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EFFORT occupationally exposed human stool metagenomes (148 samples)

Metagenomes of stool samples from 54 pig farmers, 24 broiler farmers and 70 slaughter line workers. Note: Access to the data will only be granted for antibiotic resistance studies in accordance with the EFFORT consents issued by the participants.

Request Access

Access to the data is restricted to antibiotic resistance research.

Data can only be used for research on antibiotic resistance, cannot be used for commercial purposes. Before access to the data is granted, a data access agreement needs to be signed with Utrecht University in which the terms for usage, storage and destruction of the data are described: https://survey.uu.nl/jfe/form/SV_8IVD1kndpZDhcMt. In all cases, also, appropriate references should be made to the original data / description of the data in “Van Gompel et al., 2020, Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: a metagenome-wide cross-sectional study, Environment International, 143, 105393. doi: https://doi.org/10.1016/j.envint.2020.105939.”

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003944 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002830467 fastq.gz 3.7 GB
EGAF00002830468 fastq.gz 4.5 GB
EGAF00002830545 fastq.gz 3.6 GB
EGAF00002830546 fastq.gz 4.3 GB
EGAF00002830549 fastq.gz 3.7 GB
EGAF00002830550 fastq.gz 4.6 GB
EGAF00002830555 fastq.gz 3.8 GB
EGAF00002830556 fastq.gz 4.6 GB
EGAF00002830559 fastq.gz 3.6 GB
EGAF00002830560 fastq.gz 4.4 GB
EGAF00002830563 fastq.gz 3.7 GB
EGAF00002830564 fastq.gz 4.6 GB
EGAF00002830567 fastq.gz 3.7 GB
EGAF00002830568 fastq.gz 4.4 GB
EGAF00002830569 fastq.gz 4.2 GB
EGAF00002830570 fastq.gz 4.9 GB
EGAF00002830573 fastq.gz 3.8 GB
EGAF00002830574 fastq.gz 4.7 GB
EGAF00002830575 fastq.gz 5.4 GB
EGAF00002830576 fastq.gz 6.7 GB
EGAF00002830577 fastq.gz 3.8 GB
EGAF00002830578 fastq.gz 4.7 GB
EGAF00002830579 fastq.gz 3.8 GB
EGAF00002830580 fastq.gz 4.6 GB
EGAF00002830581 fastq.gz 3.7 GB
EGAF00002830582 fastq.gz 4.5 GB
EGAF00002830583 fastq.gz 4.5 GB
EGAF00002830584 fastq.gz 5.3 GB
EGAF00002830585 fastq.gz 3.5 GB
EGAF00002830586 fastq.gz 4.3 GB
EGAF00002830587 fastq.gz 3.6 GB
EGAF00002830588 fastq.gz 4.5 GB
EGAF00002830589 fastq.gz 3.9 GB
EGAF00002830590 fastq.gz 4.7 GB
EGAF00002830591 fastq.gz 3.6 GB
EGAF00002830592 fastq.gz 4.5 GB
EGAF00002830593 fastq.gz 4.2 GB
EGAF00002830594 fastq.gz 5.2 GB
EGAF00002830595 fastq.gz 4.0 GB
EGAF00002830596 fastq.gz 5.1 GB
EGAF00002830597 fastq.gz 3.6 GB
EGAF00002830598 fastq.gz 4.3 GB
EGAF00002830599 fastq.gz 3.8 GB
EGAF00002830600 fastq.gz 4.8 GB
EGAF00002830601 fastq.gz 3.7 GB
EGAF00002830602 fastq.gz 4.3 GB
EGAF00002830603 fastq.gz 3.5 GB
EGAF00002830604 fastq.gz 4.2 GB
EGAF00002830605 fastq.gz 4.3 GB
EGAF00002830606 fastq.gz 5.3 GB
EGAF00002830607 fastq.gz 4.0 GB
EGAF00002830608 fastq.gz 4.8 GB
EGAF00002830609 fastq.gz 3.7 GB
EGAF00002830610 fastq.gz 4.5 GB
EGAF00002830611 fastq.gz 3.6 GB
EGAF00002830612 fastq.gz 4.4 GB
EGAF00002830613 fastq.gz 3.7 GB
EGAF00002830614 fastq.gz 4.5 GB
EGAF00002830615 fastq.gz 3.5 GB
EGAF00002830616 fastq.gz 4.3 GB
EGAF00002830617 fastq.gz 4.3 GB
EGAF00002830618 fastq.gz 5.2 GB
EGAF00002830619 fastq.gz 3.6 GB
EGAF00002830620 fastq.gz 4.4 GB
EGAF00002830621 fastq.gz 3.8 GB
EGAF00002830622 fastq.gz 4.6 GB
EGAF00002830623 fastq.gz 4.0 GB
EGAF00002830624 fastq.gz 4.8 GB
EGAF00002830625 fastq.gz 3.5 GB
EGAF00002830626 fastq.gz 4.3 GB
EGAF00002830627 fastq.gz 3.8 GB
EGAF00002830628 fastq.gz 4.8 GB
EGAF00002830629 fastq.gz 4.3 GB
EGAF00002830630 fastq.gz 5.3 GB
EGAF00002830631 fastq.gz 3.1 GB
EGAF00002830632 fastq.gz 3.8 GB
EGAF00002830633 fastq.gz 3.6 GB
EGAF00002830634 fastq.gz 4.4 GB
EGAF00002830635 fastq.gz 3.6 GB
EGAF00002830636 fastq.gz 4.5 GB
EGAF00002830637 fastq.gz 3.5 GB
EGAF00002830638 fastq.gz 4.4 GB
EGAF00002830639 fastq.gz 3.7 GB
EGAF00002830640 fastq.gz 4.6 GB
EGAF00002830641 fastq.gz 4.5 GB
EGAF00002830642 fastq.gz 5.6 GB
EGAF00002830643 fastq.gz 3.5 GB
EGAF00002830644 fastq.gz 4.3 GB
EGAF00002830645 fastq.gz 3.7 GB
EGAF00002830646 fastq.gz 4.7 GB
EGAF00002830647 fastq.gz 3.7 GB
EGAF00002830648 fastq.gz 4.5 GB
EGAF00002830649 fastq.gz 4.4 GB
EGAF00002830650 fastq.gz 5.5 GB
EGAF00002830651 fastq.gz 4.7 GB
EGAF00002830652 fastq.gz 5.8 GB
EGAF00002830653 fastq.gz 4.4 GB
EGAF00002830654 fastq.gz 5.4 GB
EGAF00002830655 fastq.gz 3.6 GB
EGAF00002830656 fastq.gz 4.4 GB
EGAF00002830657 fastq.gz 3.7 GB
EGAF00002830658 fastq.gz 4.5 GB
EGAF00002830659 fastq.gz 3.7 GB
EGAF00002830660 fastq.gz 4.6 GB
EGAF00002830661 fastq.gz 3.6 GB
EGAF00002830662 fastq.gz 4.4 GB
EGAF00002830663 fastq.gz 4.2 GB
EGAF00002830664 fastq.gz 5.1 GB
EGAF00002830665 fastq.gz 3.8 GB
EGAF00002830666 fastq.gz 4.5 GB
EGAF00002830667 fastq.gz 4.7 GB
EGAF00002830668 fastq.gz 5.8 GB
EGAF00002830669 fastq.gz 3.6 GB
EGAF00002830670 fastq.gz 4.5 GB
EGAF00002830671 fastq.gz 3.8 GB
EGAF00002830672 fastq.gz 4.8 GB
EGAF00002830673 fastq.gz 4.8 GB
EGAF00002830674 fastq.gz 5.4 GB
EGAF00002830675 fastq.gz 4.2 GB
EGAF00002830676 fastq.gz 5.3 GB
EGAF00002830677 fastq.gz 4.5 GB
EGAF00002830678 fastq.gz 5.6 GB
EGAF00002830679 fastq.gz 3.6 GB
EGAF00002830680 fastq.gz 4.3 GB
EGAF00002830681 fastq.gz 4.5 GB
EGAF00002830682 fastq.gz 5.5 GB
EGAF00002830683 fastq.gz 3.6 GB
EGAF00002830684 fastq.gz 4.4 GB
EGAF00002830685 fastq.gz 3.8 GB
EGAF00002830686 fastq.gz 4.6 GB
EGAF00002830687 fastq.gz 3.8 GB
EGAF00002830688 fastq.gz 4.7 GB
EGAF00002830689 fastq.gz 3.7 GB
EGAF00002830690 fastq.gz 4.6 GB
EGAF00002830691 fastq.gz 3.7 GB
EGAF00002830692 fastq.gz 4.5 GB
EGAF00002830693 fastq.gz 3.9 GB
EGAF00002830694 fastq.gz 4.8 GB
EGAF00002830695 fastq.gz 3.6 GB
EGAF00002830696 fastq.gz 4.3 GB
EGAF00002830697 fastq.gz 3.8 GB
EGAF00002830698 fastq.gz 4.5 GB
EGAF00002830699 fastq.gz 4.1 GB
EGAF00002830700 fastq.gz 4.0 GB
EGAF00002830701 fastq.gz 3.5 GB
EGAF00002830702 fastq.gz 4.4 GB
EGAF00002830703 fastq.gz 3.9 GB
EGAF00002830704 fastq.gz 4.7 GB
EGAF00002830705 fastq.gz 3.8 GB
EGAF00002830706 fastq.gz 4.7 GB
EGAF00002830707 fastq.gz 3.7 GB
EGAF00002830708 fastq.gz 4.6 GB
EGAF00002830709 fastq.gz 3.8 GB
EGAF00002830710 fastq.gz 4.7 GB
EGAF00002830711 fastq.gz 3.9 GB
EGAF00002830712 fastq.gz 4.8 GB
EGAF00002830713 fastq.gz 4.0 GB
EGAF00002830714 fastq.gz 4.9 GB
EGAF00002830715 fastq.gz 3.7 GB
EGAF00002830716 fastq.gz 4.5 GB
EGAF00002830717 fastq.gz 4.0 GB
EGAF00002830718 fastq.gz 4.9 GB
EGAF00002830719 fastq.gz 4.5 GB
EGAF00002830720 fastq.gz 5.4 GB
EGAF00002830721 fastq.gz 3.9 GB
EGAF00002830722 fastq.gz 4.8 GB
EGAF00002830723 fastq.gz 3.8 GB
EGAF00002830724 fastq.gz 4.6 GB
EGAF00002830725 fastq.gz 3.7 GB
EGAF00002830726 fastq.gz 4.5 GB
EGAF00002830727 fastq.gz 3.7 GB
EGAF00002830728 fastq.gz 4.6 GB
EGAF00002830729 fastq.gz 3.7 GB
EGAF00002830730 fastq.gz 4.5 GB
EGAF00002830731 fastq.gz 3.6 GB
EGAF00002830732 fastq.gz 4.4 GB
EGAF00002830733 fastq.gz 3.8 GB
EGAF00002830734 fastq.gz 4.6 GB
EGAF00002830735 fastq.gz 4.5 GB
EGAF00002830736 fastq.gz 5.5 GB
EGAF00002830737 fastq.gz 3.8 GB
EGAF00002830738 fastq.gz 4.6 GB
EGAF00002830739 fastq.gz 3.8 GB
EGAF00002830740 fastq.gz 4.7 GB
EGAF00002830741 fastq.gz 3.5 GB
EGAF00002830742 fastq.gz 4.4 GB
EGAF00002830743 fastq.gz 3.6 GB
EGAF00002830744 fastq.gz 4.5 GB
EGAF00002830745 fastq.gz 3.7 GB
EGAF00002830746 fastq.gz 4.6 GB
EGAF00002830747 fastq.gz 3.6 GB
EGAF00002830748 fastq.gz 4.4 GB
EGAF00002830749 fastq.gz 3.6 GB
EGAF00002830750 fastq.gz 4.4 GB
EGAF00002830751 fastq.gz 6.5 GB
EGAF00002830752 fastq.gz 6.3 GB
EGAF00002830753 fastq.gz 3.8 GB
EGAF00002830754 fastq.gz 4.7 GB
EGAF00002830755 fastq.gz 3.6 GB
EGAF00002830756 fastq.gz 4.4 GB
EGAF00002830757 fastq.gz 3.8 GB
EGAF00002830758 fastq.gz 4.6 GB
EGAF00002830759 fastq.gz 3.8 GB
EGAF00002830760 fastq.gz 4.8 GB
EGAF00002830761 fastq.gz 4.0 GB
EGAF00002830762 fastq.gz 4.9 GB
EGAF00002830763 fastq.gz 4.7 GB
EGAF00002830764 fastq.gz 5.9 GB
EGAF00002830765 fastq.gz 3.9 GB
EGAF00002830766 fastq.gz 4.7 GB
EGAF00002830767 fastq.gz 4.9 GB
EGAF00002830768 fastq.gz 6.0 GB
EGAF00002830769 fastq.gz 4.4 GB
EGAF00002830770 fastq.gz 5.4 GB
EGAF00002830771 fastq.gz 3.7 GB
EGAF00002830772 fastq.gz 4.5 GB
EGAF00002830773 fastq.gz 4.7 GB
EGAF00002830774 fastq.gz 5.9 GB
EGAF00002830775 fastq.gz 3.6 GB
EGAF00002830776 fastq.gz 4.5 GB
EGAF00002830777 fastq.gz 4.1 GB
EGAF00002830778 fastq.gz 5.0 GB
EGAF00002830779 fastq.gz 4.9 GB
EGAF00002830780 fastq.gz 6.1 GB
EGAF00002830781 fastq.gz 4.3 GB
EGAF00002830782 fastq.gz 5.3 GB
EGAF00002830783 fastq.gz 4.8 GB
EGAF00002830784 fastq.gz 6.1 GB
EGAF00002830785 fastq.gz 4.9 GB
EGAF00002830786 fastq.gz 6.1 GB
EGAF00002830787 fastq.gz 3.9 GB
EGAF00002830788 fastq.gz 4.8 GB
EGAF00002830789 fastq.gz 4.3 GB
EGAF00002830790 fastq.gz 5.2 GB
EGAF00002830791 fastq.gz 4.2 GB
EGAF00002830792 fastq.gz 5.1 GB
EGAF00002830793 fastq.gz 4.8 GB
EGAF00002830794 fastq.gz 5.9 GB
EGAF00002830795 fastq.gz 4.3 GB
EGAF00002830796 fastq.gz 5.3 GB
EGAF00002830797 fastq.gz 4.7 GB
EGAF00002830798 fastq.gz 5.8 GB
EGAF00002830799 fastq.gz 3.5 GB
EGAF00002830800 fastq.gz 4.4 GB
EGAF00002830801 fastq.gz 4.1 GB
EGAF00002830802 fastq.gz 5.0 GB
EGAF00002830803 fastq.gz 4.1 GB
EGAF00002830804 fastq.gz 5.1 GB
EGAF00002830805 fastq.gz 4.8 GB
EGAF00002830806 fastq.gz 5.6 GB
EGAF00002830807 fastq.gz 4.7 GB
EGAF00002830808 fastq.gz 5.9 GB
EGAF00002830809 fastq.gz 4.0 GB
EGAF00002830810 fastq.gz 5.0 GB
EGAF00002830811 fastq.gz 4.2 GB
EGAF00002830812 fastq.gz 5.1 GB
EGAF00002830813 fastq.gz 5.0 GB
EGAF00002830814 fastq.gz 6.3 GB
EGAF00002830815 fastq.gz 3.8 GB
EGAF00002830816 fastq.gz 4.6 GB
EGAF00002830817 fastq.gz 4.0 GB
EGAF00002830818 fastq.gz 5.0 GB
EGAF00002830819 fastq.gz 3.8 GB
EGAF00002830820 fastq.gz 4.7 GB
EGAF00002830821 fastq.gz 4.1 GB
EGAF00002830822 fastq.gz 5.1 GB
EGAF00002830823 fastq.gz 3.8 GB
EGAF00002830824 fastq.gz 4.7 GB
EGAF00002830825 fastq.gz 5.4 GB
EGAF00002830826 fastq.gz 6.5 GB
EGAF00002830827 fastq.gz 4.6 GB
EGAF00002830828 fastq.gz 5.7 GB
EGAF00002830829 fastq.gz 4.0 GB
EGAF00002830830 fastq.gz 4.9 GB
EGAF00002830831 fastq.gz 4.0 GB
EGAF00002830832 fastq.gz 5.0 GB
EGAF00002830833 fastq.gz 3.8 GB
EGAF00002830834 fastq.gz 4.6 GB
EGAF00002830835 fastq.gz 3.8 GB
EGAF00002830836 fastq.gz 4.6 GB
EGAF00002830837 fastq.gz 4.5 GB
EGAF00002830838 fastq.gz 5.6 GB
EGAF00002830839 fastq.gz 4.8 GB
EGAF00002830840 fastq.gz 6.0 GB
EGAF00002830841 fastq.gz 5.9 GB
EGAF00002830842 fastq.gz 7.2 GB
EGAF00002830843 fastq.gz 4.9 GB
EGAF00002830844 fastq.gz 6.1 GB
EGAF00002830845 fastq.gz 4.8 GB
EGAF00002830846 fastq.gz 5.9 GB
EGAF00002830847 fastq.gz 4.7 GB
EGAF00002830848 fastq.gz 5.9 GB
EGAF00002830849 fastq.gz 3.8 GB
EGAF00002830850 fastq.gz 4.6 GB
EGAF00002830851 fastq.gz 3.9 GB
EGAF00002830852 fastq.gz 4.8 GB
296 Files (1.3 TB)