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RNA-seq, WGS and WES of Hepatocellular carcinomas, enriched in fibrolamellar carcinomas

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DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

FunGeST - Functional Genomics from cancer research to personalized medicine

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets to which the Data Recipient has requested access. The Data Recipient agrees to be bound by these terms and conditions. Definitions GDPR: This DAA ensures that both parties comply with the Regulation (EU) 2016/679 of the European Parliament and of the Council, known as the General Data Protection Regulation (herein referred to as the ‘GDPR’). Data: Data means pseudonymised research data, related metadata and associated documentation provided under this Agreement. Data Access/Transfer: Refers to an Institution’s right to request access to the Data and retrieve it from the Data Controller’s Institution upon approval of this DAA by the corresponding Data Access Committee (DAC) within the Data Controller’s Institution. Data Handling: Refers to an Institution’s ability to analyse and manipulate the Data within its own computer network. Data Controller(s): The Institution responsible for data generation and pseudonymization. Data Subject: Refers to any individual who is the source of any Data covered by this Agreement. Data Recipient (‘You’): The Institution that requests access to the Data through this Agreement. Authorized Personnel: The individual(s) at the Institution requesting Access to the Data. Research Project: The Project for which You have requested Access to the Data. Publications: Refers, without limitation, to any and all articles published in print journals, electronic journals, reviews, books, posters, and other written and verbal presentations of Research that have been accepted by peer review. FunGeST: This Data Access Agreement (DAA) has been developed for the FunGeST functional genomics projects, with the Centre de Recherche des Cordeliers (CRC) in Paris, France serving as the Data Controller. Terms and Conditions 1. Data Usage: The Data Recipient shall use the Data solely for the Research Project identified in this Agreement and strictly for research purposes, and shall not use the Data for any profit-making or commercial activities. 2. Confidentiality and Data Protection: The Data Recipient shall maintain the confidentiality of all information and Data relating to Data Subjects and shall not use the Data in any manner that compromises or violates the confidentiality or privacy of Data Subjects. The Data Recipient shall comply with all applicable data protection laws (including the GDPR and the French Data Protection Act) and the security measures set out in Clause 6. 3. Data Subject No Re-Identification: The Data Recipient shall not attempt to identify any Data Subject. 4. No Data Linking for Re-identification: The Data Recipient shall not link or combine the Data with other information in a way that could (re)identify Data Subjects, even where such other information is formally accessible or publicly available. 5. Usage Restrictions (Consent / Law / Policy): The Data Recipient shall comply with any use restrictions arising from informed consent, applicable law or regulation, and the Recipient’s institutional policies. 6. IT Security Measures: The Data Recipient shall implement and maintain up-to-date technical and organizational measures, including at a minimum: a) logging and auditing access to the Data and networks. b) password protection and/or strong encryption at rest and in transit; c) protection against viruses and malware; d) secure and tested backup procedures; e) role-based access control, least-privilege, and (where available) multi-factor authentication; f) incident response procedures (including containment, eradication, recovery, and post-incident review). 7. Project Duration: Access to the Data is granted only for the duration of the Research Project. Any new or different use requires prior written approval and a separate agreement. 8. Intellectual Property: No intellectual property rights in the Data are transferred under this Agreement. The Data Recipient shall not assert IP rights over the Data or use IP to restrict access to or use of the Data. The Data Recipient may generate results, analyses, or discoveries based on the Data and may seek IP over such results, provided that any licensing aligns with OECD principles and does not impede further academic research. 9. Warranties and Disclaimer: The Data are provided “as is”. The Data Controller makes no representations or warranties (express or implied) as to accuracy, completeness, fitness for a particular purpose, or non-infringement. 10. Liability and Indemnity: To the maximum extent permitted by law, neither Party shall be liable to the other for indirect, consequential, or incidental losses arising from use of the Data. Nothing in this Agreement excludes or limits liability for fraud, wilful misconduct, gross negligence, or breach of applicable data protection law. The Data Recipient remains responsible for its use of the Data and shall indemnify and hold harmless the Data Controller and Data Subjects from losses and claims arising from the Recipient’s breach of this Agreement, misuse of the Data, or violation of law. 11. Publication and Acknowledgement: The Data Recipient agrees that any publications, presentations, or disclosures based on the Data must appropriately cite the Data source. All papers or outputs must include the citations/acknowledgements specified for the relevant EGAD dataset ID. The list of required citations and acknowledgements will be provided along with the dataset and must be followed. 12. Personnel Compliance and Data Confidentiality: Use of the Data is restricted to the Data Recipient’s Institution and Authorized Personnel who are informed of and comply with this Agreement. The Data Recipient shall not disclose Data to third parties except where expressly permitted by the Research Project or with the Data Controller’s prior written consent. The Data shall not be transferred outside the Institution without prior written approval. External collaborators must first enter into a separate Data Access Agreement. 13. Amendments: No modification or waiver of this Agreement is valid unless in writing and signed by duly authorized representatives of both Parties. 14. Security Incidents: In the event of a personal-data breach or security incident affecting the Data, the Data Recipient shall notify the Data Controller without undue delay and in any event within 72 hours of becoming aware, provide all relevant information, cooperate in containment and remediation, and maintain appropriate records. The notification shall include: (i) a description of the nature of the incident, (ii) categories and approximate number of data subjects and records concerned, (iii) likely consequences, (iv) measures taken or proposed to address the incident, and (v) a contact point for further information (e.g., the Recipient’s DPO). Notifications shall be sent to: Jessica.zucman-rossi@inserm.fr. 15. Termination and Post-Termination Duties: This Agreement may be terminated immediately for material breach, or upon completion or termination of the Research Project. Upon termination or expiry, the Data Recipient shall cease all use of the Data and, at the Data Controller’s option, securely delete or return the Data and all copies, subject to mandatory retention laws. Within 30 days of termination or expiry, the Data Recipient shall return or securely destroy all Data and certify destruction in writing (name, role, date, method), unless retention is required by mandatory law (and then only for the minimum period and securely archived). Clauses 2–6, 8–12, 14–18 survive termination. 16. Use of Name and Logos: Neither Party shall use the other’s name, trademarks, or logos in any publicity, or advertising, or news release without prior written approval. Each Party may disclose factual information about the existence and purpose of this Agreement, provided such statements are accurate, describe the relationship of the parties and do not imply endorsement. 17. Dispute Resolution; Urgent Relief: The Parties shall first seek to resolve disputes amicably within 60 days of written notice. Nothing in this clause prevents either Party from seeking urgent injunctive or equitable relief in any court of competent jurisdiction. 18. Governing Law and Jurisdiction: This Agreement, and any non-contractual obligations arising out of or in connection with it, shall be governed by and construed in accordance with the laws of France. The courts of Paris, France shall have exclusive jurisdiction to settle any dispute arising out of or in connection with this Agreement. 19. Cross‑Border Data Transfers: Any transfer of Data outside the EU/EEA or the UK shall rely on appropriate safeguards under applicable law (including EU Standard Contractual Clauses and/or the UK IDTA/Addendum, as applicable). The Data Recipient shall not engage any subprocessor or external service provider for Data hosting or processing without the Data Controller’s prior written consent and a written agreement imposing security and confidentiality obligations no less protective than this Agreement. 20. Boilerplate 20.1 Entire Agreement. This Agreement constitutes the entire agreement between the Parties with respect to its subject matter and supersedes all prior understandings. 20.2 Severability. If any provision is held invalid or unenforceable, the remainder shall continue in full force and effect. 20.3 Assignment. Neither Party may assign this Agreement without the other Party’s prior written consent, except to a successor in connection with a merger or reorganization that assumes all obligations herein. 20.4 Notices. Notices under this Agreement shall be in writing and delivered by email and/or registered mail to the notice contacts most recently notified in writing by each Party to the other. Each Party’s initial notice details shall be those specified in the Section I or in the signature block. Either Party may update its notice details by written notice; such update is effective upon receipt. 20.5 Governing Language. If this Agreement is translated, the English version shall prevail.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003837 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00002558797 bam 4.7 GB
EGAF00002558798 bam 5.1 GB
EGAF00002558799 bam 5.5 GB
EGAF00002558800 bam 5.3 GB
EGAF00002558801 bam 7.4 GB
EGAF00002558802 bam 4.7 GB
EGAF00002558803 bam 5.5 GB
EGAF00002558804 bam 5.2 GB
EGAF00002558805 bam 6.2 GB
EGAF00002558806 bam 3.6 GB
EGAF00002558807 bam 5.8 GB
EGAF00002558808 bam 6.4 GB
EGAF00002558809 bam 8.3 GB
EGAF00002558810 bam 5.2 GB
EGAF00002558811 bam 4.8 GB
EGAF00002558812 bam 8.9 GB
EGAF00002558813 bam 6.7 GB
EGAF00002558814 bam 5.6 GB
EGAF00002558815 bam 3.3 GB
EGAF00002558816 bam 4.8 GB
EGAF00002558817 bam 6.2 GB
EGAF00002558818 bam 4.6 GB
EGAF00002558819 bam 10.5 GB
EGAF00002558820 bam 5.0 GB
EGAF00002558821 bam 8.0 GB
EGAF00002558822 bam 4.3 GB
EGAF00002558823 bam 8.7 GB
EGAF00002558824 bam 8.3 GB
EGAF00002558825 bam 4.6 GB
EGAF00002558826 bam 5.1 GB
EGAF00002558827 bam 5.1 GB
EGAF00002558828 bam 5.5 GB
EGAF00002558829 bam 5.2 GB
EGAF00002558830 bam 6.9 GB
EGAF00002558831 bam 5.0 GB
EGAF00002558832 bam 5.3 GB
EGAF00002558833 bam 4.9 GB
EGAF00002558834 bam 8.7 GB
EGAF00002558835 bam 6.5 GB Report
EGAF00002558836 bam 5.1 GB Report
EGAF00002558837 bam 6.2 GB Report
EGAF00002558838 bam 5.9 GB Report
EGAF00002558839 bam 4.2 GB Report
EGAF00002558840 bam 4.6 GB Report
EGAF00002558841 bam 5.6 GB Report
EGAF00002558842 bam 5.2 GB Report
EGAF00002558843 bam 5.4 GB Report
EGAF00002558844 bam 6.5 GB Report
EGAF00002558845 bam 6.6 GB Report
EGAF00002558846 bam 5.1 GB Report
EGAF00002558847 bam 6.2 GB Report
EGAF00002558848 bam 5.2 GB Report
EGAF00002558849 bam 4.6 GB Report
EGAF00002558850 bam 5.0 GB Report
EGAF00002558851 bam 6.7 GB Report
EGAF00002558852 bam 4.1 GB Report
EGAF00002558853 bam 6.5 GB Report
EGAF00002558854 bam 5.6 GB Report
EGAF00002558855 bam 6.5 GB Report
EGAF00002558856 bam 4.7 GB Report
EGAF00002558857 bam 6.3 GB Report
EGAF00002558858 bam 13.0 GB Report
EGAF00002558859 bam 6.6 GB Report
EGAF00002558860 bam 7.6 GB Report
EGAF00002558861 bam 4.8 GB Report
EGAF00002558862 bam 6.1 GB Report
EGAF00002558863 bam 4.4 GB Report
EGAF00002558864 bam 3.8 GB Report
EGAF00002558865 bam 5.8 GB Report
EGAF00002558866 bam 5.4 GB Report
EGAF00002558867 bam 16.2 GB Report
EGAF00002558868 bam 6.1 GB Report
EGAF00002558869 bam 16.1 GB Report
EGAF00002558870 bam 17.6 GB Report
EGAF00002558871 bam 5.9 GB Report
EGAF00002558872 bam 5.8 GB Report
EGAF00002558873 bam 6.0 GB Report
EGAF00002558874 bam 5.8 GB Report
EGAF00002558875 bam 7.3 GB Report
EGAF00002558876 bam 4.9 GB Report
EGAF00002558877 bam 5.4 GB Report
EGAF00002558878 bam 3.8 GB Report
EGAF00002558879 bam 3.0 GB Report
EGAF00002558880 bam 3.3 GB Report
EGAF00002558881 bam 3.6 GB Report
EGAF00002558882 bam 2.6 GB Report
EGAF00002558883 bam 3.0 GB Report
EGAF00002558884 bam 3.2 GB Report
EGAF00002558885 bam 3.1 GB Report
EGAF00002558886 bam 4.9 GB Report
EGAF00002558887 bam 3.8 GB Report
EGAF00002558888 bam 3.1 GB Report
EGAF00002558889 bam 3.7 GB Report
EGAF00002558890 bam 2.9 GB Report
EGAF00002558891 bam 2.7 GB Report
EGAF00002558892 bam 3.0 GB Report
EGAF00002558893 bam 5.8 GB Report
EGAF00002558894 bam 3.3 GB Report
EGAF00002558895 bam 5.3 GB Report
EGAF00002558896 bam 2.8 GB Report
EGAF00002558897 bam 5.8 GB Report
EGAF00002558898 bam 2.9 GB Report
EGAF00002558899 bam 6.3 GB Report
EGAF00002558900 bam 13.7 GB Report
EGAF00002558901 bam 5.1 GB Report
EGAF00002558902 bam 4.4 GB Report
EGAF00002558903 bam 2.6 GB Report
EGAF00002558904 bam 4.7 GB Report
EGAF00002558905 bam 2.8 GB Report
EGAF00002558906 bam 2.2 GB Report
EGAF00002558907 bam 5.9 GB Report
EGAF00002558908 bam 2.7 GB Report
EGAF00002558909 bam 17.4 GB Report
EGAF00002558910 bam 3.3 GB Report
EGAF00002558911 bam 16.1 GB Report
EGAF00002558912 bam 16.2 GB Report
EGAF00002558913 bam 3.5 GB Report
EGAF00002558914 bam 3.1 GB Report
EGAF00002558915 bam 2.6 GB Report
EGAF00002558916 bam 3.1 GB Report
EGAF00002558917 bam 5.4 GB Report
EGAF00002558918 bam 3.1 GB Report
EGAF00002558919 bam 3.4 GB Report
EGAF00002558920 bam 385.7 GB Report
EGAF00002558921 bam 389.7 GB Report
EGAF00002558922 bam 425.3 GB
EGAF00002558923 bam 134.7 GB Report
EGAF00002558924 bam 130.3 GB Report
EGAF00002558925 bam 145.9 GB Report
EGAF00002558926 bam 5.9 GB
EGAF00002558927 bam 4.9 GB
EGAF00002558928 bam 6.1 GB
EGAF00002558929 bam 4.5 GB
EGAF00002558930 bam 5.3 GB
EGAF00002558931 bam 5.9 GB
EGAF00002558932 bam 5.4 GB
EGAF00002558933 bam 5.4 GB
EGAF00002558934 bam 5.5 GB
EGAF00002558935 bam 4.6 GB
EGAF00002558936 bam 5.0 GB
EGAF00002558937 bam 5.3 GB
EGAF00002558938 bam 5.0 GB
EGAF00002558939 bam 4.8 GB
EGAF00002558940 bam 6.3 GB
EGAF00002558941 bam 6.2 GB
EGAF00002558942 bam 7.6 GB
EGAF00002558943 bam 6.6 GB
EGAF00002558944 bam 5.7 GB
EGAF00002558945 bam 5.9 GB
EGAF00002558946 bam 6.4 GB
EGAF00002558947 bam 6.6 GB
EGAF00002558948 bam 5.8 GB
EGAF00002558949 bam 5.7 GB
EGAF00002558950 bam 5.5 GB
EGAF00002558951 bam 9.9 GB
EGAF00002558952 bam 5.5 GB
EGAF00002558953 bam 5.2 GB
157 Files (2.5 TB)