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Whole genome sequencing of osteosarcoma from patients seen at UT MD Anderson Cancer Center.

Whole genome sequencing of 35 osteosarcoma patients (primary, relapsed, and metastatic) with matched normals. Tumors were sequenced at target 60X and matched normals at target 30X.

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UT MD Anderson Cancer Center Department of Genomic Medicine Data Access Agreement

DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”), effective as of the ____ day of _________________, 20__ (“Effective Date”), is by and between The University of Texas M. D. Anderson Cancer Center, an institution of The University of Texas System and an agency of the State of Texas, with an address at 1515 Holcombe Boulevard, Houston, Texas 77030 (“Provider”), and ________________________________ (“Recipient”) on behalf of its investigator _______ (“Recipient Investigator”) (collectively, the “Parties”; each, a “Party”). RECITALS Provider maintains the following de-identified data in the European Genome-phenome Archive (EGA) managed by the European Bioinformatics Institute ________________ (“Data”), and Provider is willing to allow Recipient to access such Data from the EGA for the internal noncommercial research purposes of _______________ (“Purpose”), pursuant to the terms of this Agreement. In consideration of the mutual promises and covenants herein, and for other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, the Parties agree as follows: 1. The Data will be used solely for the Research by Recipient Investigator at Recipient, and may not be transferred to any other investigator or to any third party without prior written permission from Provider. The Material may not be used for any purpose other than the Research, including without limitation for any commercial purpose or for research in human subjects (including, without limitation, in diagnostic testing). 2. Neither Recipient nor Recipient Investigator shall disclose Data to any person or party other than the Recipient Investigator hereunder without Provider’s prior written consent. 3. The Data will be used in compliance with all applicable laws, regulations, and guidelines applicable to the Data, including without limitation any applicable export controls. 4. In any publication resulting from use of the Data, Recipient and Recipient Investigator shall acknowledge Department of Genomic Medicine (“Provider Investigator”) and Provider as the provider of the Data. 5. This Agreement shall be effective as of the Effective Date and shall remain effective until completion of the Research. Either Party may terminate this Agreement with or without cause upon thirty (30) days’ written notice to the other Party. Upon expiration or termination of this Agreement for any reason, Recipient shall destroy all Data received pursuant to this Agreement. 6. Any notice permitted or required as provided for herein shall be in writing and to the contact and address as noted below or as may be provided by either party to the other in writing from time to time. Notice to Provider shall be to: Chief Legal Officer The University of Texas M. D. Anderson Cancer Center 7007 Bertner Ave., 1MC11.3433, Suite 1674 Houston, Texas 77030 Phone: 713-745-6633; Facsimile: 713-745-6029 With a copy to: The University of Texas M. D. Anderson Cancer Center 2 1515 Holcombe Blvd., FCT 8.5025 Office of Research Administration Attn: Executive Director, Research Administration Houston, TX 77030 Phone: 713-792-3672; Facsimile: 713-792-7455 Notice to Recipient shall be to: [insert] 7. In the event Protected Health Information (“PHI”), as defined by the federal Health Insurance Portability and Accountability Act of 1996 (“HIPAA”), as amended, is inadvertently created, accessed by, and/or disclosed to Recipient in connection with this Agreement, Recipient will immediately notify the Provider and will return to Provider or destroy such PHI, in accordance with the Provider’s instructions. Pending return or destruction of any PHI, Recipient shall maintain the confidentiality of all Data (including the PHI) and use appropriate safeguards to prevent access to, use, or disclosure of Data (including the PHI). 8. PROVIDER MAKES NO REPRESENTATION OR WARRANTY CONCERNING THE MATERIAL, INCLUDING WITHOUT LIMITATION, WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. 9. Recipient Investigator and Recipient accept all liability for any use of the Data and for any loss, claim, or damage which may arise from or in connection with this Agreement or the use, handling or storage of the Data and in no event shall Provider or Provider Investigator be liable for any such use, loss, claim or damage. [Insert Recipient Name Here] THE UNIVERSITY OF TEXAS M. D. ANDERSON CANCER CENTER By: By: Name: Name: Title: Title: Date: Date: Read and Understood: Recipient Scientist: Provider Scientist: [Insert Name and Title Here] [Insert Name and Title Here] Date: Date:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003887 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002795832 bam 177.4 GB
EGAF00002795833 bam 177.7 GB
EGAF00002795834 bam 183.9 GB
EGAF00002795835 bam 173.2 GB
EGAF00002795836 bam 181.9 GB
EGAF00002795837 bam 177.3 GB
EGAF00002795838 bam 189.8 GB
EGAF00002795839 bam 181.9 GB
EGAF00002795840 bam 174.8 GB
EGAF00002795841 bam 185.5 GB
EGAF00002795842 bam 172.8 GB
EGAF00002795843 bam 166.1 GB
EGAF00002795844 bam 176.9 GB
EGAF00002795845 bam 174.0 GB
EGAF00002795846 bam 163.7 GB
EGAF00002795847 bam 180.2 GB
EGAF00002795848 bam 185.9 GB
EGAF00002795849 bam 190.9 GB
EGAF00002795850 bam 188.6 GB
EGAF00002795851 bam 172.7 GB
EGAF00002795852 bam 178.1 GB
EGAF00002795853 bam 177.6 GB
EGAF00002795854 bam 174.2 GB
EGAF00002795855 bam 181.7 GB
EGAF00002795856 bam 187.8 GB
EGAF00002795857 bam 182.7 GB
EGAF00002795858 bam 180.7 GB
EGAF00002795859 bam 180.9 GB
EGAF00002795860 bam 175.3 GB
EGAF00002795861 bam 191.1 GB
EGAF00002795862 bam 184.7 GB
EGAF00002795863 bam 358.6 GB
EGAF00002795864 bam 379.9 GB
EGAF00002795865 bam 360.0 GB
EGAF00002795866 bam 353.4 GB
EGAF00002795867 bam 358.6 GB
EGAF00002795868 bam 362.9 GB
EGAF00002795869 bam 359.8 GB
EGAF00002795870 bam 343.0 GB
EGAF00002795871 bam 328.6 GB
EGAF00002795872 bam 359.2 GB
EGAF00002795873 bam 368.3 GB
EGAF00002795874 bam 328.3 GB
EGAF00002795875 bam 377.2 GB
EGAF00002795876 bam 340.1 GB
EGAF00002795877 bam 346.0 GB
EGAF00002795878 bam 357.2 GB
EGAF00002795879 bam 326.7 GB
EGAF00002795880 bam 333.2 GB
EGAF00002795881 bam 340.9 GB
EGAF00002795882 bam 359.9 GB
EGAF00002795883 bam 365.0 GB
EGAF00002795884 bam 349.1 GB
EGAF00002795885 bam 346.5 GB
EGAF00002795886 bam 351.8 GB
EGAF00002795887 bam 341.8 GB
EGAF00002795888 bam 386.8 GB
EGAF00002795889 bam 358.1 GB
EGAF00002795890 bam 343.2 GB
EGAF00002795891 bam 366.5 GB
EGAF00002795892 bam 371.4 GB
EGAF00002795893 bam 361.5 GB
EGAF00002795894 bam 359.9 GB
EGAF00002795895 bam 334.0 GB
EGAF00002795896 bam 353.0 GB
EGAF00002795897 bam 378.4 GB
EGAF00002795898 bam 199.1 GB
EGAF00002795899 bam 191.4 GB
EGAF00002795900 bam 468.1 GB
EGAF00002799055 bam 173.5 GB
EGAF00002799056 bam 180.2 GB
EGAF00002799057 bam 364.7 GB
72 Files (19.6 TB)