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RNA-seq, WGS and WES of Hepatocellular carcinomas, enriched in fibrolamellar carcinomas

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FunGeST - Functional Genomics from cancer research to personalized medicine

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets to which the Data Recipient has requested access. The Data Recipient agrees to be bound by these terms and conditions. Definitions GDPR: This DAA ensures that both parties comply with the Regulation (EU) 2016/679 of the European Parliament and of the Council, known as the General Data Protection Regulation (herein referred to as the ‘GDPR’). Data: Refers to managed controlled access datasets (the Data). Under this Agreement, the Data is pseudonymised. Data Access/Transfer: Refers to an Institution’s right to request access to the Data and retrieve it from the Data Controller’s Institution upon approval of this DAA by the corresponding Data Access Committee (DAC) within the Data Controller’s Institution. Data Handling: Refers to an Institution’s ability to analyse and manipulate the Data within its own computer network. Data Controller(s): The Institution responsible for data generation and pseudonymization. Data Subject: Refers to any individual who is the source of any Data covered by this Agreement. Data Recipient (‘You’): The Institution that requests access to the Data through this Agreement. Authorized Personnel: The individual(s) at the Institution requesting Access to the Data. Research Project: The Project for which You have requested Access to the Data. Publications: Refers, without limitation, to any and all articles published in print journals, electronic journals, reviews, books, posters, and other written and verbal presentations of Research that have been accepted by peer review. FunGeST: This Data Access Agreement (DAA) has been developed for the FunGeST functional genomics projects, with the Centre de Recherche des Cordeliers (CRC) in Paris, France serving as the Data Controller. Terms and Conditions 1. Data Usage: The Data Recipient agrees to use the Data only for the specified Research Project and for research purposes only, not for any profit-making activities. 2. Confidentiality and Data Protection: The Data Recipient commits to maintaining the confidentiality of all information and Data related to Data Subjects, and will neither use nor attempt to use the Data in a way that compromises or violates the confidentiality and privacy of Data Subjects. 3. Data Subject Identification: The Data Recipient will not attempt to identify Data Subjects. 4. Data Linking: The Data Recipient will not link or combine the Data with other information that could re-identify the Data Subjects, even if such information is formally accessible or freely available. 5. Usage Restrictions: The Data Recipient agrees to consider any usage restrictions stemming from consent, applicable laws, or internal policies of their institution. 6. IT Security Measures The Data Recipient agrees to follow an up-to-date IT policy that includes: (a) Logging and auditing access to the Data and the computer network. (b) Password protection and/or strong data encryption. (c) Virus and malware protection. (d) Secure backup procedures. (e) Access control. (f) Incident response. 7. Project Duration: The Data Recipient aknowledges that access to the Data is granted for the duration of the specified Research Project. Any use of the Data for a different project requires prior approval through a new agreement. 8. Intellectual Property: The Data Recipient acknowledges that this agreement does not transfer any intellectual property rights to the Data. The Data Recipient will not assert intellectual property claims over the Data or use intellectual property protections to restrict access or use of any portion of the Data. However, the Data Recipient may conduct additional research that enhances the value of the Data and may obtain intellectual property rights over resulting discoveries, provided that licensing policies align with OECD guidelines and do not impede further research. 9. Legal Responsibility: The Data Recipient acknowledges that the Data Controller bears no legal responsibility for the accuracy or completeness of the Data, and the Data Recipient accepts no liability for any indirect, consequential, or incidental damages or losses arising from the use of the Data. 10. Liability: The Data Recipient agrees to hold harmless the Data Subjects and Data Controllers against any and all liabilities, demands, damages, expenses, and losses arising from the use of the Data. This includes, but is not limited to, any legal claims or financial losses resulting from misuse, breach of confidentiality, or failure to comply with the terms and conditions set forth in this agreement. The Data Recipient acknowledges full responsibility for ensuring the security and proper use of the Data. 11. Publication and Acknowledgement: The Data Recipient agrees that any publications, presentations, or disclosures based on the Data must appropriately cite the Data source. All papers and outputs must include a citation according to the guidelines provided with respective EGAD dataset ID. A list of required citations and acknowledgements will be provided along with the dataset and must be adhered to in all relevant research outputs. (see Section III). 12. Personnel Compliance and Data Confidentiality: The Data Recipient agrees to restrict the use of the Data to their Institution, ensuring that all Authorized Personnel are fully informed of and comply with the terms of this agreement. The Data Recipient will not disclose any information contained in the Data to third parties unless specifically authorized by the Research Project or with written consent from the Data Controllers. The Data Recipient will not transfer the Data outside their Institution without prior written approval from the Data Controllers. If the Data is to be shared with an external collaborator, the collaborator must first enter into a separate Data Access Agreement to obtain access. 13. Security Breach: In case of a security breach resulting from accidental use of Data leading to disclosure, the Data Recipient must report it to the Data Controllers within 72 hours and follow GDPR rules. In case of a non-accidental breach, the Data Recipient must destroy any held Data. 14. Termination: The Data Recipient acknowledges that this agreement will be terminated immediately in the event of any breach by the recipient or upon the termination of the agreement. 15. Dispute Resolution Process: The Data Recipient will make every effort to resolve disputes amicably with the Data Controllers. If a resolution is not reached within 60 days, the matter will be submitted to arbitration, conducted in English unless otherwise agreed, with the arbitration decision being final and binding. 16. Governing Law and Jurisdiction: The Data Recipient agrees that this agreement, along with any related disputes, will be governed by French law and fall under the exclusive jurisdiction of French courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003837 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002558797 bam 4.7 GB
EGAF00002558798 bam 5.1 GB
EGAF00002558799 bam 5.5 GB
EGAF00002558800 bam 5.3 GB
EGAF00002558801 bam 7.4 GB
EGAF00002558802 bam 4.7 GB
EGAF00002558803 bam 5.5 GB
EGAF00002558804 bam 5.2 GB
EGAF00002558805 bam 6.2 GB
EGAF00002558806 bam 3.6 GB
EGAF00002558807 bam 5.8 GB
EGAF00002558808 bam 6.4 GB
EGAF00002558809 bam 8.3 GB
EGAF00002558810 bam 5.2 GB
EGAF00002558811 bam 4.8 GB
EGAF00002558812 bam 8.9 GB
EGAF00002558813 bam 6.7 GB
EGAF00002558814 bam 5.6 GB
EGAF00002558815 bam 3.3 GB
EGAF00002558816 bam 4.8 GB
EGAF00002558817 bam 6.2 GB
EGAF00002558818 bam 4.6 GB
EGAF00002558819 bam 10.5 GB
EGAF00002558820 bam 5.0 GB
EGAF00002558821 bam 8.0 GB
EGAF00002558822 bam 4.3 GB
EGAF00002558823 bam 8.7 GB
EGAF00002558824 bam 8.3 GB
EGAF00002558825 bam 4.6 GB
EGAF00002558826 bam 5.1 GB
EGAF00002558827 bam 5.1 GB
EGAF00002558828 bam 5.5 GB
EGAF00002558829 bam 5.2 GB
EGAF00002558830 bam 6.9 GB
EGAF00002558831 bam 5.0 GB
EGAF00002558832 bam 5.3 GB
EGAF00002558833 bam 4.9 GB
EGAF00002558834 bam 8.7 GB
EGAF00002558835 bam 6.5 GB
EGAF00002558836 bam 5.1 GB
EGAF00002558837 bam 6.2 GB
EGAF00002558838 bam 5.9 GB
EGAF00002558839 bam 4.2 GB
EGAF00002558840 bam 4.6 GB
EGAF00002558841 bam 5.6 GB
EGAF00002558842 bam 5.2 GB
EGAF00002558843 bam 5.4 GB
EGAF00002558844 bam 6.5 GB
EGAF00002558845 bam 6.6 GB
EGAF00002558846 bam 5.1 GB
EGAF00002558847 bam 6.2 GB
EGAF00002558848 bam 5.2 GB
EGAF00002558849 bam 4.6 GB
EGAF00002558850 bam 5.0 GB
EGAF00002558851 bam 6.7 GB
EGAF00002558852 bam 4.1 GB
EGAF00002558853 bam 6.5 GB
EGAF00002558854 bam 5.6 GB
EGAF00002558855 bam 6.5 GB
EGAF00002558856 bam 4.7 GB
EGAF00002558857 bam 6.3 GB
EGAF00002558858 bam 13.0 GB
EGAF00002558859 bam 6.6 GB
EGAF00002558860 bam 7.6 GB
EGAF00002558861 bam 4.8 GB
EGAF00002558862 bam 6.1 GB
EGAF00002558863 bam 4.4 GB
EGAF00002558864 bam 3.8 GB
EGAF00002558865 bam 5.8 GB
EGAF00002558866 bam 5.4 GB
EGAF00002558867 bam 16.2 GB
EGAF00002558868 bam 6.1 GB
EGAF00002558869 bam 16.1 GB
EGAF00002558870 bam 17.6 GB
EGAF00002558871 bam 5.9 GB
EGAF00002558872 bam 5.8 GB
EGAF00002558873 bam 6.0 GB
EGAF00002558874 bam 5.8 GB
EGAF00002558875 bam 7.3 GB
EGAF00002558876 bam 4.9 GB
EGAF00002558877 bam 5.4 GB
EGAF00002558878 bam 3.8 GB
EGAF00002558879 bam 3.0 GB
EGAF00002558880 bam 3.3 GB
EGAF00002558881 bam 3.6 GB
EGAF00002558882 bam 2.6 GB
EGAF00002558883 bam 3.0 GB
EGAF00002558884 bam 3.2 GB
EGAF00002558885 bam 3.1 GB
EGAF00002558886 bam 4.9 GB
EGAF00002558887 bam 3.8 GB
EGAF00002558888 bam 3.1 GB
EGAF00002558889 bam 3.7 GB
EGAF00002558890 bam 2.9 GB
EGAF00002558891 bam 2.7 GB
EGAF00002558892 bam 3.0 GB
EGAF00002558893 bam 5.8 GB
EGAF00002558894 bam 3.3 GB
EGAF00002558895 bam 5.3 GB
EGAF00002558896 bam 2.8 GB
EGAF00002558897 bam 5.8 GB
EGAF00002558898 bam 2.9 GB
EGAF00002558899 bam 6.3 GB
EGAF00002558900 bam 13.7 GB
EGAF00002558901 bam 5.1 GB
EGAF00002558902 bam 4.4 GB
EGAF00002558903 bam 2.6 GB
EGAF00002558904 bam 4.7 GB
EGAF00002558905 bam 2.8 GB
EGAF00002558906 bam 2.2 GB
EGAF00002558907 bam 5.9 GB
EGAF00002558908 bam 2.7 GB
EGAF00002558909 bam 17.4 GB
EGAF00002558910 bam 3.3 GB
EGAF00002558911 bam 16.1 GB
EGAF00002558912 bam 16.2 GB
EGAF00002558913 bam 3.5 GB
EGAF00002558914 bam 3.1 GB
EGAF00002558915 bam 2.6 GB
EGAF00002558916 bam 3.1 GB
EGAF00002558917 bam 5.4 GB
EGAF00002558918 bam 3.1 GB
EGAF00002558919 bam 3.4 GB
EGAF00002558920 bam 385.7 GB
EGAF00002558921 bam 389.7 GB
EGAF00002558922 bam 425.3 GB
EGAF00002558923 bam 134.7 GB
EGAF00002558924 bam 130.3 GB
EGAF00002558925 bam 145.9 GB
EGAF00002558926 bam 5.9 GB
EGAF00002558927 bam 4.9 GB
EGAF00002558928 bam 6.1 GB
EGAF00002558929 bam 4.5 GB
EGAF00002558930 bam 5.3 GB
EGAF00002558931 bam 5.9 GB
EGAF00002558932 bam 5.4 GB
EGAF00002558933 bam 5.4 GB
EGAF00002558934 bam 5.5 GB
EGAF00002558935 bam 4.6 GB
EGAF00002558936 bam 5.0 GB
EGAF00002558937 bam 5.3 GB
EGAF00002558938 bam 5.0 GB
EGAF00002558939 bam 4.8 GB
EGAF00002558940 bam 6.3 GB
EGAF00002558941 bam 6.2 GB
EGAF00002558942 bam 7.6 GB
EGAF00002558943 bam 6.6 GB
EGAF00002558944 bam 5.7 GB
EGAF00002558945 bam 5.9 GB
EGAF00002558946 bam 6.4 GB
EGAF00002558947 bam 6.6 GB
EGAF00002558948 bam 5.8 GB
EGAF00002558949 bam 5.7 GB
EGAF00002558950 bam 5.5 GB
EGAF00002558951 bam 9.9 GB
EGAF00002558952 bam 5.5 GB
EGAF00002558953 bam 5.2 GB
157 Files (2.5 TB)