
EGAF00002390760 bam 5.9 GB Report
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EGAF00002390762 bam 5.8 GB Report
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EGAF00002390767 bam 3.5 GB Report
EGAF00002390768 bam 6.7 GB Report
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EGAF00002390772 bam 4.8 GB
EGAF00002390772 bam 4.8 GB Report
EGAF00002390773 bam 4.2 GB Report
EGAF00002390774 bam 6.4 GB Report
EGAF00002390775 bam 3.9 GB Report
EGAF00002390776 bam 4.5 GB Report
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EGAF00002390789 bam 5.3 GB Report
EGAF00002390790 bam 5.6 GB Report
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EGAF00002390792 bam 5.3 GB Report
EGAF00002390793 bam 7.3 GB Report
EGAF00002390794 bam 4.9 GB Report
EGAF00002390795 bam 4.0 GB Report
EGAF00002390796 bam 4.8 GB Report
EGAF00002390797 bam 4.3 GB Report
EGAF00002390798 bam 4.7 GB Report
EGAF00002390799 bam 4.2 GB Report
EGAF00002390800 bam 3.9 GB Report
EGAF00002390801 bam 4.3 GB Report
EGAF00002390802 bam 5.0 GB Report
EGAF00002390803 bam 3.9 GB Report
EGAF00002390804 bam 5.5 GB Report
EGAF00002390805 bam 3.2 GB Report
EGAF00002390806 bam 3.8 GB Report
EGAF00002390807 bam 3.1 GB Report
EGAF00002390808 bam 7.1 GB Report
EGAF00002390809 bam 6.6 GB Report
EGAF00002390810 bam 4.2 GB Report
EGAF00002390811 bam 5.3 GB Report
EGAF00002390812 bam 5.0 GB Report
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EGAF00002390814 bam 5.2 GB Report
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EGAF00002390816 bam 6.6 GB Report
EGAF00002390817 bam 4.5 GB Report
EGAF00002390818 bam 6.1 GB Report
EGAF00002390819 bam 5.8 GB Report
EGAF00002390820 bam 4.4 GB Report
EGAF00002390821 bam 5.7 GB Report
EGAF00002390822 bam 6.0 GB Report
EGAF00002390823 bam 7.6 GB Report
EGAF00002390824 bam 4.2 GB Report
EGAF00002390825 bam 4.2 GB Report
EGAF00002390826 bam 4.8 GB Report
EGAF00002390827 bam 4.6 GB Report
EGAF00002390828 bam 4.2 GB Report
EGAF00002390829 bam 4.8 GB Report
EGAF00002390830 bam 4.0 GB Report
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EGAF00002390837 bam 4.7 GB Report
EGAF00002390838 bam 6.2 GB Report
EGAF00002390839 bam 5.2 GB Report
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EGAF00002390841 bam 5.8 GB Report
EGAF00002390842 bam 5.2 GB Report
EGAF00002390843 bam 5.4 GB Report
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EGAF00002390845 bam 5.3 GB Report
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EGAF00002390852 bam 8.8 GB Report
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EGAF00002390870 bam 7.3 GB Report
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EGAF00002390872 bam 4.0 GB Report
EGAF00002390873 bam 4.9 GB Report
EGAF00002390874 bam 4.3 GB Report
EGAF00002390875 bam 4.7 GB Report
EGAF00002390876 bam 5.2 GB Report
EGAF00002390877 bam 3.8 GB Report
EGAF00002390878 bam 5.3 GB Report
EGAF00002390879 bam 5.5 GB Report
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EGAF00002390882 bam 4.0 GB Report
EGAF00002390883 bam 4.2 GB Report
EGAF00002390884 bam 4.7 GB Report
EGAF00002390885 bam 4.1 GB Report
EGAF00002390886 bam 11.4 GB Report
EGAF00002390887 bam 4.5 GB Report
EGAF00002390888 bam 4.5 GB Report
EGAF00002390889 bam 5.1 GB Report
EGAF00002390890 bam 5.0 GB Report
EGAF00002390891 bam 5.8 GB Report
EGAF00002390892 bam 7.6 GB Report
EGAF00002390893 bam 6.0 GB Report
EGAF00002390894 bam 4.9 GB Report
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EGAF00002390896 bam 3.9 GB Report
EGAF00002390897 bam 4.8 GB Report
EGAF00002390898 bam 4.3 GB Report
EGAF00002390899 bam 6.4 GB Report
EGAF00002390900 bam 4.1 GB Report
EGAF00002390901 bam 4.5 GB Report
EGAF00002390902 bam 7.2 GB Report
EGAF00002390903 bam 4.5 GB Report
EGAF00002390904 bam 8.6 GB Report
EGAF00002390905 bam 5.6 GB Report
EGAF00002390906 bam 7.7 GB Report
EGAF00002390907 bam 4.9 GB Report
EGAF00002390908 bam 6.1 GB Report
EGAF00002390909 bam 5.9 GB Report
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EGAF00002390931 bam 3.9 GB Report
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EGAF00002390937 bam 3.9 GB Report
EGAF00002390938 bam 3.3 GB Report
EGAF00002390939 bam 3.4 GB Report
EGAF00002390940 bam 4.0 GB Report
EGAF00002390941 bam 4.0 GB Report
EGAF00002390942 bam 3.0 GB Report
EGAF00002390943 bam 2.7 GB Report
EGAF00002390944 bam 3.5 GB Report
EGAF00002390945 bam 2.8 GB Report
EGAF00002390946 bam 2.8 GB Report
EGAF00002390947 bam 4.0 GB Report
EGAF00002390948 bam 3.9 GB Report
EGAF00002390949 bam 3.0 GB Report
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EGAF00002390951 bam 3.5 GB Report
EGAF00002390952 bam 2.9 GB Report
EGAF00002390953 bam 2.8 GB Report
EGAF00002390954 bam 3.7 GB Report
EGAF00002390955 bam 4.1 GB Report
EGAF00002390956 bam 2.6 GB Report
EGAF00002390957 bam 3.9 GB Report
EGAF00002390958 bam 2.9 GB Report
EGAF00002390959 bam 2.6 GB Report
EGAF00002390960 bam 3.7 GB Report
EGAF00002390961 bam 4.2 GB Report
EGAF00002390962 bam 2.6 GB Report
EGAF00002390963 bam 3.9 GB Report
EGAF00002390964 bam 2.9 GB Report
EGAF00002390965 bam 2.6 GB Report
EGAF00002390966 bam 1.4 GB Report
EGAF00002390967 bam 2.2 GB Report
EGAF00002390968 bam 1.7 GB Report
EGAF00002390969 bam 2.0 GB Report
EGAF00002390970 bam 1.7 GB Report
EGAF00002390971 bam 3.0 GB Report
EGAF00002390972 bam 2.0 GB Report
EGAF00002390973 bam 1.6 GB Report
EGAF00002390974 bam 1.7 GB Report
EGAF00002390975 bam 2.0 GB Report
EGAF00002390976 bam 3.1 GB Report
EGAF00002390977 bam 2.4 GB Report
EGAF00002390978 bam 2.8 GB Report
EGAF00002390979 bam 2.4 GB Report
EGAF00002390980 bam 4.2 GB Report
EGAF00002390981 bam 2.9 GB Report
EGAF00002390982 bam 2.2 GB Report
EGAF00002390983 bam 2.4 GB Report
EGAF00002390984 bam 1.8 GB Report
EGAF00002390985 bam 2.9 GB Report
EGAF00002390986 bam 2.3 GB Report
EGAF00002390987 bam 2.6 GB Report
EGAF00002390988 bam 2.2 GB Report
EGAF00002390989 bam 3.9 GB Report
EGAF00002390990 bam 2.7 GB Report
EGAF00002390991 bam 2.0 GB Report
EGAF00002390992 bam 2.2 GB Report
EGAF00002390993 bam 8.3 GB Report
EGAF00002390994 bam 8.1 GB Report
EGAF00002390995 bam 6.3 GB Report
EGAF00002390996 bam 9.4 GB Report
EGAF00002390997 bam 8.5 GB Report
282 Files (1.3 TB)