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Dataset of RNA-sequencing of childhood acute myeloid leukemia

This dataset includes 139 bam files of mRNA sequencing. All subjects are tumor samples of pediatric acute myeloid leukemia.

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Data access policy of RNA sequencing of childhood acute myeloid leukemia

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Department of Pathology and Tumor Biology, Kyoto University Data Access Committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Department of Pathology and Tumor Biology, Kyoto University and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Department of Pathology and Tumor Biology, Kyoto University Data Access Committee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Department of Pathology and Tumor Biology, Kyoto University Data Access Committee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Department of Pathology and Tumor Biology, Kyoto University Data Access Committee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Department of Pathology and Tumor Biology, Kyoto University Data Access Committee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Department of Pathology and Tumor Biology, Kyoto University. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Japan and shall be subject to the exclusive jurisdiction of the Japanese courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003701 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00002490715 bam 9.3 GB Report
EGAF00002490716 bam 7.7 GB Report
EGAF00002490717 bam 7.3 GB Report
EGAF00002490718 bam 8.1 GB Report
EGAF00002490719 bam 7.9 GB Report
EGAF00002490720 bam 7.4 GB Report
EGAF00002490721 bam 8.0 GB Report
EGAF00002490722 bam 8.7 GB Report
EGAF00002490723 bam 6.0 GB Report
EGAF00002490724 bam 10.0 GB Report
EGAF00002490725 bam 7.2 GB Report
EGAF00002490726 bam 8.9 GB Report
EGAF00002490727 bam 10.8 GB Report
EGAF00002490728 bam 8.8 GB Report
EGAF00002490729 bam 9.1 GB Report
EGAF00002490730 bam 7.8 GB Report
EGAF00002490731 bam 8.6 GB Report
EGAF00002490732 bam 7.9 GB Report
EGAF00002490733 bam 7.8 GB Report
EGAF00002490734 bam 7.5 GB Report
EGAF00002490735 bam 7.9 GB Report
EGAF00002490736 bam 4.4 GB Report
EGAF00002490737 bam 4.5 GB Report
EGAF00002490738 bam 6.0 GB Report
EGAF00002490739 bam 7.6 GB Report
EGAF00002490740 bam 5.4 GB Report
EGAF00002490741 bam 6.8 GB Report
EGAF00002490742 bam 8.6 GB Report
EGAF00002490743 bam 9.6 GB Report
EGAF00002490744 bam 7.1 GB Report
EGAF00002490745 bam 9.7 GB Report
EGAF00002490746 bam 5.6 GB Report
EGAF00002490747 bam 9.4 GB Report
EGAF00002490748 bam 6.0 GB Report
EGAF00002490749 bam 5.6 GB Report
EGAF00002490750 bam 8.3 GB Report
EGAF00002490751 bam 5.0 GB Report
EGAF00002490752 bam 5.8 GB Report
EGAF00002490753 bam 5.4 GB Report
EGAF00002490754 bam 8.0 GB Report
EGAF00002490755 bam 5.7 GB Report
EGAF00002490756 bam 6.3 GB Report
EGAF00002490757 bam 6.8 GB Report
EGAF00002490758 bam 7.0 GB Report
EGAF00002490759 bam 7.2 GB Report
EGAF00002490760 bam 6.7 GB Report
EGAF00002490761 bam 4.8 GB Report
EGAF00002490762 bam 7.9 GB Report
EGAF00002490763 bam 7.1 GB Report
EGAF00002490764 bam 7.9 GB Report
EGAF00002490765 bam 7.3 GB Report
EGAF00002490766 bam 8.1 GB Report
EGAF00002490767 bam 6.7 GB Report
EGAF00002490768 bam 7.0 GB Report
EGAF00002490769 bam 8.5 GB Report
EGAF00002490770 bam 5.6 GB Report
EGAF00002490771 bam 4.9 GB Report
EGAF00002490772 bam 8.5 GB Report
EGAF00002490773 bam 6.3 GB Report
EGAF00002490774 bam 6.2 GB Report
EGAF00002490775 bam 4.5 GB Report
EGAF00002490776 bam 4.3 GB Report
EGAF00002490777 bam 4.3 GB Report
EGAF00002490778 bam 5.5 GB Report
EGAF00002490779 bam 4.9 GB Report
EGAF00002490780 bam 5.5 GB Report
EGAF00002490781 bam 5.6 GB Report
EGAF00002490782 bam 7.9 GB Report
EGAF00002490783 bam 8.6 GB Report
EGAF00002490784 bam 8.1 GB Report
EGAF00002490785 bam 7.9 GB Report
EGAF00002490786 bam 5.2 GB Report
EGAF00002490787 bam 7.8 GB Report
EGAF00002490788 bam 8.9 GB Report
EGAF00002490789 bam 9.3 GB Report
EGAF00002490790 bam 7.5 GB Report
EGAF00002490791 bam 7.8 GB Report
EGAF00002490792 bam 9.1 GB Report
EGAF00002490793 bam 7.2 GB Report
EGAF00002490794 bam 10.0 GB Report
EGAF00002490795 bam 4.7 GB Report
EGAF00002490796 bam 7.7 GB Report
EGAF00002490797 bam 8.2 GB Report
EGAF00002490798 bam 11.2 GB Report
EGAF00002490799 bam 6.7 GB Report
EGAF00002490800 bam 6.7 GB Report
EGAF00002490801 bam 9.2 GB Report
EGAF00002490802 bam 9.0 GB Report
EGAF00002490803 bam 8.7 GB Report
EGAF00002490804 bam 6.4 GB Report
EGAF00002490805 bam 6.7 GB Report
EGAF00002490806 bam 8.8 GB Report
EGAF00002490807 bam 7.1 GB Report
EGAF00002490808 bam 7.3 GB Report
EGAF00002490809 bam 8.8 GB Report
EGAF00002490810 bam 8.4 GB Report
EGAF00002490811 bam 6.1 GB Report
EGAF00002490812 bam 7.9 GB Report
EGAF00002490813 bam 7.7 GB Report
EGAF00002490814 bam 8.0 GB Report
EGAF00002490815 bam 8.2 GB Report
EGAF00002490816 bam 8.8 GB Report
EGAF00002490817 bam 7.9 GB Report
EGAF00002490818 bam 9.8 GB Report
EGAF00002490819 bam 8.1 GB Report
EGAF00002490820 bam 5.2 GB Report
EGAF00002490821 bam 8.3 GB Report
EGAF00002490822 bam 8.7 GB Report
EGAF00002490823 bam 5.1 GB Report
EGAF00002490824 bam 7.5 GB Report
EGAF00002490825 bam 8.7 GB Report
EGAF00002490826 bam 7.8 GB Report
EGAF00002490827 bam 7.8 GB Report
EGAF00002490828 bam 8.2 GB Report
EGAF00002490829 bam 7.8 GB Report
EGAF00002490830 bam 7.4 GB Report
EGAF00002490831 bam 7.8 GB Report
EGAF00002490832 bam 8.1 GB Report
EGAF00002490833 bam 6.8 GB Report
EGAF00002490834 bam 7.7 GB Report
EGAF00002490835 bam 7.1 GB Report
EGAF00002490836 bam 5.2 GB Report
EGAF00002490837 bam 7.4 GB Report
EGAF00002490838 bam 9.2 GB Report
EGAF00002490839 bam 8.4 GB Report
EGAF00002490840 bam 7.5 GB Report
EGAF00002490841 bam 5.9 GB Report
EGAF00002490842 bam 10.2 GB Report
EGAF00002490843 bam 5.0 GB Report
EGAF00002490844 bam 7.1 GB Report
EGAF00002490845 bam 5.9 GB Report
EGAF00002490846 bam 5.2 GB Report
EGAF00002490847 bam 7.0 GB Report
EGAF00002490848 bam 6.8 GB Report
EGAF00002490849 bam 6.8 GB Report
EGAF00002490850 bam 4.1 GB Report
EGAF00002490851 bam 4.4 GB Report
EGAF00002490852 bam 6.6 GB Report
EGAF00002490853 bam 4.4 GB Report
139 Files (1.0 TB)