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Target-capture sequencing of FFPE tumor samples from patients diagnosed with NKTL

211 NKTL FFPE specimens were screened for somatic mutations using deep targeted capture sequencing. FFPE rolls or slides were extracted using QIAamp DNA FFPE Tissue kit (QIAGEN). The FFPE genomic DNA was treated with NEBNext FFPE DNA Repair Mix and assessed by Quant-it PicoGreen dsDNA Assay Kit (Invitrogen). The library was generated from 10-200 ng DNA with SureSelectXT Low Input Target Enrichment System for Illumina Paired-End Sequencing Library (Agilent Technologies) according to manufacturer’s instructions. RNA based probe was designed with SureDesign (Agilent Technologies) to target-capture 140 genes. Next, the captured libraries were pooled in equimolar concentration and sequenced on Illumina Novaseq 6000 platform with SP or S1 chip.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003828 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002557705 fastq.gz 173.5 MB
EGAF00002557706 fastq.gz 180.4 MB
EGAF00002557707 fastq.gz 59.4 MB
EGAF00002557708 fastq.gz 61.2 MB
EGAF00002557709 fastq.gz 107.9 MB
EGAF00002557710 fastq.gz 112.6 MB
EGAF00002557711 fastq.gz 68.8 MB
EGAF00002557712 fastq.gz 71.2 MB
EGAF00002557713 fastq.gz 99.8 MB
EGAF00002557714 fastq.gz 102.8 MB
EGAF00002557715 fastq.gz 41.1 MB
EGAF00002557716 fastq.gz 43.0 MB
EGAF00002557717 fastq.gz 89.6 MB
EGAF00002557718 fastq.gz 93.6 MB
EGAF00002557719 fastq.gz 63.5 MB
EGAF00002557720 fastq.gz 66.0 MB
EGAF00002557721 fastq.gz 65.8 MB
EGAF00002557722 fastq.gz 68.0 MB
EGAF00002557723 fastq.gz 82.4 MB
EGAF00002557724 fastq.gz 86.2 MB
EGAF00002557725 fastq.gz 69.4 MB
EGAF00002557726 fastq.gz 72.5 MB
EGAF00002557727 fastq.gz 68.7 MB
EGAF00002557728 fastq.gz 71.1 MB
EGAF00002557729 fastq.gz 29.0 MB
EGAF00002557730 fastq.gz 29.7 MB
EGAF00002557731 fastq.gz 68.3 MB
EGAF00002557732 fastq.gz 71.2 MB
EGAF00002557733 fastq.gz 50.8 MB
EGAF00002557734 fastq.gz 52.3 MB
EGAF00002557735 fastq.gz 69.6 MB
EGAF00002557736 fastq.gz 72.1 MB
EGAF00002557737 fastq.gz 59.2 MB
EGAF00002557738 fastq.gz 60.9 MB
EGAF00002557739 fastq.gz 90.0 MB
EGAF00002557740 fastq.gz 94.4 MB
EGAF00002557741 fastq.gz 50.7 MB
EGAF00002557742 fastq.gz 52.1 MB
EGAF00002557743 fastq.gz 52.4 MB
EGAF00002557744 fastq.gz 53.9 MB
EGAF00002557745 fastq.gz 71.4 MB
EGAF00002557746 fastq.gz 73.2 MB
EGAF00002557747 fastq.gz 49.3 MB
EGAF00002557748 fastq.gz 50.7 MB
EGAF00002557749 fastq.gz 30.6 MB
EGAF00002557750 fastq.gz 31.5 MB
EGAF00002557751 fastq.gz 96.1 MB
EGAF00002557752 fastq.gz 99.4 MB
EGAF00002557753 fastq.gz 39.6 MB
EGAF00002557754 fastq.gz 41.4 MB
EGAF00002557755 fastq.gz 104.3 MB
EGAF00002557756 fastq.gz 109.7 MB
EGAF00002557757 fastq.gz 76.7 MB
EGAF00002557758 fastq.gz 80.2 MB
EGAF00002557759 fastq.gz 26.4 MB
EGAF00002557760 fastq.gz 27.1 MB
EGAF00002557761 fastq.gz 116.7 MB
EGAF00002557762 fastq.gz 121.9 MB
EGAF00002557763 fastq.gz 116.9 MB
EGAF00002557764 fastq.gz 123.1 MB
EGAF00002557765 fastq.gz 125.9 MB
EGAF00002557766 fastq.gz 131.0 MB
EGAF00002557767 fastq.gz 137.6 MB
EGAF00002557768 fastq.gz 143.6 MB
EGAF00002557769 fastq.gz 102.1 MB
EGAF00002557770 fastq.gz 107.2 MB
EGAF00002557771 fastq.gz 96.5 MB
EGAF00002557772 fastq.gz 101.9 MB
EGAF00002557773 fastq.gz 95.8 MB
EGAF00002557774 fastq.gz 100.3 MB
EGAF00002557775 fastq.gz 95.9 MB
EGAF00002557776 fastq.gz 98.4 MB
EGAF00002557777 fastq.gz 82.6 MB
EGAF00002557778 fastq.gz 86.9 MB
EGAF00002557779 fastq.gz 82.7 MB
EGAF00002557780 fastq.gz 85.1 MB
EGAF00002557781 fastq.gz 119.4 MB
EGAF00002557782 fastq.gz 126.8 MB
EGAF00002557783 fastq.gz 80.7 MB
EGAF00002557784 fastq.gz 83.2 MB
EGAF00002557785 fastq.gz 93.5 MB
EGAF00002557786 fastq.gz 98.2 MB
EGAF00002557787 fastq.gz 62.1 MB
EGAF00002557788 fastq.gz 64.6 MB
EGAF00002557789 fastq.gz 71.8 MB
EGAF00002557790 fastq.gz 74.0 MB
EGAF00002557791 fastq.gz 100.0 MB
EGAF00002557792 fastq.gz 104.7 MB
EGAF00002557793 fastq.gz 123.1 MB
EGAF00002557794 fastq.gz 127.6 MB
EGAF00002557795 fastq.gz 118.0 MB
EGAF00002557796 fastq.gz 121.5 MB
EGAF00002557797 fastq.gz 88.3 MB
EGAF00002557798 fastq.gz 92.4 MB
EGAF00002557799 fastq.gz 78.5 MB
EGAF00002557800 fastq.gz 81.6 MB
EGAF00002557801 fastq.gz 76.6 MB
EGAF00002557802 fastq.gz 79.4 MB
EGAF00002557803 fastq.gz 86.5 MB
EGAF00002557804 fastq.gz 89.3 MB
EGAF00002557805 fastq.gz 122.8 MB
EGAF00002557806 fastq.gz 129.9 MB
EGAF00002557807 fastq.gz 125.8 MB
EGAF00002557808 fastq.gz 132.6 MB
EGAF00002557809 fastq.gz 98.0 MB
EGAF00002557810 fastq.gz 101.5 MB
EGAF00002557811 fastq.gz 109.4 MB
EGAF00002557812 fastq.gz 113.0 MB
EGAF00002557813 fastq.gz 79.4 MB
EGAF00002557814 fastq.gz 82.8 MB
EGAF00002557815 fastq.gz 90.6 MB
EGAF00002557816 fastq.gz 94.1 MB
EGAF00002557817 fastq.gz 88.5 MB
EGAF00002557818 fastq.gz 91.4 MB
EGAF00002557819 fastq.gz 66.6 MB
EGAF00002557820 fastq.gz 68.1 MB
EGAF00002557821 fastq.gz 58.8 MB
EGAF00002557822 fastq.gz 61.4 MB
EGAF00002557823 fastq.gz 91.4 MB
EGAF00002557824 fastq.gz 94.5 MB
EGAF00002557825 fastq.gz 54.0 MB
EGAF00002557826 fastq.gz 55.5 MB
EGAF00002557827 fastq.gz 56.5 MB
EGAF00002557828 fastq.gz 57.9 MB
EGAF00002557829 fastq.gz 117.2 MB
EGAF00002557830 fastq.gz 122.6 MB
EGAF00002557831 fastq.gz 50.1 MB
EGAF00002557832 fastq.gz 51.3 MB
EGAF00002557833 fastq.gz 67.3 MB
EGAF00002557834 fastq.gz 69.2 MB
EGAF00002557835 fastq.gz 95.3 MB
EGAF00002557836 fastq.gz 98.8 MB
EGAF00002557837 fastq.gz 77.6 MB
EGAF00002557838 fastq.gz 81.4 MB
EGAF00002557839 fastq.gz 49.5 MB
EGAF00002557840 fastq.gz 51.1 MB
EGAF00002557841 fastq.gz 100.0 MB
EGAF00002557842 fastq.gz 105.1 MB
EGAF00002557843 fastq.gz 74.7 MB
EGAF00002557844 fastq.gz 77.2 MB
EGAF00002557845 fastq.gz 67.2 MB
EGAF00002557846 fastq.gz 68.5 MB
EGAF00002557847 fastq.gz 82.0 MB
EGAF00002557848 fastq.gz 84.5 MB
EGAF00002557849 fastq.gz 64.3 MB
EGAF00002557850 fastq.gz 67.7 MB
EGAF00002557851 fastq.gz 86.0 MB
EGAF00002557852 fastq.gz 88.7 MB
EGAF00002557853 fastq.gz 97.7 MB
EGAF00002557854 fastq.gz 100.5 MB
EGAF00002557855 fastq.gz 109.9 MB
EGAF00002557856 fastq.gz 116.0 MB
EGAF00002557857 fastq.gz 94.1 MB
EGAF00002557858 fastq.gz 96.9 MB
EGAF00002557859 fastq.gz 72.4 MB
EGAF00002557860 fastq.gz 75.0 MB
EGAF00002557861 fastq.gz 73.4 MB
EGAF00002557862 fastq.gz 75.6 MB
EGAF00002557863 fastq.gz 81.6 MB
EGAF00002557864 fastq.gz 84.3 MB
EGAF00002557865 fastq.gz 70.2 MB
EGAF00002557866 fastq.gz 72.8 MB
EGAF00002557867 fastq.gz 81.6 MB
EGAF00002557868 fastq.gz 83.8 MB
EGAF00002557869 fastq.gz 101.9 MB
EGAF00002557870 fastq.gz 105.3 MB
EGAF00002557871 fastq.gz 21.6 MB
EGAF00002557872 fastq.gz 22.0 MB
EGAF00002557873 fastq.gz 71.3 MB
EGAF00002557874 fastq.gz 74.2 MB
EGAF00002557875 fastq.gz 49.9 MB
EGAF00002557876 fastq.gz 51.7 MB
EGAF00002557877 fastq.gz 35.8 MB
EGAF00002557878 fastq.gz 36.6 MB
EGAF00002557879 fastq.gz 92.5 MB
EGAF00002557880 fastq.gz 95.5 MB
EGAF00002557881 fastq.gz 70.2 MB
EGAF00002557882 fastq.gz 72.8 MB
EGAF00002557883 fastq.gz 37.7 MB
EGAF00002557884 fastq.gz 38.5 MB
EGAF00002557885 fastq.gz 45.5 MB
EGAF00002557886 fastq.gz 46.9 MB
EGAF00002557887 fastq.gz 15.2 MB
EGAF00002557888 fastq.gz 15.7 MB
EGAF00002557889 fastq.gz 38.5 MB
EGAF00002557890 fastq.gz 40.0 MB
EGAF00002557891 fastq.gz 13.8 MB
EGAF00002557892 fastq.gz 14.1 MB
EGAF00002557893 fastq.gz 53.8 MB
EGAF00002557894 fastq.gz 55.3 MB
EGAF00002557895 fastq.gz 39.8 MB
EGAF00002557896 fastq.gz 40.7 MB
EGAF00002557897 fastq.gz 118.8 MB
EGAF00002557898 fastq.gz 126.2 MB
EGAF00002557899 fastq.gz 107.2 MB
EGAF00002557900 fastq.gz 111.9 MB
EGAF00002557901 fastq.gz 28.7 MB
EGAF00002557902 fastq.gz 29.8 MB
EGAF00002557903 fastq.gz 87.1 MB
EGAF00002557904 fastq.gz 92.0 MB
EGAF00002557905 fastq.gz 51.9 MB
EGAF00002557906 fastq.gz 52.7 MB
EGAF00002557907 fastq.gz 46.6 MB
EGAF00002557908 fastq.gz 47.9 MB
EGAF00002557909 fastq.gz 27.2 MB
EGAF00002557910 fastq.gz 29.9 MB
EGAF00002557911 fastq.gz 94.1 MB
EGAF00002557912 fastq.gz 97.0 MB
EGAF00002557913 fastq.gz 102.5 MB
EGAF00002557914 fastq.gz 106.0 MB
EGAF00002557915 fastq.gz 23.3 MB
EGAF00002557916 fastq.gz 23.8 MB
EGAF00002557917 fastq.gz 57.8 MB
EGAF00002557918 fastq.gz 60.4 MB
EGAF00002557919 fastq.gz 87.6 MB
EGAF00002557920 fastq.gz 91.8 MB
EGAF00002557921 fastq.gz 94.7 MB
EGAF00002557922 fastq.gz 98.7 MB
EGAF00002557923 fastq.gz 42.0 MB
EGAF00002557924 fastq.gz 44.0 MB
EGAF00002557925 fastq.gz 33.9 MB
EGAF00002557926 fastq.gz 34.7 MB
EGAF00002557927 fastq.gz 63.6 MB
EGAF00002557928 fastq.gz 65.4 MB
EGAF00002557929 fastq.gz 55.0 MB
EGAF00002557930 fastq.gz 56.6 MB
EGAF00002557931 fastq.gz 33.6 MB
EGAF00002557932 fastq.gz 34.6 MB
EGAF00002557933 fastq.gz 81.7 MB
EGAF00002557934 fastq.gz 84.7 MB
EGAF00002557935 fastq.gz 33.9 MB
EGAF00002557936 fastq.gz 35.5 MB
EGAF00002557937 fastq.gz 19.4 MB
EGAF00002557938 fastq.gz 19.6 MB
EGAF00002557939 fastq.gz 59.1 MB
EGAF00002557940 fastq.gz 60.4 MB
EGAF00002557941 fastq.gz 64.9 MB
EGAF00002557942 fastq.gz 67.3 MB
EGAF00002557943 fastq.gz 72.2 MB
EGAF00002557944 fastq.gz 74.6 MB
EGAF00002557945 fastq.gz 46.4 MB
EGAF00002557946 fastq.gz 47.1 MB
EGAF00002557947 fastq.gz 39.5 MB
EGAF00002557948 fastq.gz 41.8 MB
EGAF00002557949 fastq.gz 68.8 MB
EGAF00002557950 fastq.gz 71.6 MB
EGAF00002557951 fastq.gz 69.2 MB
EGAF00002557952 fastq.gz 71.4 MB
EGAF00002557953 fastq.gz 66.5 MB
EGAF00002557954 fastq.gz 67.8 MB
EGAF00002557955 fastq.gz 70.2 MB
EGAF00002557956 fastq.gz 71.8 MB
EGAF00002557957 fastq.gz 56.0 MB
EGAF00002557958 fastq.gz 58.1 MB
EGAF00002557959 fastq.gz 79.2 MB
EGAF00002557960 fastq.gz 81.1 MB
EGAF00002557961 fastq.gz 77.1 MB
EGAF00002557962 fastq.gz 80.1 MB
EGAF00002557963 fastq.gz 74.2 MB
EGAF00002557964 fastq.gz 76.5 MB
EGAF00002557965 fastq.gz 21.8 MB
EGAF00002557966 fastq.gz 22.1 MB
EGAF00002557967 fastq.gz 44.0 MB
EGAF00002557968 fastq.gz 44.6 MB
EGAF00002557969 fastq.gz 47.0 MB
EGAF00002557970 fastq.gz 48.3 MB
EGAF00002557971 fastq.gz 32.6 MB
EGAF00002557972 fastq.gz 33.2 MB
EGAF00002557973 fastq.gz 32.2 MB
EGAF00002557974 fastq.gz 32.7 MB
EGAF00002557975 fastq.gz 29.2 MB
EGAF00002557976 fastq.gz 30.0 MB
EGAF00002557977 fastq.gz 53.7 MB
EGAF00002557978 fastq.gz 55.0 MB
EGAF00002557979 fastq.gz 46.1 MB
EGAF00002557980 fastq.gz 47.0 MB
EGAF00002557981 fastq.gz 24.0 MB
EGAF00002557982 fastq.gz 24.3 MB
EGAF00002557983 fastq.gz 43.7 MB
EGAF00002557984 fastq.gz 44.5 MB
EGAF00002557985 fastq.gz 15.9 MB
EGAF00002557986 fastq.gz 16.1 MB
EGAF00002557987 fastq.gz 51.5 MB
EGAF00002557988 fastq.gz 52.0 MB
EGAF00002557989 fastq.gz 57.8 MB
EGAF00002557990 fastq.gz 59.3 MB
EGAF00002557991 fastq.gz 33.8 MB
EGAF00002557992 fastq.gz 34.2 MB
EGAF00002557993 fastq.gz 9.6 MB
EGAF00002557994 fastq.gz 9.6 MB
EGAF00002557995 fastq.gz 52.2 MB
EGAF00002557996 fastq.gz 53.0 MB
EGAF00002557997 fastq.gz 21.1 MB
EGAF00002557998 fastq.gz 21.3 MB
EGAF00002557999 fastq.gz 24.4 MB
EGAF00002558000 fastq.gz 24.7 MB
EGAF00002558001 fastq.gz 48.1 MB
EGAF00002558002 fastq.gz 48.6 MB
EGAF00002558003 fastq.gz 43.1 MB
EGAF00002558004 fastq.gz 43.7 MB
EGAF00002558005 fastq.gz 28.2 MB
EGAF00002558006 fastq.gz 29.0 MB
EGAF00002558007 fastq.gz 36.9 MB
EGAF00002558008 fastq.gz 37.6 MB
EGAF00002558009 fastq.gz 39.2 MB
EGAF00002558010 fastq.gz 40.3 MB
EGAF00002558011 fastq.gz 24.9 MB
EGAF00002558012 fastq.gz 25.3 MB
EGAF00002558013 fastq.gz 50.7 MB
EGAF00002558014 fastq.gz 51.2 MB
EGAF00002558015 fastq.gz 48.5 MB
EGAF00002558016 fastq.gz 49.3 MB
EGAF00002558017 fastq.gz 28.5 MB
EGAF00002558018 fastq.gz 29.3 MB
EGAF00002558019 fastq.gz 57.5 MB
EGAF00002558020 fastq.gz 58.6 MB
EGAF00002558021 fastq.gz 45.1 MB
EGAF00002558022 fastq.gz 45.6 MB
EGAF00002558023 fastq.gz 33.7 MB
EGAF00002558024 fastq.gz 34.6 MB
EGAF00002558025 fastq.gz 20.9 MB
EGAF00002558026 fastq.gz 21.1 MB
EGAF00002558027 fastq.gz 27.8 MB
EGAF00002558028 fastq.gz 28.4 MB
EGAF00002558029 fastq.gz 40.3 MB
EGAF00002558030 fastq.gz 40.7 MB
EGAF00002558031 fastq.gz 49.4 MB
EGAF00002558032 fastq.gz 50.3 MB
EGAF00002558033 fastq.gz 46.9 MB
EGAF00002558034 fastq.gz 48.2 MB
EGAF00002558035 fastq.gz 46.4 MB
EGAF00002558036 fastq.gz 47.5 MB
EGAF00002558037 fastq.gz 93.8 MB
EGAF00002558038 fastq.gz 97.5 MB
EGAF00002558039 fastq.gz 47.9 MB
EGAF00002558040 fastq.gz 49.9 MB
EGAF00002558041 fastq.gz 63.5 MB
EGAF00002558042 fastq.gz 65.8 MB
EGAF00002558043 fastq.gz 44.5 MB
EGAF00002558044 fastq.gz 46.1 MB
EGAF00002558045 fastq.gz 47.5 MB
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EGAF00002558047 fastq.gz 67.5 MB
EGAF00002558048 fastq.gz 69.5 MB
EGAF00002558049 fastq.gz 80.8 MB
EGAF00002558050 fastq.gz 84.9 MB
EGAF00002558051 fastq.gz 51.6 MB
EGAF00002558052 fastq.gz 53.6 MB
EGAF00002558053 fastq.gz 36.3 MB
EGAF00002558054 fastq.gz 37.7 MB
EGAF00002558055 fastq.gz 77.5 MB
EGAF00002558056 fastq.gz 81.5 MB
EGAF00002558057 fastq.gz 35.7 MB
EGAF00002558058 fastq.gz 36.4 MB
EGAF00002558059 fastq.gz 70.1 MB
EGAF00002558060 fastq.gz 72.5 MB
EGAF00002558061 fastq.gz 62.2 MB
EGAF00002558062 fastq.gz 69.0 MB
EGAF00002558063 fastq.gz 37.5 MB
EGAF00002558064 fastq.gz 38.9 MB
EGAF00002558065 fastq.gz 10.6 MB
EGAF00002558066 fastq.gz 10.8 MB
EGAF00002558067 fastq.gz 65.0 MB
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EGAF00002558072 fastq.gz 64.6 MB
EGAF00002558073 fastq.gz 81.7 MB
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EGAF00002558075 fastq.gz 46.2 MB
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EGAF00002558078 fastq.gz 98.2 MB
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EGAF00002637521 fastq.gz 117.5 MB
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EGAF00002637527 fastq.gz 57.8 MB
EGAF00002637528 fastq.gz 114.0 MB
EGAF00002637529 fastq.gz 121.1 MB
EGAF00002637530 fastq.gz 88.8 MB
EGAF00002637531 fastq.gz 95.1 MB
EGAF00002637532 fastq.gz 108.6 MB
EGAF00002637533 fastq.gz 114.9 MB
440 Files (29.4 GB)