Tumor and normal exomes for 95 PMBCL cases
Whole-exome sequencing for 95 PMBCL cases (including 21 with matching normal DNA) was performed using a targeted capture approach with the SureSelect Human All Exon V6+UTR bait (Agilent Technologies) followed by massively parallel sequencing of enriched fragments on the HiSeq2500 platform (Illumina). Five libraries were pooled per lane and a 125bp paired-end mode was used. Tumor and normal DNA samples were sequenced to an average of 115X (SD 24X). All reads were aligned to the human reference genome (hg19) using bwa-mem version 0.7.5a29 with optical and PCR duplicates removed using the Picard tool.
- 11/01/2020
- 116 samples
- DAC: EGAC00000000011
DUO:0000007 version: 2019-01-07
disease specific research
This data use permission indicates that use is allowed provided it is related to the specified disease.
ModifiersMONDO:0005157
DUO:0000012 version: 2021-02-23
research specific restrictions
This data use modifier indicates that use is limited to studies of a certain research type.
DUO:0000021 version: 2019-01-07
ethics approval required
This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
DUO:0000025 version: 2021-02-23
time limit on use
This data use modifier indicates that use is approved for a specific number of months.
DUO:0000026 version: 2019-01-07
user specific restriction
This data use modifier indicates that use is limited to use by approved users.
BC Cancer, part of the Provincial Health Services Authority - Data Access Policy
Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001003746 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
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|---|---|---|---|---|
| EGAF00003248167 | bam | 8.3 GB | Report |
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| EGAF00003248168 | bam | 7.3 GB | Report |
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| EGAF00003248169 | bam | 7.1 GB | Report |
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| EGAF00003248170 | bam | 7.8 GB | Report |
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| EGAF00003248171 | bam | 5.2 GB | Report |
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| EGAF00003248172 | bam | 6.8 GB | Report |
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| EGAF00003248173 | bam | 6.8 GB | Report |
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| EGAF00003248174 | bam | 7.8 GB | Report |
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| EGAF00003248175 | bam | 6.3 GB | Report |
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| EGAF00003248176 | bam | 6.6 GB | Report |
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| EGAF00003248177 | bam | 8.1 GB | Report |
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| EGAF00003248178 | bam | 5.9 GB | Report |
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| EGAF00003248179 | bam | 4.5 GB | Report |
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| EGAF00003248180 | bam | 6.5 GB | Report |
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| EGAF00003248181 | bam | 7.8 GB | Report |
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| EGAF00003248182 | bam | 7.6 GB | Report |
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| EGAF00003248183 | bam | 7.5 GB | Report |
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| EGAF00003248184 | bam | 7.8 GB | Report |
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| EGAF00003248185 | bam | 8.5 GB | Report |
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| EGAF00003248186 | bam | 7.4 GB | Report |
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| EGAF00003248187 | bam | 4.9 GB | Report |
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| EGAF00003248188 | bam | 7.6 GB | Report |
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| EGAF00003248189 | bam | 7.5 GB | Report |
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| EGAF00003248190 | bam | 5.3 GB | Report |
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| EGAF00003248191 | bam | 6.7 GB | Report |
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| EGAF00003248192 | bam | 5.5 GB | Report |
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| EGAF00003248193 | bam | 6.5 GB | Report |
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| EGAF00003248194 | bam | 6.3 GB | Report |
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| EGAF00003248195 | bam | 6.8 GB | Report |
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| EGAF00003248196 | bam | 7.2 GB | Report |
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| EGAF00003248197 | bam | 6.8 GB | Report |
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| EGAF00003248198 | bam | 7.3 GB | Report |
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| EGAF00003248199 | bam | 7.8 GB | Report |
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| EGAF00003248200 | bam | 6.4 GB | Report |
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| EGAF00003248201 | bam | 7.1 GB | Report |
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| EGAF00003248202 | bam | 8.3 GB | Report |
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| EGAF00003248203 | bam | 5.7 GB | Report |
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| EGAF00003248204 | bam | 7.6 GB | Report |
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| EGAF00003248205 | bam | 3.3 GB | Report |
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| EGAF00003248206 | bam | 5.4 GB | Report |
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| EGAF00003248207 | bam | 6.7 GB | Report |
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| EGAF00003248208 | bam | 7.9 GB | Report |
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| EGAF00003248209 | bam | 7.8 GB | Report |
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| EGAF00003248210 | bam | 7.9 GB | Report |
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| EGAF00003248211 | bam | 6.1 GB | Report |
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| EGAF00003248212 | bam | 8.1 GB | Report |
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| EGAF00003248213 | bam | 7.1 GB | Report |
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| EGAF00003248214 | bam | 7.6 GB | Report |
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| EGAF00003248215 | bam | 6.3 GB | Report |
|
| EGAF00003248216 | bam | 8.8 GB | Report |
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| EGAF00003248217 | bam | 8.7 GB | Report |
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| EGAF00003248218 | bam | 8.7 GB | Report |
|
| EGAF00003248219 | bam | 7.3 GB | Report |
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| EGAF00003248220 | bam | 7.7 GB | Report |
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| EGAF00003248221 | bam | 7.5 GB | Report |
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| EGAF00003248222 | bam | 6.9 GB | Report |
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| EGAF00003248223 | bam | 4.6 GB | Report |
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| EGAF00003248224 | bam | 5.2 GB | Report |
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| EGAF00003248225 | bam | 6.4 GB | Report |
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| EGAF00003248226 | bam | 7.2 GB | Report |
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| EGAF00003248227 | bam | 9.8 GB | Report |
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| EGAF00003248228 | bam | 8.3 GB | Report |
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| EGAF00003248229 | bam | 8.6 GB | Report |
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| EGAF00003248230 | bam | 8.4 GB | Report |
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| EGAF00003248231 | bam | 9.0 GB | Report |
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| EGAF00003248232 | bam | 8.0 GB | Report |
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| EGAF00003248233 | bam | 7.3 GB | Report |
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| EGAF00003248234 | bam | 8.3 GB | Report |
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| EGAF00003248235 | bam | 6.0 GB | Report |
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| EGAF00003248236 | bam | 9.4 GB | Report |
|
| EGAF00003248237 | bam | 11.1 GB | Report |
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| EGAF00003248238 | bam | 7.1 GB | Report |
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| EGAF00003248239 | bam | 8.3 GB | Report |
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| EGAF00003248240 | bam | 7.1 GB | Report |
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| EGAF00003248241 | bam | 4.4 GB | Report |
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| EGAF00003248242 | bam | 5.5 GB | Report |
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| EGAF00003248243 | bam | 7.0 GB | Report |
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| EGAF00003248244 | bam | 5.4 GB | Report |
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| EGAF00003248245 | bam | 5.6 GB | Report |
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| EGAF00003248246 | bam | 7.2 GB | Report |
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| EGAF00003248247 | bam | 6.8 GB | Report |
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| EGAF00003248248 | bam | 6.4 GB | Report |
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| EGAF00003248249 | bam | 6.5 GB | Report |
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| EGAF00003248250 | bam | 6.3 GB | Report |
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| EGAF00003248251 | bam | 6.0 GB | Report |
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| EGAF00003248252 | bam | 5.6 GB | Report |
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| EGAF00003248253 | bam | 7.5 GB | Report |
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| EGAF00003248254 | bam | 6.4 GB | Report |
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| EGAF00003248255 | bam | 7.8 GB | Report |
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| EGAF00003248256 | bam | 7.8 GB | Report |
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| EGAF00003248257 | bam | 8.6 GB | Report |
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| EGAF00003248258 | bam | 6.8 GB | Report |
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| EGAF00003248259 | bam | 10.5 GB | Report |
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| EGAF00003248260 | bam | 8.0 GB | Report |
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| EGAF00003248261 | bam | 6.4 GB | Report |
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| EGAF00003248262 | bam | 5.1 GB | Report |
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| EGAF00003248263 | bam | 8.7 GB | Report |
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| EGAF00003248264 | bam | 13.8 GB | Report |
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| EGAF00003248265 | bam | 5.3 GB | Report |
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| EGAF00003248266 | bam | 4.2 GB | Report |
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| EGAF00003248267 | bam | 7.9 GB | Report |
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| EGAF00003248268 | bam | 4.2 GB | Report |
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| EGAF00003248269 | bam | 5.0 GB | Report |
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| EGAF00003248270 | bam | 9.1 GB | Report |
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| EGAF00003248271 | bam | 7.1 GB | Report |
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| EGAF00003248272 | bam | 7.0 GB | Report |
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| EGAF00003248273 | bam | 8.5 GB | Report |
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| EGAF00003248274 | bam | 7.1 GB | Report |
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| EGAF00003248275 | bam | 5.7 GB | Report |
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| EGAF00003248276 | bam | 7.7 GB | Report |
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| EGAF00003248277 | bam | 9.6 GB | Report |
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| EGAF00003248278 | bam | 7.7 GB | Report |
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| EGAF00003248279 | bam | 7.5 GB | Report |
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| EGAF00003248280 | bam | 7.9 GB | Report |
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| EGAF00003248281 | bam | 7.8 GB | Report |
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| EGAF00003248282 | bam | 6.9 GB | Report |
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| 116 Files (829.2 GB) | ||||