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SNV and indel calls from 8921 individuals in the British Autozygosity Populations BioResource dataset

This includes variant calls (single nucleotide variants and small insertions/deletions) from 8086 (mostly British Pakistani/British Bangladeshi) individuals from the following studies: 1. 5236 British Pakistani/British Bangladeshi adults from East London Genes and Health (ELGH) 2. 2624 British South Asian mothers from Born in Bradford (mostly Pakistani) (BiB) 3. 1061 British South Asian adults from Birmingham (mostly Pakistani) (Birm) All of the Birmingham and most of the Born in Bradford samples were previously sequenced as part of PMID: 26940866. In the sample list file, the columns of interest to most people will be: - sample ID from the vcf cohort - which cohort they're in sex.assigned - sex inferred from coverage on the X and Y chromosomes. Individuals for whom this did not match their reported sex have been discarded total, chrX and chrY - coverage within bait regions across all chromosomes, chrX and chrY respectively Mapping was done with bwa-mem and variant calling was carried out with GATK HaplotypeCaller. We removed variant sites for which the following was true: SNPs: "QD < 2.0 || FS > 30 || MQ < 40.0 || MQRankSum < -12.5 || ReadPosRankSum < -8.0" Indels: "QD < 2.0 || FS > 30 || ReadPosRankSum < -20.0"

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001001565 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002838984 vcf.gz 506.7 MB
EGAF00002838985 vcf.gz 3.8 GB
EGAF00002838986 vcf.gz 691.4 MB
EGAF00002838987 vcf.gz 5.7 GB
EGAF00002838988 vcf.gz 739.2 MB
EGAF00002838989 vcf.gz 5.0 GB
EGAF00002838990 vcf.gz 245.7 MB
EGAF00002838991 vcf.gz 1.6 GB
EGAF00002838992 vcf.gz 429.8 MB
EGAF00002838993 vcf.gz 3.1 GB
EGAF00002838994 vcf.gz 424.5 MB
EGAF00002838995 vcf.gz 9.0 GB
EGAF00002838996 vcf.gz 313.1 MB
EGAF00002838997 vcf.gz 2.5 GB
EGAF00002838998 vcf.gz 160.0 MB
EGAF00002838999 vcf.gz 1.1 GB
EGAF00002839000 vcf.gz 264.3 MB
EGAF00002839001 vcf.gz 2.4 GB
EGAF00002839002 vcf.gz 931.8 MB
EGAF00002839003 vcf.gz 6.7 GB
EGAF00002839004 vcf.gz 715.0 MB
EGAF00002839005 vcf.gz 5.2 GB
EGAF00002839006 vcf.gz 543.0 MB
EGAF00002839007 vcf.gz 3.5 GB
EGAF00002839008 vcf.gz 573.8 MB
EGAF00002839009 vcf.gz 4.0 GB
EGAF00002839010 vcf.gz 670.2 MB
EGAF00002839011 vcf.gz 4.6 GB
EGAF00002839012 vcf.gz 647.7 MB
EGAF00002839013 vcf.gz 4.7 GB
EGAF00002839014 vcf.gz 459.9 MB
EGAF00002839015 vcf.gz 3.4 GB
EGAF00002839016 vcf.gz 492.8 MB
EGAF00002839017 vcf.gz 4.0 GB
EGAF00002839018 vcf.gz 3.2 GB
EGAF00002839019 vcf.gz 522.9 MB
EGAF00002839020 vcf.gz 4.7 GB
EGAF00002839021 vcf.gz 698.3 MB
EGAF00002839022 vcf.gz 5.5 GB
EGAF00002839023 vcf.gz 203.2 MB
EGAF00002839024 vcf.gz 1.4 GB
EGAF00002839025 vcf.gz 771.9 MB
EGAF00002839026 vcf.gz 6.6 GB
EGAF00002839027 vcf.gz 1.2 GB
EGAF00002839324 txt.gz 191.0 kB
45 Files (104.0 GB)