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Tumor and normal exomes for 95 PMBCL cases

Whole-exome sequencing for 95 PMBCL cases (including 21 with matching normal DNA) was performed using a targeted capture approach with the SureSelect Human All Exon V6+UTR bait (Agilent Technologies) followed by massively parallel sequencing of enriched fragments on the HiSeq2500 platform (Illumina). Five libraries were pooled per lane and a 125bp paired-end mode was used. Tumor and normal DNA samples were sequenced to an average of 115X (SD 24X). All reads were aligned to the human reference genome (hg19) using bwa-mem version 0.7.5a29 with optical and PCR duplicates removed using the Picard tool.

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BC Cancer, part of the Provincial Health Services Authority - Data Access Policy

Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003746 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003248167 bam 8.3 GB
EGAF00003248168 bam 7.3 GB
EGAF00003248169 bam 7.1 GB
EGAF00003248170 bam 7.8 GB
EGAF00003248171 bam 5.2 GB
EGAF00003248172 bam 6.8 GB
EGAF00003248173 bam 6.8 GB
EGAF00003248174 bam 7.8 GB
EGAF00003248175 bam 6.3 GB
EGAF00003248176 bam 6.6 GB
EGAF00003248177 bam 8.1 GB
EGAF00003248178 bam 5.9 GB
EGAF00003248179 bam 4.5 GB
EGAF00003248180 bam 6.5 GB
EGAF00003248181 bam 7.8 GB
EGAF00003248182 bam 7.6 GB
EGAF00003248183 bam 7.5 GB
EGAF00003248184 bam 7.8 GB
EGAF00003248185 bam 8.5 GB
EGAF00003248186 bam 7.4 GB
EGAF00003248187 bam 4.9 GB
EGAF00003248188 bam 7.6 GB
EGAF00003248189 bam 7.5 GB
EGAF00003248190 bam 5.3 GB
EGAF00003248191 bam 6.7 GB
EGAF00003248192 bam 5.5 GB
EGAF00003248193 bam 6.5 GB
EGAF00003248194 bam 6.3 GB
EGAF00003248195 bam 6.8 GB
EGAF00003248196 bam 7.2 GB
EGAF00003248197 bam 6.8 GB
EGAF00003248198 bam 7.3 GB
EGAF00003248199 bam 7.8 GB
EGAF00003248200 bam 6.4 GB
EGAF00003248201 bam 7.1 GB
EGAF00003248202 bam 8.3 GB
EGAF00003248203 bam 5.7 GB
EGAF00003248204 bam 7.6 GB
EGAF00003248205 bam 3.3 GB
EGAF00003248206 bam 5.4 GB
EGAF00003248207 bam 6.7 GB
EGAF00003248208 bam 7.9 GB
EGAF00003248209 bam 7.8 GB
EGAF00003248210 bam 7.9 GB
EGAF00003248211 bam 6.1 GB
EGAF00003248212 bam 8.1 GB
EGAF00003248213 bam 7.1 GB
EGAF00003248214 bam 7.6 GB
EGAF00003248215 bam 6.3 GB
EGAF00003248216 bam 8.8 GB
EGAF00003248217 bam 8.7 GB
EGAF00003248218 bam 8.7 GB
EGAF00003248219 bam 7.3 GB
EGAF00003248220 bam 7.7 GB
EGAF00003248221 bam 7.5 GB
EGAF00003248222 bam 6.9 GB
EGAF00003248223 bam 4.6 GB
EGAF00003248224 bam 5.2 GB
EGAF00003248225 bam 6.4 GB
EGAF00003248226 bam 7.2 GB
EGAF00003248227 bam 9.8 GB
EGAF00003248228 bam 8.3 GB
EGAF00003248229 bam 8.6 GB
EGAF00003248230 bam 8.4 GB
EGAF00003248231 bam 9.0 GB
EGAF00003248232 bam 8.0 GB
EGAF00003248233 bam 7.3 GB
EGAF00003248234 bam 8.3 GB
EGAF00003248235 bam 6.0 GB
EGAF00003248236 bam 9.4 GB
EGAF00003248237 bam 11.1 GB
EGAF00003248238 bam 7.1 GB
EGAF00003248239 bam 8.3 GB
EGAF00003248240 bam 7.1 GB
EGAF00003248241 bam 4.4 GB
EGAF00003248242 bam 5.5 GB
EGAF00003248243 bam 7.0 GB
EGAF00003248244 bam 5.4 GB
EGAF00003248245 bam 5.6 GB
EGAF00003248246 bam 7.2 GB
EGAF00003248247 bam 6.8 GB
EGAF00003248248 bam 6.4 GB
EGAF00003248249 bam 6.5 GB
EGAF00003248250 bam 6.3 GB
EGAF00003248251 bam 6.0 GB
EGAF00003248252 bam 5.6 GB
EGAF00003248253 bam 7.5 GB
EGAF00003248254 bam 6.4 GB
EGAF00003248255 bam 7.8 GB
EGAF00003248256 bam 7.8 GB
EGAF00003248257 bam 8.6 GB
EGAF00003248258 bam 6.8 GB
EGAF00003248259 bam 10.5 GB
EGAF00003248260 bam 8.0 GB
EGAF00003248261 bam 6.4 GB
EGAF00003248262 bam 5.1 GB
EGAF00003248263 bam 8.7 GB
EGAF00003248264 bam 13.8 GB
EGAF00003248265 bam 5.3 GB
EGAF00003248266 bam 4.2 GB
EGAF00003248267 bam 7.9 GB
EGAF00003248268 bam 4.2 GB
EGAF00003248269 bam 5.0 GB
EGAF00003248270 bam 9.1 GB
EGAF00003248271 bam 7.1 GB
EGAF00003248272 bam 7.0 GB
EGAF00003248273 bam 8.5 GB
EGAF00003248274 bam 7.1 GB
EGAF00003248275 bam 5.7 GB
EGAF00003248276 bam 7.7 GB
EGAF00003248277 bam 9.6 GB
EGAF00003248278 bam 7.7 GB
EGAF00003248279 bam 7.5 GB
EGAF00003248280 bam 7.9 GB
EGAF00003248281 bam 7.8 GB
EGAF00003248282 bam 6.9 GB
116 Files (829.2 GB)