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DESIGN-VUMC low coverage WGS

Low-coverage whole genome sequencing data of 37 HPV-negative HNSCC specimens from patients treated at the VU Medical Centre, Amsterdam. HNSCC biopsy samples obtained prior to treatment (chemo-radiotherapy) were used for WGS to a depth of approx. 0.5X.

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DESIGN-VUMC Policy

To request access to this dataset, please contact the Data Access Committee HNSCC_DAC_DESIGN. Data Access Requests for this dataset should include the following information: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and EGA Dataset Accession Number(s) - Study objective and brief abstract of the project in which the data will be used (500 words) - List of individuals who will be allowed access to the requested datasets by the Recipient and/or Recipient Institution - Policy name (DESIGN-VUMC) assigned to this dataset Data Access Request for this dataset will be reviewed by the Data Access Committee HNSCC_DAC_DESIGN. After receipt and review by the Data Access Committee, a Data Transfer Agreement will have to be completed, signed and returned to the HNSCC_DAC_DESIGN Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the HNSCC_DAC_DESIGN Data Access Committee reserves the right to withhold granting access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004091 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00003029945 bam 1.1 GB Report
EGAF00003029946 bam 1.2 GB Report
EGAF00003029947 bam 1.2 GB Report
EGAF00003029948 bam 1.2 GB Report
EGAF00003029949 bam 1.2 GB Report
EGAF00003029950 bam 1.1 GB Report
EGAF00003029951 bam 1.3 GB Report
EGAF00003029952 bam 1.3 GB Report
EGAF00003029953 bam 1.3 GB Report
EGAF00003029954 bam 1.4 GB Report
EGAF00003029956 bam 1.2 GB Report
EGAF00003029957 bam 1.3 GB Report
EGAF00003029958 bam 1.4 GB Report
EGAF00003029959 bam 1.3 GB Report
EGAF00003029960 bam 1.2 GB Report
EGAF00003029961 bam 1.1 GB Report
EGAF00003029962 bam 1.4 GB Report
EGAF00003029997 bam 1.3 GB Report
EGAF00003029998 bam 1.3 GB Report
EGAF00003029999 bam 1.0 GB Report
EGAF00003030000 bam 1.2 GB Report
EGAF00003030001 bam 1.2 GB Report
EGAF00003030002 bam 985.7 MB Report
EGAF00003030003 bam 1.1 GB Report
EGAF00003030004 bam 753.1 MB Report
EGAF00003030005 bam 1.2 GB Report
EGAF00003030006 bam 1.4 GB Report
EGAF00003030008 bam 1.1 GB Report
EGAF00003030009 bam 1.6 GB Report
EGAF00003030010 bam 1.2 GB Report
EGAF00003030011 bam 1.3 GB Report
EGAF00003030012 bam 1.1 GB Report
EGAF00003030013 bam 1.2 GB Report
EGAF00003030014 bam 1.1 GB Report
EGAF00003030015 bam 1.1 GB Report
EGAF00003030016 bam 1.1 GB Report
EGAF00003030017 bam 1.0 GB Report
37 Files (44.3 GB)