Comparison of 3 protocols for deriving pancreatic progenitors from hPSCs (RNA-seq)
This dataset contains 26 mapped bam files. The samples were generated with 3 different protocols for deriving pancreatic progenitors from hPSC. Three parallel differentiations were performed, all done in a hPSC NKX6.1-GFP reporter line. For each protocol there are three cellular populations: total (presort), GFP+ and GFP- . In summary: 3 differentiations x 3 protocols x 3 cellular populations. We prepared Smart-Seq2 RNA-seq libraries for the 27 samples, 1 sample failed library preparation and is not therefore included in this dataset.
- 06/03/2019
- 26 samples
- DAC: EGAC00001000818
- Technology: Illumina HiSeq 4000
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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001003513 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00002403050 | bam | 3.5 GB | Report |
|
| EGAF00002403051 | bam | 3.7 GB | Report |
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| EGAF00002403052 | bam | 3.2 GB | Report |
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| EGAF00002403053 | bam | 3.3 GB | Report |
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| EGAF00002403054 | bam | 3.7 GB | Report |
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| EGAF00002403055 | bam | 3.4 GB | Report |
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| EGAF00002403056 | bam | 3.2 GB | Report |
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| EGAF00002403057 | bam | 3.5 GB | Report |
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| EGAF00002403058 | bam | 3.2 GB | Report |
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| EGAF00002403059 | bam | 3.1 GB | Report |
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| EGAF00002403060 | bam | 3.3 GB | Report |
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| EGAF00002403061 | bam | 3.3 GB | Report |
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| EGAF00002403062 | bam | 3.3 GB | Report |
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| EGAF00002403063 | bam | 3.3 GB | Report |
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| EGAF00002403064 | bam | 3.2 GB | Report |
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| EGAF00002403065 | bam | 3.2 GB | Report |
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| EGAF00002403066 | bam | 3.3 GB | Report |
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| EGAF00002403067 | bam | 3.5 GB | Report |
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| EGAF00002403068 | bam | 3.2 GB | Report |
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| EGAF00002403069 | bam | 3.2 GB | Report |
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| EGAF00002403070 | bam | 3.5 GB | Report |
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| EGAF00002403071 | bam | 3.2 GB | Report |
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| EGAF00002403072 | bam | 3.2 GB | Report |
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| EGAF00002403073 | bam | 3.5 GB | Report |
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| EGAF00002403074 | bam | 3.3 GB | Report |
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| EGAF00002403075 | bam | 3.2 GB | Report |
|
| 26 Files (86.5 GB) | ||||