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Whole Mitochondrial DNA sequencing of Gingivo-buccal Cancer : ICGC-India Project

This dataset pertains to mitochondrial DNA amplicon sequencing of paired DNA samples from gingivo-buccal oral cancer patients. DNA was isolated from the tumor and blood tissues of 89 patients (178 samples). The sequencing libraries were prepared from whole mitochondrial amplicons using Nextera XT DNA Library Preparation Kit (Illumina) and sequenced in Illumina HiSeq platform. The uploaded BAM files are generated by aligning paired-end reads to the mitochondrial reference sequence (rCRS) using BWA-MEM.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002425 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001592173 bam 121.0 MB
EGAF00001592174 bam 131.9 MB
EGAF00001592175 bam 362.5 MB
EGAF00001592176 bam 292.9 MB
EGAF00001592177 bam 305.7 MB
EGAF00001592178 bam 378.3 MB
EGAF00001592179 bam 166.3 MB
EGAF00001592180 bam 183.7 MB
EGAF00001592181 bam 169.8 MB
EGAF00001592182 bam 214.1 MB
EGAF00001592183 bam 158.1 MB
EGAF00001592184 bam 164.6 MB
EGAF00001592185 bam 208.8 MB
EGAF00001592186 bam 160.0 MB
EGAF00001592187 bam 165.0 MB
EGAF00001592188 bam 199.8 MB
EGAF00001592189 bam 199.7 MB
EGAF00001592190 bam 156.7 MB
EGAF00001592191 bam 181.7 MB
EGAF00001592192 bam 167.6 MB
EGAF00001592193 bam 128.5 MB
EGAF00001592194 bam 145.2 MB
EGAF00001592195 bam 186.8 MB
EGAF00001592196 bam 196.6 MB
EGAF00001592197 bam 166.0 MB
EGAF00001592198 bam 165.4 MB
EGAF00001592199 bam 53.9 MB
EGAF00001592200 bam 117.5 MB
EGAF00001592201 bam 198.1 MB
EGAF00001592202 bam 156.9 MB
EGAF00001592203 bam 60.8 MB
EGAF00001592204 bam 96.5 MB
EGAF00001592205 bam 190.1 MB
EGAF00001592206 bam 174.9 MB
EGAF00001592207 bam 120.9 MB
EGAF00001592208 bam 85.9 MB
EGAF00001592209 bam 132.2 MB
EGAF00001592210 bam 168.0 MB
EGAF00001592211 bam 57.9 MB
EGAF00001592212 bam 159.7 MB
EGAF00001592213 bam 204.1 MB
EGAF00001592214 bam 161.8 MB
EGAF00001592215 bam 160.3 MB
EGAF00001592216 bam 223.3 MB
EGAF00001592217 bam 194.1 MB
EGAF00001592218 bam 204.7 MB
EGAF00001592219 bam 146.5 MB
EGAF00001592220 bam 162.4 MB
EGAF00001592221 bam 202.9 MB
EGAF00001592222 bam 145.0 MB
EGAF00001592223 bam 206.3 MB
EGAF00001592224 bam 182.2 MB
EGAF00001592225 bam 125.4 MB
EGAF00001592226 bam 111.4 MB
EGAF00001592227 bam 208.4 MB
EGAF00001592228 bam 149.9 MB
EGAF00001592229 bam 177.6 MB
EGAF00001592230 bam 109.5 MB
EGAF00001592231 bam 239.9 MB
EGAF00001592232 bam 149.3 MB
EGAF00001592233 bam 173.9 MB
EGAF00001592234 bam 217.9 MB
EGAF00001592235 bam 171.9 MB
EGAF00001592236 bam 228.1 MB
EGAF00001592237 bam 343.8 MB
EGAF00001592238 bam 380.1 MB
EGAF00001592239 bam 212.8 MB
EGAF00001592240 bam 230.3 MB
EGAF00001592241 bam 191.6 MB
EGAF00001592242 bam 261.5 MB
EGAF00001592243 bam 154.8 MB
EGAF00001592244 bam 171.4 MB
EGAF00001592245 bam 380.2 MB
EGAF00001592246 bam 391.9 MB
EGAF00001592247 bam 217.0 MB
EGAF00001592248 bam 179.3 MB
EGAF00001592249 bam 199.7 MB
EGAF00001592250 bam 158.4 MB
EGAF00001592251 bam 223.9 MB
EGAF00001592252 bam 232.1 MB
EGAF00001592253 bam 130.4 MB
EGAF00001592254 bam 141.8 MB
EGAF00001592255 bam 167.1 MB
EGAF00001592256 bam 91.8 MB
EGAF00001592257 bam 185.3 MB
EGAF00001592258 bam 58.2 MB
EGAF00001592259 bam 41.1 MB
EGAF00001592260 bam 225.0 MB
EGAF00001592261 bam 53.2 MB
EGAF00001592262 bam 67.1 MB
EGAF00001592263 bam 130.2 MB
EGAF00001592264 bam 42.9 MB
EGAF00001592265 bam 90.8 MB
EGAF00001592266 bam 100.5 MB
EGAF00001592267 bam 159.7 MB
EGAF00001592268 bam 134.1 MB
EGAF00001592269 bam 113.9 MB
EGAF00001592270 bam 241.1 MB
EGAF00001592271 bam 184.6 MB
EGAF00001592272 bam 215.0 MB
EGAF00001592273 bam 126.7 MB
EGAF00001592274 bam 172.9 MB
EGAF00001592275 bam 124.6 MB
EGAF00001592276 bam 190.7 MB
EGAF00001592277 bam 98.1 MB
EGAF00001592278 bam 130.9 MB
EGAF00001592279 bam 202.8 MB
EGAF00001592280 bam 212.0 MB
EGAF00001592281 bam 167.7 MB
EGAF00001592282 bam 178.8 MB
EGAF00001592283 bam 131.4 MB
EGAF00001592284 bam 79.6 MB
EGAF00001592285 bam 110.9 MB
EGAF00001592286 bam 155.0 MB
EGAF00001592287 bam 165.5 MB
EGAF00001592288 bam 195.2 MB
EGAF00001592289 bam 122.1 MB
EGAF00001592290 bam 148.1 MB
EGAF00001592291 bam 169.0 MB
EGAF00001592292 bam 222.3 MB
EGAF00001592293 bam 122.0 MB
EGAF00001592294 bam 176.3 MB
EGAF00001592295 bam 182.1 MB
EGAF00001592296 bam 199.8 MB
EGAF00001592297 bam 137.2 MB
EGAF00001592298 bam 186.5 MB
EGAF00001592299 bam 100.3 MB
EGAF00001592300 bam 195.0 MB
EGAF00001592301 bam 139.1 MB
EGAF00001592302 bam 169.4 MB
EGAF00001592303 bam 248.9 MB
EGAF00001592304 bam 33.1 MB
EGAF00001592305 bam 182.6 MB
EGAF00001592306 bam 66.1 MB
EGAF00001592307 bam 234.4 MB
EGAF00001592308 bam 77.5 MB
EGAF00001592309 bam 252.9 MB
EGAF00001592310 bam 26.4 MB
EGAF00001592311 bam 183.6 MB
EGAF00001592312 bam 59.3 MB
EGAF00001592313 bam 238.7 MB
EGAF00001592314 bam 60.5 MB
EGAF00001592315 bam 213.2 MB
EGAF00001592316 bam 52.2 MB
EGAF00001592317 bam 373.6 MB
EGAF00001592318 bam 79.6 MB
EGAF00001592319 bam 119.7 MB
EGAF00001592320 bam 40.4 MB
EGAF00001592321 bam 303.5 MB
EGAF00001592322 bam 51.3 MB
EGAF00001592323 bam 184.5 MB
EGAF00001592324 bam 78.4 MB
EGAF00001592325 bam 156.1 MB
EGAF00001592326 bam 76.0 MB
EGAF00001592327 bam 649.9 MB
EGAF00001592328 bam 92.6 MB
EGAF00001592329 bam 401.2 MB
EGAF00001592330 bam 48.6 MB
EGAF00001592331 bam 390.7 MB
EGAF00001592332 bam 115.5 MB
EGAF00001592333 bam 200.1 MB
EGAF00001592334 bam 49.0 MB
EGAF00001592335 bam 177.4 MB
EGAF00001592336 bam 63.8 MB
EGAF00001592337 bam 435.7 MB
EGAF00001592338 bam 81.1 MB
EGAF00001592339 bam 240.9 MB
EGAF00001592340 bam 97.9 MB
EGAF00001592341 bam 350.7 MB
EGAF00001592342 bam 44.4 MB
EGAF00001592343 bam 234.6 MB
EGAF00001592344 bam 185.7 MB
EGAF00001592345 bam 207.4 MB
EGAF00001592346 bam 69.3 MB
EGAF00001592347 bam 179.0 MB
EGAF00001592348 bam 36.2 MB
EGAF00001592349 bam 211.0 MB
EGAF00001592350 bam 68.0 MB
178 Files (30.3 GB)