Browse files

Dataset

Targeted and exome sequencing data from 24 prostate cancer patients with somatic hypermutation

Dataset ID Technology Samples
EGAD00001005474 Illumina HiSeq 2500,Illumina MiSeq 154

Dataset Description

This dataset contains all available targeted and exome sequencing paired fastq files from our study, "Identification of hypermutation and defective mismatch repair in ctDNA from metastatic prostate cancer". Patient identifiers are denoted by the first three characters of the sample aliases (e.g. "P01"), and additional information is appended to reflect the panel used (targeted 73 gene panel: "PC", or whole-exome panel: "WXS"), and whether the sample represents cell-free DNA ("cfdna") or paired white-blood cell control ("wbc"). Several patients have multiple serial collections available, and these are denoted by the characters "C1, C2, C3," etc. All samples were sequenced using Illumina technology.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

Hypermutation / MMRd Data Access Committee
Contact person: Alexander Wyatt
Email: awyatt [at] prostatecentre [dot] com
More details: EGAC00001001373

Downloads

You don't have access to the download section.