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Peripheral clonal expansion of T cells (scRNA-seq)

Single-cell RNA-seq of tumor-infiltrating lymphocytes from 14 cancer patients before treatment, taken from tumor, normal adjacent tissue, and peripheral blood. Dataset consists of paired-end FASTQ files, including replicate libraries and runs.

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GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT

GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT WITH COMMERCIAL ORGANIZATIONThis Data Access Agreement (“Agreement”) between Genentech, Inc. (“Genentech”) and User and User Organization (as defined below) governs the terms on which access will be granted to the genotype data obtained from Genentech.In signing this Agreement, User and User Organization agree to be bound by the terms and conditions of access set out in this Agreement.For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User Organization (as defined below). User Organization and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly.Definitions: gRED means Genentech Research and Early Development.Data means all and any human genetic data obtained from Genentech and generated by gRED. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto.User means a researcher whose User Organization has previously completed this Data Access Agreement and has received acknowledgement of its acceptance.Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research.User Organization means the commercial organization at which the User is employed or affiliated.Genentech Data Access Committee means members of the gRED organization that is responsible for making the data access decisions for the genotype data generated by gRED.Terms and Conditions: In signing this Agreement:1.You agree to use the Data only for the advancement of medical research.2.You agree to preserve, at all times, the confidentiality of Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy.3.You agree not to attempt to link the Data provided under this Agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees.4.You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should You wish to share the Data with a collaborator outside the same Organization, the third party must make a separate application for access to the Data.5.You agree to use the Data for the approved purpose and project described in your application; use of the Data for a new purpose or project will require a new application and approval.6.You shall be free to publish the results of the research using the Data for the approved purpose. You agree to acknowledge in any such publication that the research makes use of Data generated by Genentech/gRED.7.You accept that Genentech:a.bears no legal responsibility for the accuracy or comprehensiveness of the Data; and b.accepts no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason.8.You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted.9.You recognize that nothing in this Agreement shall operate to transfer to the User Organization any intellectual property rights relating to the Data. The User Organization has the right to develop intellectual property based on the comparisons with their own data. Any invention or discovery made by User and/or User Organization arising out of the use of the Data (each a “Data Invention”) shall be promptly disclosed to Genentech in writing. User Organization hereby grants to Genentech a royalty-free, fully-paid, non-exclusive license (i) to make, use and import such Data Invention for internal research purposes; and (ii) to make, use, offer to sell, sell and import such Data Invention to the extent necessary to commercialize Genentech product(s), which license shall be sublicensable to Genentech’s affiliates and development and commercialization collaborators on such product(s). 10.You agree that you will submit a report to the Genentech Data Access Committee, if requested, on completion of the agreed purpose. The Genentech Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Organization.11.(a) You agree to use the Data in accordance with all applicable laws, including but not limited to applicable data privacy laws.(b) The Genentech Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 12.This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 13 below.13.You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. Either Party may terminate this Agreement upon thirty (30) days written notice for any reason. The following Sections of this Agreement shall survive its expiration or termination: Sections 1 – 10, 11(a), and 13. For and on behalf of User/Applicant:___________________________Signature of User/Applicant___________________________Print Name of User/Applicant___________________________Title___________________________DateFor and on behalf of User Organization:___________________________Signature of Organizational or Administrative Authority___________________________Print Name___________________________Title___________________________Name of User Organization___________________________DateFor Genentech, Inc.:___________________________Signature___________________________Print Name___________________________Title___________________________Date

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003993 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002839234 fastq.gz 6.9 GB
EGAF00002839235 fastq.gz 21.8 GB
EGAF00002839236 fastq.gz 6.4 GB
EGAF00002839237 fastq.gz 20.5 GB
EGAF00002839238 fastq.gz 6.7 GB
EGAF00002839239 fastq.gz 21.3 GB
EGAF00002839240 fastq.gz 7.4 GB
EGAF00002839241 fastq.gz 22.8 GB
EGAF00002839242 fastq.gz 7.3 GB
EGAF00002839243 fastq.gz 22.9 GB
EGAF00002839244 fastq.gz 7.3 GB
EGAF00002839245 fastq.gz 23.4 GB
EGAF00002839246 fastq.gz 7.3 GB
EGAF00002839247 fastq.gz 23.2 GB
EGAF00002839248 fastq.gz 7.1 GB
EGAF00002839249 fastq.gz 21.7 GB
EGAF00002839250 fastq.gz 6.8 GB
EGAF00002839251 fastq.gz 21.3 GB
EGAF00002839252 fastq.gz 7.3 GB
EGAF00002839253 fastq.gz 22.1 GB
EGAF00002839254 fastq.gz 7.2 GB
EGAF00002839255 fastq.gz 22.0 GB
EGAF00002839256 fastq.gz 7.3 GB
EGAF00002839257 fastq.gz 22.7 GB
EGAF00002839258 fastq.gz 7.2 GB
EGAF00002839259 fastq.gz 22.0 GB
EGAF00002839260 fastq.gz 6.7 GB
EGAF00002839261 fastq.gz 21.0 GB
EGAF00002839262 fastq.gz 6.8 GB
EGAF00002839263 fastq.gz 21.2 GB
EGAF00002839264 fastq.gz 6.9 GB
EGAF00002839265 fastq.gz 21.8 GB
EGAF00002839266 fastq.gz 7.3 GB
EGAF00002839267 fastq.gz 19.8 GB
EGAF00002839268 fastq.gz 7.7 GB
EGAF00002839269 fastq.gz 22.5 GB
EGAF00002839270 fastq.gz 7.7 GB
EGAF00002839271 fastq.gz 22.8 GB
EGAF00002839272 fastq.gz 7.5 GB
EGAF00002839273 fastq.gz 23.4 GB
EGAF00002839274 fastq.gz 7.2 GB
EGAF00002839275 fastq.gz 22.4 GB
EGAF00002839276 fastq.gz 7.3 GB
EGAF00002839277 fastq.gz 23.1 GB
EGAF00002839278 fastq.gz 6.6 GB
EGAF00002839279 fastq.gz 20.4 GB
EGAF00002839280 fastq.gz 6.9 GB
EGAF00002839281 fastq.gz 21.1 GB
EGAF00002839282 fastq.gz 6.8 GB
EGAF00002839283 fastq.gz 20.9 GB
EGAF00002839284 fastq.gz 6.7 GB
EGAF00002839285 fastq.gz 20.3 GB
EGAF00002839286 fastq.gz 7.1 GB
EGAF00002839287 fastq.gz 22.7 GB
EGAF00002839288 fastq.gz 6.6 GB
EGAF00002839289 fastq.gz 20.8 GB
EGAF00002839290 fastq.gz 6.1 GB
EGAF00002839291 fastq.gz 20.9 GB
EGAF00002839292 fastq.gz 6.3 GB
EGAF00002839293 fastq.gz 20.9 GB
EGAF00002839294 fastq.gz 5.9 GB
EGAF00002839295 fastq.gz 19.3 GB
EGAF00002839296 fastq.gz 5.9 GB
EGAF00002839297 fastq.gz 17.3 GB
EGAF00002839298 fastq.gz 6.4 GB
EGAF00002839299 fastq.gz 19.4 GB
EGAF00002839300 fastq.gz 6.6 GB
EGAF00002839301 fastq.gz 19.5 GB
EGAF00002839302 fastq.gz 6.9 GB
EGAF00002839303 fastq.gz 21.3 GB
EGAF00002839304 fastq.gz 6.9 GB
EGAF00002839305 fastq.gz 20.4 GB
EGAF00002839306 fastq.gz 7.2 GB
EGAF00002839307 fastq.gz 22.1 GB
EGAF00002839308 fastq.gz 6.8 GB
EGAF00002839309 fastq.gz 20.7 GB
EGAF00002839310 fastq.gz 7.0 GB
EGAF00002839311 fastq.gz 22.6 GB
EGAF00002839312 fastq.gz 6.4 GB
EGAF00002839313 fastq.gz 19.4 GB
EGAF00002839314 fastq.gz 6.8 GB
EGAF00002839315 fastq.gz 18.1 GB
EGAF00002839316 fastq.gz 6.7 GB
EGAF00002839317 fastq.gz 20.7 GB
EGAF00002839318 fastq.gz 6.6 GB
EGAF00002839319 fastq.gz 22.4 GB
EGAF00002839320 fastq.gz 7.5 GB
EGAF00002839321 fastq.gz 23.6 GB
EGAF00002839322 fastq.gz 7.5 GB
EGAF00002839323 fastq.gz 23.1 GB
90 Files (1.3 TB)