Need Help?

GATCI whole genome sequence data

Sequence data in fastq format was aligned to the GRCh38 reference genome with BWA-MEM. Aligned sequence was preprocessed with GATK for Indel Realignment and Base Quality Score Recalibration. Duplicates were marked with Picard Mark Duplicates. Aligned sequence is in bam format. Details of the alignment can be found in the bam header

Request Access

Data Access Agreement for the Nichols Group

Data will be available to qualified investigators upon request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002234 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003091498 bam 174.9 GB
EGAF00003091499 bam 322.7 GB
EGAF00003091500 bam 163.8 GB
EGAF00003091501 bam 270.9 GB
EGAF00003091502 bam 186.9 GB
EGAF00003091505 bam 320.3 GB
EGAF00003091506 bam 176.9 GB
EGAF00003091533 bam 188.9 GB
EGAF00003091568 bam 350.8 GB
EGAF00003091569 bam 182.0 GB
EGAF00003091570 bam 282.2 GB
EGAF00003091574 bam 346.9 GB
EGAF00003091577 bam 289.4 GB
EGAF00003091578 bam 170.1 GB
EGAF00003091579 bam 299.9 GB
EGAF00003091580 bam 164.3 GB
EGAF00003091581 bam 289.5 GB
EGAF00003091582 bam 150.7 GB
EGAF00003091583 bam 322.5 GB
EGAF00003091584 bam 211.1 GB
EGAF00003127473 bam 177.9 GB
EGAF00003127474 bam 214.1 GB
EGAF00003127475 bam 181.1 GB
EGAF00003127476 bam 171.2 GB
EGAF00003127477 bam 195.2 GB
EGAF00003127478 bam 182.3 GB
EGAF00003127479 bam 161.8 GB
EGAF00003127480 bam 159.9 GB
EGAF00003127481 bam 314.3 GB
EGAF00003127482 bam 162.5 GB
EGAF00003127483 bam 308.6 GB
EGAF00003127484 bam 170.7 GB
EGAF00003127486 bam 300.5 GB
EGAF00003127487 bam 188.6 GB
EGAF00003127488 bam 162.2 GB
EGAF00003127489 bam 211.2 GB
EGAF00003127490 bam 216.4 GB
EGAF00003127491 bam 318.1 GB
EGAF00003127492 bam 160.2 GB
EGAF00003127493 bam 183.8 GB
EGAF00003127494 bam 176.1 GB
EGAF00003127495 bam 192.4 GB
EGAF00003127496 bam 206.8 GB
EGAF00003127497 bam 191.4 GB
EGAF00003127498 bam 184.7 GB
EGAF00003127499 bam 182.6 GB
EGAF00003127500 bam 184.9 GB
EGAF00003127501 bam 171.3 GB
EGAF00003127502 bam 158.7 GB
EGAF00003127503 bam 180.1 GB
EGAF00003127504 bam 142.8 GB
EGAF00003127505 bam 181.6 GB
EGAF00003127506 bam 307.9 GB
EGAF00003127507 bam 325.0 GB
EGAF00003127508 bam 158.2 GB
EGAF00003127509 bam 293.4 GB
EGAF00003127510 bam 175.9 GB
EGAF00003127511 bam 198.7 GB
EGAF00003127512 bam 211.1 GB
EGAF00003127514 bam 162.9 GB
EGAF00003127515 bam 310.3 GB
EGAF00003133509 bam 186.0 GB
EGAF00003133510 bam 168.2 GB
EGAF00003133511 bam 186.8 GB
EGAF00003133512 bam 162.7 GB
EGAF00003133513 bam 321.2 GB
EGAF00003133514 bam 174.9 GB
EGAF00003133515 bam 185.1 GB
EGAF00003133516 bam 324.0 GB
EGAF00003151250 bam 184.7 GB
EGAF00003151251 bam 188.6 GB
EGAF00003212017 bam 162.3 GB
EGAF00003250178 bam 297.0 GB
EGAF00003250179 bam 160.3 GB
EGAF00003253940 bam 418.3 GB
EGAF00003253941 bam 411.5 GB
EGAF00003258915 bam 433.9 GB
EGAF00003258916 bam 295.5 GB
EGAF00003263592 bam 419.4 GB
EGAF00003263593 bam 261.8 GB
EGAF00003263594 bam 171.5 GB
EGAF00003263595 bam 163.4 GB
EGAF00003287861 bam 152.7 GB
EGAF00003287862 bam 156.7 GB
EGAF00003287867 bam 172.3 GB
EGAF00003287868 bam 179.1 GB
EGAF00003287869 bam 280.1 GB
EGAF00003287870 bam 403.6 GB
EGAF00003287873 bam 175.5 GB
EGAF00003287874 bam 194.4 GB
EGAF00003287875 bam 438.3 GB
EGAF00003287876 bam 287.4 GB
EGAF00003287877 bam 410.4 GB
EGAF00003287878 bam 395.7 GB
EGAF00003287879 bam 306.3 GB
EGAF00003287880 bam 435.4 GB
EGAF00003287881 bam 419.9 GB
EGAF00003287882 bam 438.8 GB
98 Files (23.4 TB)